10AY | pdb_000010ay

Cryo-EM structure of CRBN-DDB1 in complex with HBS1L and TNG961


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Models: experimental
View more details

wwPDB Validation 3D Report Full Report

Validation slider image for 10AY

This is version 1.1 of the entry. See complete history

Literature

TNG961 is a selective oral HBS1L molecular glue degrader for the treatment of FOCAD-deleted cancers.

Nicholson, H.E.Whittington, D.A.Bruzzese, F.J.Lazarides, K.Martires, L.C.M.Tonini, M.R.Jenkins, H.N.Zhang, M.Shahagadkar, P.Pratt, C.B.Briggs, K.J.McCarren, P.Tsai, A.Bandi, M.Min, C.Huang, A.Zhang, H.Meier, S.R.Shen, B.Yu, Y.Liang, C.Liu, Y.Teng, T.Zhang, J.Crystal, A.Mallender, W.D.Wu, X.E.Maxwell, J.P.Andersen, J.N.

(2026) Cancer Discov 

  • DOI: https://doi.org/10.1158/2159-8290.CD-26-0040
  • Primary Citation Related Structures: 
    10AY, 11MR

  • PubMed Abstract: 

    When tumor suppressor genes are lost through chromosomal deletion, deletion of adjacent genes can generate therapeutic vulnerabilities. MTAP is frequently co-deleted with the Chr9p21 tumor suppressor gene CDKN2A, creating synthetic lethal dependency on PRMT5. Telomeric to MTAP lies FOCAD, whose loss induces dependency on the HBS1L/PELO ribosome-rescue complex for translational maintenance. FOCAD is deleted in ~1/3 of MTAP-deleted cancers. We screened an IMiD-focused diversity library and identified a weak hit that bound cereblon, promoted HBS1L-CRBN-compound complex formation, and induced E3-ligase-dependent HBS1L ubiquitination and degradation. Guided by cryo-EM structures and proteome selectivity we developed TNG961, a potent, selective HBS1L degrader that disrupts the HBS1L/PELO complex, inducing translational arrest, unfolded protein response activation, and growth inhibition in FOCAD-negative models. Oral administration of TNG961 regresses FOCAD-negative xenografts, including PRMT5 inhibitor-refractory models, establishing HBS1L degradation as a strategy to exploit FOCAD loss and supporting clinical evaluation of TNG961 as a first-in-class precision oncology therapeutic.


  • Organizational Affiliation
    • Tango Therapeutics (United States) Boston United States.

Macromolecule Content 

  • Total Structure Weight: 394.06 kDa 
  • Atom Count: 20,140 
  • Modeled Residue Count: 2,524 
  • Deposited Residue Count: 3,504 
  • Unique protein chains: 3

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
HBS1-like protein
A, D
208Homo sapiensMutation(s): 0 
Gene Names: HBS1LHBS1KIAA1038
EC: 3.6.5
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y450 (Homo sapiens)
Explore Q9Y450 
Go to UniProtKB:  Q9Y450
PHAROS:  Q9Y450
GTEx:  ENSG00000112339 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9Y450
Sequence Annotations
Expand
Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Protein cereblon
B, E
404Homo sapiensMutation(s): 0 
Gene Names: CRBNAD-006
UniProt & NIH Common Fund Data Resources
Find proteins for Q96SW2 (Homo sapiens)
Explore Q96SW2 
Go to UniProtKB:  Q96SW2
PHAROS:  Q96SW2
GTEx:  ENSG00000113851 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ96SW2
Sequence Annotations
Expand
Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
DNA damage-binding protein 1
C, F
1,140Homo sapiensMutation(s): 0 
Gene Names: DDB1XAP1
UniProt & NIH Common Fund Data Resources
Find proteins for Q16531 (Homo sapiens)
Explore Q16531 
Go to UniProtKB:  Q16531
PHAROS:  Q16531
GTEx:  ENSG00000167986 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ16531
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION5.0
MODEL REFINEMENTPHENIX1.20.1_4487

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Other private--

Revision History  (Full details and data files)

  • Version 1.0: 2026-04-22
    Type: Initial release
  • Version 1.1: 2026-05-06
    Changes: Data collection, Database references