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 11LP | pdb_000011lp

Mouse monoclonal antibody A11 in complex with rabies virus glycoprotein


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.92 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 11LP

This is version 1.1 of the entry. See complete history. 

Literature

Antigenic landscape of rabies and related lyssaviruses revealed by cryo-EM.

Callaway, H.M., Zyla, D.S., Hastie, K.M., Harkins, S.S., Kothalawalage, S., Samarasinghe, N., Flynn, A., Hariharan, C., Yin, J., Corti, D., Bourhy, H., Dessain, S.K., Saphire, E.O.

(2026) Cell Rep 45: 117993-117993

  • DOI: https://doi.org/10.1016/j.celrep.2026.117993
  • Primary Citation Related Structures: 
    11IW, 11LP, 11LQ, 11LR, 11LS

  • PubMed Abstract: 

    Rabies continues to kill over 60,000 people per year despite life-saving vaccines and post-exposure treatments and costs billions of dollars in prevention and treatment. Preventing rabies deaths and reducing the global economic burden of the virus will require both developing a monoclonal antibody cocktail to replace human serum in treatment and improving rabies vaccines to elicit long-lasting protection. Here, we solve nine cryo-electron microscopy (cryo-EM) structures of neutralizing monoclonal antibodies (mAbs) in complex with the rabies virus glycoprotein (RABV-G). The nine structures span three known antigenic sites plus two additional antigenic sites, not among the five classically identified sites. We find that these antigenic sites, V and VI, are broadly cross-reactive across lyssaviruses, whereas immunodominant sites II/IV and III are rabies specific. Across the mAb panel, fusion inhibition and binding affinity correlate best with neutralization. Together, these results provide a roadmap for structure-guided vaccine and therapeutic antibody design for rabies and related lyssaviruses.


  • Organizational Affiliation: 
    • Center for Vaccine Innovation, La Jolla Institute for Immunology, La Jolla, CA 92037, USA; Department of Chemistry and Biochemistry, Montana State University, Bozeman, MT 59717, USA; Department of Microbiology and Cell Biology, Montana State University, Bozeman, MT 59717, USA. Electronic address: heather.callaway@montana.edu.

Macromolecule Content 

  • Total Structure Weight: 468.39 kDa 
  • Atom Count: 19,176 
  • Modeled Residue Count: 2,451 
  • Deposited Residue Count: 4,278 
  • Unique protein chains: 5

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Monoclonal Antibody RVA122 Light ChainA [auth F],
E [auth D],
F [auth H]
217Homo sapiensMutation(s): 0 
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Reference Sequence
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Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Monoclonal Antibody A11 Heavy ChainB [auth M],
K,
L [auth O]
262Mus musculusMutation(s): 0 
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Reference Sequence
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Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
Monoclonal Antibody RVA122 Heavy ChainC [auth G],
I,
J [auth E]
265Homo sapiensMutation(s): 0 
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Reference Sequence
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Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
GlycoproteinD [auth B],
G [auth C],
H [auth A]
468Lyssavirus rabiesMutation(s): 0 
UniProt
Find proteins for P08667 (Rabies virus (strain Pasteur vaccins / PV))
Explore P08667 
Go to UniProtKB:  P08667
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP08667
Glycosylation
Glycosylation Sites: 3
Sequence Annotations
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Reference Sequence
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Entity ID: 5
MoleculeChains  Sequence LengthOrganismDetailsImage
Monoclonal Antibody A11 Light ChainM [auth L],
N [auth J],
O [auth N]
214Mus musculusMutation(s): 0 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
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Reference Sequence

Small Molecules

Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
NAG

Query on NAG



Download:Ideal Coordinates CCD File
P [auth B]
Q [auth B]
R [auth B]
S [auth C]
T [auth C]
P [auth B],
Q [auth B],
R [auth B],
S [auth C],
T [auth C],
U [auth C],
V [auth A],
W [auth A],
X [auth A]
2-acetamido-2-deoxy-beta-D-glucopyranose
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
UNK
Query on UNK
M [auth L],
N [auth J],
O [auth N]
L-PEPTIDE LINKINGC4 H9 N O2

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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.92 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.19_4092
RECONSTRUCTIONcryoSPARC

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Other privateUnited States--
Other privateUnited States--

Revision History  (Full details and data files)

  • Version 1.0: 2026-08-19
    Type: Initial release
  • Version 1.1: 2026-09-30
    Changes: Data collection, Database references