RCSB PDB: Search

3WKW \| pdb_00003wkw	Download File View File

Crystal structure of GH127 beta-L-arabinofuranosidase HypBA1 from Bifidobacterium longum ligand free form

Ito, T., Saikawa, K., Arakawa, T., Wakagi, T., Fujita, K.

(2014) Biochem Biophys Res Commun 447: 32-37

Released	2014-04-30
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bifidobacterium longum subsp. longum JCM 1217
Macromolecule	Non-reducing end beta-L-arabinofuranosidase (protein)

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3WKX \| pdb_00003wkx	Download File View File

Crystal structure of GH127 beta-L-arabinofuranosidase HypBA1 from Bifidobacterium longum arabinose complex form

Ito, T., Saikawa, K., Arakawa, T., Wakagi, T., Fujita, K.

(2014) Biochem Biophys Res Commun 447: 32-37

Released	2014-04-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bifidobacterium longum subsp. longum JCM 1217
Macromolecule	Non-reducing end beta-L-arabinofuranosidase (protein)
Unique Ligands	FUB, ZN

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3WRE \| pdb_00003wre	Download File View File

The crystal structure of native HypBA1 from Bifidobacterium longum JCM 1217

Huang, C.H., Zhu, Z., Cheng, Y.S., Chan, H.C., Ko, T.P., Chen, C.C., Wang, I., Ho, M.R., Hsu, S.T., Zeng, Y.F., Huang, Y.N., Liu, J.R., Guo, R.T.

(2014) J Bioprocess Biotech 4: 1000171-1000171

Released	2014-09-03
Method	X-RAY DIFFRACTION 2.78 Å
Organisms	Bifidobacterium longum subsp. longum JCM 1217
Macromolecule	Non-reducing end beta-L-arabinofuranosidase (protein)
Unique Ligands	ZN

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3WRF \| pdb_00003wrf	Download File View File

The crystal structure of native HypBA1 from Bifidobacterium longum JCM 1217

Huang, C.H., Zhu, Z., Cheng, Y.S., Chan, H.C., Ko, T.P., Chen, C.C., Wang, I., Ho, M.R., Hsu, S.T., Zeng, Y.F., Huang, Y.N., Liu, J.R., Guo, R.T.

(2014) J Bioprocess Biotech 4: 1000171-1000171

Released	2014-09-03
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Bifidobacterium longum subsp. longum JCM 1217
Macromolecule	Non-reducing end beta-L-arabinofuranosidase (protein)

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3WRG \| pdb_00003wrg	Download File View File

The complex structure of HypBA1 with L-arabinose

Huang, C.H., Zhu, Z., Cheng, Y.S., Chan, H.C., Ko, T.P., Chen, C.C., Wang, I., Ho, M.R., Hsu, S.T., Zeng, Y.F., Huang, Y.N., Liu, J.R., Guo, R.T.

(2014) J Bioprocess Biotech 4: 1000171-1000171

Released	2014-09-03
Method	X-RAY DIFFRACTION 2.23 Å
Organisms	Bifidobacterium longum subsp. longum JCM 1217
Macromolecule	Non-reducing end beta-L-arabinofuranosidase (protein)
Unique Ligands	FUB, ZN

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5MQO \| pdb_00005mqo	Download File View File

Glycoside hydrolase BT_1003

Basle, A., Ndeh, D., Rogowski, A., Cartmell, A., Luis, A.S., Venditto, I., Labourel, A., Gilbert, H.J.

(2017) Nature 544: 65-70

Released	2017-03-22
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Bacteroides thetaiotaomicron
Macromolecule	Non-reducing end beta-L-arabinofuranosidase (protein)

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7BZL \| pdb_00007bzl	Download File View File

GH127 beta-L-arabinofuranosidase HypBA1 covalently complexed with beta-L-arabinofuranose-configured cyclophellitol

Amaki, S., McGregor, N.G.S., Arakawa, T., Yamada, C., Borlandelli, V., Overkleeft, H.S., Davies, G.J., Fushinobu, S.

(2021) Angew Chem Int Ed Engl 60: 5754-5758

Released	2021-01-27
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bifidobacterium longum subsp. longum JCM 1217
Macromolecule	Non-reducing end beta-L-arabinofuranosidase (protein)
Unique Ligands	FE0, ZN

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7DIF \| pdb_00007dif	Download File View File

GH127 beta-L-arabinofuranosidase HypBA1 covalently complexed with beta-L-arabinofuranose-configured cyclophellitol at 1.75-angstrom resolution

Amaki, S., McGregor, N.G.S., Arakawa, T., Yamada, C., Borlandelli, V., Overkleeft, H.S., Davies, G.J., Fushinobu, S.

(2021) Angew Chem Int Ed Engl 60: 5754-5758

Released	2021-01-27
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Bifidobacterium longum subsp. longum JCM 1217
Macromolecule	Non-reducing end beta-L-arabinofuranosidase (protein)
Unique Ligands	FE0, K, ZN

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7EXU \| pdb_00007exu	Download File View File

GH127 beta-L-arabinofuranosidase HypBA1 E322Q mutant complexed with p-nitrophenyl beta-L-arabinofuranoside

Maruyama, S., Arakawa, T., Yamada, C., Fujita, K., Fushinobu, S.

(2022) Glycobiology 32: 171-180

Released	2021-11-17
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bifidobacterium longum subsp. longum JCM 1217
Macromolecule	Non-reducing end beta-L-arabinofuranosidase (protein)
Unique Ligands	07Y, ZN

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7EXV \| pdb_00007exv	Download File View File

GH127 beta-L-arabinofuranosidase HypBA1 covalently complexed with beta-L-arabinofuranoylamide

Sawano, K., Arakawa, T., Yamada, C., Fujita, K., Fushinobu, S.

(2022) Glycobiology 32: 171-180

Released	2021-11-17
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Bifidobacterium longum subsp. longum JCM 1217
Macromolecule	Non-reducing end beta-L-arabinofuranosidase (protein)
Unique Ligands	08U, ZN

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7EXW \| pdb_00007exw	Download File View File

GH127 beta-L-arabinofuranosidase HypBA1 covalently complexed with alpha-L-arabinofuranosylamide

Sawano, K., Arakawa, T., Yamada, C., Fujita, K., Fushinobu, S.

(2022) Glycobiology 32: 171-180

Released	2021-11-17
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bifidobacterium longum subsp. longum JCM 1217
Macromolecule	Non-reducing end beta-L-arabinofuranosidase (protein)
Unique Ligands	09X, ZN

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8K7X \| pdb_00008k7x	Download File View File

Crystal structure of GH146 beta-L-arabinofuranosidase Bll3HypBA1 (amino acids 380-1223) in complex with Tris

Pan, L., Maruyama, S., Miyake, M., Fujita, K., Fushinobu, S.

(2024) Appl Microbiol Biotechnol 108: 199-199

Released	2024-02-21
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Bifidobacterium longum subsp. longum JCM 1217
Macromolecule	beta-L-arabinofuranosidase (protein)
Unique Ligands	GOL, MG, NA, TRS, ZN

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8K7Y \| pdb_00008k7y	Download File View File

Crystal structure of GH146 beta-L-arabinofuranosidase Bll3HypBA1 (amino acids 380-1051), ligand-free form

Maruyama, S., Pan, L., Miyake, M., Fujita, K., Fushinobu, S.

(2024) Appl Microbiol Biotechnol 108: 199-199

Released	2024-02-21
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Bifidobacterium longum subsp. longum JCM 1217
Macromolecule	beta1,3-L-arabinofuranoside (protein)
Unique Ligands	ZN

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8QF2 \| pdb_00008qf2	Download File View File

Beta-L-Arabinofurano-cyclitol Aziridines are Cysteine-directed Broad-spectrum Inhibitors and Activity-based Probes for Retaining Beta-L-arabinofuranosidases

Borlandelli, V., Offen, W.A., Moroz, O., Nin-Hill, A., McGregor, N., Binkhorst, L., Armstrong, Z., Ishiwata, A., Artola, M., Rovira, C., Davies, G.J., Overkleeft, H.

(2023) ACS Chem Biol 18: 2564-2573

Released	2023-12-13
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Bifidobacterium longum
Macromolecule	Non-reducing end beta-L-arabinofuranosidase (protein)
Unique Ligands	UI5, ZN

3WKW | pdb_00003wkw

Crystal structure of GH127 beta-L-arabinofuranosidase HypBA1 from Bifidobacterium longum ligand free form

3WKX | pdb_00003wkx

Crystal structure of GH127 beta-L-arabinofuranosidase HypBA1 from Bifidobacterium longum arabinose complex form

3WRE | pdb_00003wre

The crystal structure of native HypBA1 from Bifidobacterium longum JCM 1217

3WRF | pdb_00003wrf

The crystal structure of native HypBA1 from Bifidobacterium longum JCM 1217

3WRG | pdb_00003wrg

The complex structure of HypBA1 with L-arabinose

5MQO | pdb_00005mqo

Glycoside hydrolase BT_1003

7BZL | pdb_00007bzl

GH127 beta-L-arabinofuranosidase HypBA1 covalently complexed with beta-L-arabinofuranose-configured cyclophellitol

7DIF | pdb_00007dif

GH127 beta-L-arabinofuranosidase HypBA1 covalently complexed with beta-L-arabinofuranose-configured cyclophellitol at 1.75-angstrom resolution

7EXU | pdb_00007exu

GH127 beta-L-arabinofuranosidase HypBA1 E322Q mutant complexed with p-nitrophenyl beta-L-arabinofuranoside

7EXV | pdb_00007exv

GH127 beta-L-arabinofuranosidase HypBA1 covalently complexed with beta-L-arabinofuranoylamide

7EXW | pdb_00007exw

GH127 beta-L-arabinofuranosidase HypBA1 covalently complexed with alpha-L-arabinofuranosylamide

8K7X | pdb_00008k7x

Crystal structure of GH146 beta-L-arabinofuranosidase Bll3HypBA1 (amino acids 380-1223) in complex with Tris

8K7Y | pdb_00008k7y

Crystal structure of GH146 beta-L-arabinofuranosidase Bll3HypBA1 (amino acids 380-1051), ligand-free form

8QF2 | pdb_00008qf2

Beta-L-Arabinofurano-cyclitol Aziridines are Cysteine-directed Broad-spectrum Inhibitors and Activity-based Probes for Retaining Beta-L-arabinofuranosidases

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3WKW | pdb_00003wkw

3WKX | pdb_00003wkx

3WRE | pdb_00003wre

3WRF | pdb_00003wrf

3WRG | pdb_00003wrg

5MQO | pdb_00005mqo

7BZL | pdb_00007bzl

7DIF | pdb_00007dif

7EXU | pdb_00007exu

7EXV | pdb_00007exv

7EXW | pdb_00007exw

8K7X | pdb_00008k7x

8K7Y | pdb_00008k7y

8QF2 | pdb_00008qf2