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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Enzyme Classification Number = 3.1.2.27

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Search Summary

This query matches 8 Structures.

Refinements

Structure Determination Methodology

experimental (8)

Scientific Name of Source Organism

	Homo sapiens (5)
	Campylobacter jejuni (1)
	Desulfitobacterium hafniense DCB-2 (1)
	Pseudomonas aeruginosa PAO1 (1)

Taxonomy

	Eukaryota (5)
	Bacteria (3)

Experimental Method

X-RAY DIFFRACTION (8)

Polymer Entity Type

Protein (8)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (1)
	2.0 - 2.5 (4)
	2.5 - 3.0 (2)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (2)
	2010 - 2014 (2)
	2015 - 2019 (2)
	2020 - 2024 (1)

Enzyme Classification Name

Hydrolases (1)

Symmetry Type

Asymmetric (8)

SCOP Classification

	All beta proteins (5)
	Alpha and beta proteins (a/b) (1)

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1 to 8 of 8 Structures

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Explore in 3D

1L6M \| pdb_00001l6m	Download File View File

Neutrophil Gelatinase-associated Lipocalin is a Novel Bacteriostatic Agent that Interferes with Siderophore-mediated Iron Acquisition

Goetz, D.H., Borregaard, N., Bluhm, M.E., Raymond, K.N., Strong, R.K.

(2002) Mol Cell 10: 1033-1043

Released	2003-03-11
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Neutrophil gelatinase-associated lipocalin (protein)
Unique Ligands	DBH, DBS, FE, SO4

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3BY0 \| pdb_00003by0	Download File View File

Crystal structure of Siderocalin (NGAL, Lipocalin 2) W79A-R81A complexed with Ferric Enterobactin

Clifton, M.C., Pizzaro, J.C., Strong, R.K.

(2008) J Am Chem Soc 130: 11524-11534

Released	2008-09-09
Method	X-RAY DIFFRACTION 2.572 Å
Organisms	Homo sapiens
Macromolecule	Neutrophil gelatinase-associated lipocalin (protein)
Unique Ligands	DBH, DBS, FE, GOL, SO4

Explore in 3D

3CBC \| pdb_00003cbc	Download File View File

Crystal structure of Siderocalin (NGAL, Lipocalin 2) Y106F complexed with Ferric Enterobactin

Clifton, M.C., Pizaro, J.C., Strong, R.K.

(2008) J Am Chem Soc 130: 11524-11534

Released	2008-09-09
Method	X-RAY DIFFRACTION 2.17 Å
Organisms	Homo sapiens
Macromolecule	Neutrophil gelatinase-associated lipocalin (protein)
Unique Ligands	DBS, GOL, NA, SO4

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3K3L \| pdb_00003k3l	Download File View File

Crystal structure of Siderocalin (NGAL, Lipocalin 2) complexed with apo Enterobactin

Clifton, M.C.

To be published

Released	2010-08-18
Method	X-RAY DIFFRACTION 2.62 Å
Organisms	Homo sapiens
Macromolecule	Neutrophil gelatinase-associated lipocalin (protein)
Unique Ligands	CL, DBH, DBS, GOL, MCK, NA, SO4

Explore in 3D

3T1D \| pdb_00003t1d	Download File View File

The mutant structure of human Siderocalin W79A, R81A, Y106F bound to Enterobactin

Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2019) J Struct Biol X 2: 100008-100008

Released	2011-08-17
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Neutrophil gelatinase-associated lipocalin (protein)
Unique Ligands	CL, DBH, DBS, GOL, TD1, UNX

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5ADV \| pdb_00005adv	Download File View File

The Periplasmic Binding Protein CeuE of Campylobacter jejuni preferentially binds the iron(III) complex of the Linear Dimer Component of Enterobactin

Raines, D.J., Moroz, O.V., Turkenburg, J.P., Wilson, K.S., Duhme-Klair, A.K.

(2016) Proc Natl Acad Sci U S A 113: 5850

Released	2016-05-25
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Campylobacter jejuni
Macromolecule	ENTEROCHELIN UPTAKE PERIPLASMIC BINDING PROTEIN (protein)
Unique Ligands	DBS, DMS, EHS, FE

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6GI1 \| pdb_00006gi1	Download File View File

Crystal structure of the ferric enterobactin esterase (pfeE) mutant(S157A) from Pseudomonas aeruginosa in presence of enterobactin

Moynie, L., Naismith, J.H.

(2018) ACS Chem Biol 13: 2603-2614

Released	2018-06-20
Method	X-RAY DIFFRACTION 1.66 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	Ferric enterobactin esterase (protein)
Unique Ligands	DBS, EB4, EDO, FE, NO3

Explore in 3D

7SF6 \| pdb_00007sf6	Download File View File

Crystal Structure of Siderophore Binding Protein FatB from Desulfitobacterium hafniense

Kim, Y., Patel, H.P., Nordquist, K.A., Schaab, K.M., Sha, J., Babnigg, G., Bond, A.H., Joachimiak, A., Midwest Center for Structural Genomics, Midwest Center for Structural Genomics (MCSG)

To be published

Released	2021-12-15
Method	X-RAY DIFFRACTION 1.46 Å
Organisms	Desulfitobacterium hafniense DCB-2
Macromolecule	Ferric-anguibactin-binding protein FatB (protein)
Unique Ligands	CL, DBS, EDO, FE, GOL

1 to 8 of 8 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1L6M | pdb_00001l6m

Neutrophil Gelatinase-associated Lipocalin is a Novel Bacteriostatic Agent that Interferes with Siderophore-mediated Iron Acquisition

3BY0 | pdb_00003by0

Crystal structure of Siderocalin (NGAL, Lipocalin 2) W79A-R81A complexed with Ferric Enterobactin

3CBC | pdb_00003cbc

Crystal structure of Siderocalin (NGAL, Lipocalin 2) Y106F complexed with Ferric Enterobactin

3K3L | pdb_00003k3l

Crystal structure of Siderocalin (NGAL, Lipocalin 2) complexed with apo Enterobactin

3T1D | pdb_00003t1d

The mutant structure of human Siderocalin W79A, R81A, Y106F bound to Enterobactin

5ADV | pdb_00005adv

The Periplasmic Binding Protein CeuE of Campylobacter jejuni preferentially binds the iron(III) complex of the Linear Dimer Component of Enterobactin

6GI1 | pdb_00006gi1

Crystal structure of the ferric enterobactin esterase (pfeE) mutant(S157A) from Pseudomonas aeruginosa in presence of enterobactin

7SF6 | pdb_00007sf6

Crystal Structure of Siderophore Binding Protein FatB from Desulfitobacterium hafniense

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1L6M | pdb_00001l6m

3BY0 | pdb_00003by0

3CBC | pdb_00003cbc

3K3L | pdb_00003k3l

3T1D | pdb_00003t1d

5ADV | pdb_00005adv

6GI1 | pdb_00006gi1

7SF6 | pdb_00007sf6