11LP | pdb_000011lp

Mouse monoclonal antibody A11 in complex with rabies virus glycoprotein

PDB DOI: https://doi.org/10.2210/pdb11LP/pdb
EM Map EMD-75811: EMDB EMDataResource

Classification: VIRAL PROTEIN
Organism(s): Homo sapiens, Mus musculus, Lyssavirus rabies
Expression System: Drosophila melanogaster, Homo sapiens
Mutation(s): No

Deposited: 2026-03-03 Released: 2026-08-19
Deposition Author(s): Callaway, H.M., Zyla, D., Hastie, K., Harkins, S., Kothalawalage, S., Samarasinghe, S., Flynn, A., Hariharan, C., Yin, J., Corti, D., Bouhry, H., Dessain, S., Saphire, E.O.
Funding Organization(s): Other private

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.92 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Antigenic landscape of rabies and related lyssaviruses revealed by cryo-EM

Callaway, H.M., Zyla, D., Hastie, K., Harkins, S., Kothalawalage, S., Samarasinghe, S., Flynn, A., Hariharan, C., Yin, J., Corti, D., Bouhry, H., Dessain, S., Saphire, E.O.

To be published.

Macromolecule Content

Total Structure Weight: 468.39 kDa
Atom Count: 19,176
Modeled Residue Count: 2,451
Deposited Residue Count: 4,278
Unique protein chains: 5

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Monoclonal Antibody RVA122 Light Chain	A [auth F], E [auth D], F [auth H]	217	Homo sapiens	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
Sequence Annotations Expand
Reference Sequence

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| 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Monoclonal Antibody A11 Heavy Chain	B [auth M], K, L [auth O]	262	Mus musculus	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
Sequence Annotations Expand
Reference Sequence

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| 3D Structure

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Monoclonal Antibody RVA122 Heavy Chain	C [auth G], I, J [auth E]	265	Homo sapiens	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
Sequence Annotations Expand
Reference Sequence

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| 3D Structure

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
Glycoprotein	D [auth B], G [auth C], H [auth A]	468	Lyssavirus rabies	Mutation(s): 0
UniProt
Find proteins for P08667 (Rabies virus (strain Pasteur vaccins / PV)) Explore P08667 Go to UniProtKB: P08667
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P08667
Glycosylation
Glycosylation Sites: 3	Glycosylation Focus chain D [auth B] Focus chain G [auth C] Focus chain H [auth A]
Sequence Annotations Expand
Reference Sequence

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| 3D Structure

Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
Monoclonal Antibody A11 Light Chain	M [auth L], N [auth J], O [auth N]	214	Mus musculus	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NAG Query on NAG Download:Ideal Coordinates CCD File SDF format, chain P [auth B] SDF format, chain Q [auth B] SDF format, chain S [auth C] SDF format, chain T [auth C] SDF format, chain U [auth C] SDF format, chain V [auth A] SDF format, chain W [auth A] SDF format, chain X [auth A] SDF format, chain R [auth B] MOL2 format, chain P [auth B] MOL2 format, chain Q [auth B] MOL2 format, chain S [auth C] MOL2 format, chain T [auth C] MOL2 format, chain U [auth C] MOL2 format, chain V [auth A] MOL2 format, chain W [auth A] MOL2 format, chain X [auth A] MOL2 format, chain R [auth B] mmCIF format, chain P [auth B] mmCIF format, chain Q [auth B] mmCIF format, chain S [auth C] mmCIF format, chain T [auth C] mmCIF format, chain U [auth C] mmCIF format, chain V [auth A] mmCIF format, chain W [auth A] mmCIF format, chain X [auth A] mmCIF format, chain R [auth B]	P [auth B] Q [auth B] R [auth B] S [auth C] T [auth C] P [auth B], Q [auth B], R [auth B], S [auth C], T [auth C], U [auth C], V [auth A], W [auth A], X [auth A]	2-acetamido-2-deoxy-beta-D-glucopyranose C₈ H₁₅ N O₆ OVRNDRQMDRJTHS-FMDGEEDCSA-N		Interactions Focus chain P [auth B] Focus chain Q [auth B] Focus chain R [auth B] Focus chain S [auth C] Focus chain T [auth C] Focus chain U [auth C] Focus chain V [auth A] Focus chain W [auth A] Focus chain X [auth A] Interactions & Density Focus chain P [auth B] Focus chain Q [auth B] Focus chain R [auth B] Focus chain S [auth C] Focus chain T [auth C] Focus chain U [auth C] Focus chain V [auth A] Focus chain W [auth A] Focus chain X [auth A]