10DK | pdb_000010dk

Structure of an adenovirus hexon with Zwitterionic insertion in HVR5


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.22 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

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Literature

Immune shielding of viral vectors via capsid engineering with genetically encoded zwitterionic peptides.

Lu, S.C.Ma, O.X.Anwar, A.A.Ratkov, D.Bhandari, J.Montiel-Garcia, D.J.Hansen, M.J.Barry, M.E.Reddy, V.S.Barry, M.A.

(2026) Mol Ther Adv 34: 201694-201694

  • DOI: https://doi.org/10.1016/j.omta.2026.201694
  • Primary Citation Related Structures: 
    10BU, 10DK, 10DP

  • PubMed Abstract: 

    Pre-existing neutralizing antibodies (NAbs) and blood proteins can rapidly inactivate therapeutic viral vectors and trigger immune toxicities in patients. To overcome these challenges, we engineered the surfaces of adenovirus (Ad) by incorporating genetically encoded "protective shields" to reduce the recognition by host factors. AlphaFold3 modeling showed that inserting a structured biotin acceptor peptide (BAP) into hypervariable region 5 (HVR5) of the viral capsid protein hexon produced a rigid surface protrusion, whereas inserting a disordered, zwitterionic glutamic acid-lysine (EK) peptide formed a flexible canopy over the hexon. Although inserting EK peptides into the capsid impaired viral entry and intracellular trafficking that led to reduced viral transduction in vitro and in vivo , this modification decreased binding by coagulation factor X (FX) and complement C3. Importantly, the EK peptide-modified Ad also evaded polyclonal anti-Ad NAbs without the need to change all HVRs. The shielding efficiency of EK peptides was affected by their composition and length. Cryoelectron microscopy (cryo-EM) and neutralization assays further revealed that NAbs primarily target HVR1, a region potentially masked by EK peptides inserted in HVR5. These findings demonstrate an alternative capsid engineering approach using genetically encoded peptides to enhance immune stealth of viral vectors.


  • Organizational Affiliation
    • Division of Infectious Diseases, Department of Medicine, Mayo Clinic, Rochester, MN 55905, USA.

Macromolecule Content 

  • Total Structure Weight: 313.13 kDa 
  • Atom Count: 21,963 
  • Modeled Residue Count: 2,764 
  • Deposited Residue Count: 2,778 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Hexon protein
A, B, C
926Human adenovirus 57Mutation(s): 0 
Gene Names: L3
UniProt
Find proteins for A0A348FV85 (Human adenovirus 57)
Explore A0A348FV85 
Go to UniProtKB:  A0A348FV85
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A348FV85
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.22 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.18.2-3874
RECONSTRUCTIONcryoSPARC4.2

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2026-05-27
    Type: Initial release