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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Enzyme Classification Number = 1.2.1.15

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Search Summary

This query matches 20 Structures.

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Structure Determination Methodology

experimental (20)

Scientific Name of Source Organism

	Saccharomyces cerevisiae (11)
	Mus musculus (10)
	Homo sapiens (6)
	synthetic construct (6)
	Saccharomyces cerevisiae S288C (3)
	Rattus norvegicus (1)

Taxonomy

	Eukaryota (20)
	other sequences (6)

Experimental Method

	ELECTRON MICROSCOPY (19)
	X-RAY DIFFRACTION (1)

Polymer Entity Type

	Protein (20)
	DNA (6)

Refinement Resolution (Å)

	2.5 - 3.0 (1)
	3.0 - 3.5 (1)
	3.5 - 4.0 (1)
	4.0 - 4.5 (2)
	> 4.5 (15)

Release Date

	2015 - 2019 (14)
	2020 - 2024 (6)

Enzyme Classification Name

	Hydrolases (13)
	Transferases (3)

Membrane Protein Annotation

OPM (1)

Symmetry Type

	Asymmetric (15)
	Cyclic (4)
	Icosahedral (1)

AllSelected

1 to 20 of 20 Structures

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5A1U \| pdb_00005a1u	Download File View File

The structure of the COPI coat triad

Dodonova, S.O., Diestelkoetter-Bachert, P., von Appen, A., Hagen, W.J.H., Beck, R., Beck, M., Wieland, F., Briggs, J.A.G.

(2015) Science 349: 195

Released	2015-07-08
Method	ELECTRON MICROSCOPY 13 Å
Organisms	Mus musculus Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 7

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5A1V \| pdb_00005a1v	Download File View File

The structure of the COPI coat linkage I

Dodonova, S.O., Diestelkoetter-Bachert, P., von Appen, A., Hagen, W.J.H., Beck, R., Beck, M., Wieland, F., Briggs, J.A.G.

(2015) Science 349: 195

Released	2015-07-08
Method	ELECTRON MICROSCOPY 21 Å
Organisms	Mus musculus Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 8

Explore in 3D

5A1W \| pdb_00005a1w	Download File View File

The structure of the COPI coat linkage II

Dodonova, S.O., Diestelkoetter-Bachert, P., von Appen, A., Hagen, W.J.H., Beck, R., Beck, M., Wieland, F., Briggs, J.A.G.

(2015) Science 349: 195

Released	2015-07-08
Method	ELECTRON MICROSCOPY 18 Å
Organisms	Mus musculus Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 7

Explore in 3D

5A1X \| pdb_00005a1x	Download File View File

The structure of the COPI coat linkage III

Dodonova, S.O., Diestelkoetter-Bachert, P., von Appen, A., Hagen, W.J.H., Beck, R., Beck, M., Wieland, F., Briggs, J.A.G.

(2015) Science 349: 195

Released	2015-07-08
Method	ELECTRON MICROSCOPY 23 Å
Organisms	Mus musculus Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 7

Explore in 3D

5A1Y \| pdb_00005a1y	Download File View File

The structure of the COPI coat linkage IV

Dodonova, S.O., Diestelkoetter-Bachert, P., von Appen, A., Hagen, W.J.H., Beck, R., Beck, M., Wieland, F., Briggs, J.A.G.

(2015) Science 349: 195

Released	2015-07-08
Method	ELECTRON MICROSCOPY 21 Å
Organisms	Mus musculus Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 8

Explore in 3D

5AHV \| pdb_00005ahv	Download File View File

Cryo-EM structure of helical ANTH and ENTH tubules on PI(4,5)P2-containing membranes

Skruzny, M., Desfosses, A., Prinz, S., Dodonova, S.O., Gieras, A., Uetrecht, C., Jakobi, A.J., Abella, M., Hagen, W.J.H., Schulz, J., Meijers, R., Rybin, V., Briggs, J.A.G., Sachse, C., Kaksonen, M.

(2015) Dev Cell 33: 150

Released	2015-05-06
Method	ELECTRON MICROSCOPY 13.6 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	ANTH DOMAIN OF ENDOCYTIC ADAPTOR SLA2 (protein) ENTH DOMAIN OF EPSIN ENT1 (protein)

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5NZR \| pdb_00005nzr	Download File View File

The structure of the COPI coat leaf

Dodonova, S.O., Aderhold, P., Kopp, J., Ganeva, I., Roehling, S., Hagen, W.J.H., Sinning, I., Wieland, F., Briggs, J.A.G.

(2017) Elife 6:

Released	2017-06-28
Method	ELECTRON MICROSCOPY 9.2 Å
Organisms	Mus musculus Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 7

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5NZS \| pdb_00005nzs	Download File View File

The structure of the COPI coat leaf in complex with the ArfGAP2 uncoating factor

Dodonova, S.O., Aderhold, P., Kopp, J., Ganeva, I., Roehling, S., Hagen, W.J.H., Sinning, I., Wieland, F., Briggs, J.A.G.

(2017) Elife 6:

Released	2017-06-28
Method	ELECTRON MICROSCOPY 10.1 Å
Organisms	Mus musculus Rattus norvegicus Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 8

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5NZT \| pdb_00005nzt	Download File View File

The structure of the COPI coat linkage I

Dodonova, S.O., Aderhold, P., Kopp, J., Ganeva, I., Roehling, S., Hagen, W.J.H., Sinning, I., Wieland, F., Briggs, J.A.G.

(2017) Elife 6:

Released	2017-06-28
Method	ELECTRON MICROSCOPY 17 Å
Organisms	Mus musculus Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 8

Explore in 3D

5NZU \| pdb_00005nzu	Download File View File

The structure of the COPI coat linkage II

Dodonova, S.O., Aderhold, P., Kopp, J., Ganeva, I., Roehling, S., Hagen, W.J.H., Sinning, I., Wieland, F., Briggs, J.A.G.

(2017) Elife 6:

Released	2017-06-28
Method	ELECTRON MICROSCOPY 15 Å
Organisms	Mus musculus Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 7

Explore in 3D

5NZV \| pdb_00005nzv	Download File View File

The structure of the COPI coat linkage IV

Dodonova, S.O., Aderhold, P., Kopp, J., Ganeva, I., Roehling, S., Hagen, W.J.H., Sinning, I., Wieland, F., Briggs, J.A.G.

(2017) Elife 6:

Released	2017-06-28
Method	ELECTRON MICROSCOPY 17.3 Å
Organisms	Mus musculus Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 8

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6R22 \| pdb_00006r22	Download File View File

The structure of a Ty3 retrotransposon capsid N-terminal domain dimer

Dodonova, S.O., Prinz, S., Bilanchone, V., Sandmeyer, S., Briggs, J.A.G.

(2019) Proc Natl Acad Sci U S A 116: 10048-10057

Released	2019-05-08
Method	ELECTRON MICROSCOPY 5.5 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Transposon Ty3-I Gag-Pol polyprotein (protein)

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6R23 \| pdb_00006r23	Download File View File

The structure of a Ty3 retrotransposon capsid C-terminal domain dimer

Dodonova, S.O., Prinz, S., Bilanchone, V., Sandmeyer, S., Briggs, J.A.G.

(2019) Proc Natl Acad Sci U S A 116: 10048-10057

Released	2019-05-08
Method	ELECTRON MICROSCOPY 4.9 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Transposon Ty3-I Gag-Pol polyprotein (protein)

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6R24 \| pdb_00006r24	Download File View File

The structure of a Ty3 retrotransposon icosahedral capsid

Dodonova, S.O., Prinz, S., Bilanchone, V., Sandmeyer, S., Briggs, J.A.G.

(2019) Proc Natl Acad Sci U S A 116: 10048-10057

Released	2019-05-08
Method	ELECTRON MICROSCOPY 7.5 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Transposon Ty3-I Gag-Pol polyprotein (protein)

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6T78 \| pdb_00006t78	Download File View File

Structure of human Sox11 transcription factor in complex with a short DNA fragment

Dodonova, S.O., Zhu, F., Dienemann, C., Taipale, J., Cramer, P.

(2020) Nature 580: 669-672

Released	2020-04-29
Method	X-RAY DIFFRACTION 2.504 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Transcription factor SOX-11 (protein) DNA (5'-D(APAPCPAPAPAPAPTPAPAPAPCPAPAPTPA)-3') (nucleic acid) DNA (5'-D(TPAPTPTPGPTPTPTPAPTPTPTPTPGPTPT)-3') (nucleic acid)

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6T79 \| pdb_00006t79	Download File View File

Structure of a human nucleosome at 3.2 A resolution

Dodonova, S.O., Zhu, F., Dienemann, C., Taipale, J., Cramer, P.

(2020) Nature 580: 669-672

Released	2020-04-29
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Unique protein chains: 4 Unique nucleic acid chains: 2

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6T7A \| pdb_00006t7a	Download File View File

Structure of human Sox11 transcription factor in complex with a nucleosome

Dodonova, S.O., Zhu, F., Dienemann, C., Taipale, J., Cramer, P.

(2020) Nature 580: 669-672

Released	2020-04-29
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Unique protein chains: 5 Unique nucleic acid chains: 2

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6T7B \| pdb_00006t7b	Download File View File

Structure of human Sox2 transcription factor in complex with a nucleosome

Dodonova, S.O., Zhu, F., Dienemann, C., Taipale, J., Cramer, P.

(2020) Nature 580: 669-672

Released	2020-04-29
Method	ELECTRON MICROSCOPY 5.1 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Unique protein chains: 5 Unique nucleic acid chains: 2

Explore in 3D

6T7C \| pdb_00006t7c	Download File View File

Structure of two copies of human Sox11 transcription factor in complex with a nucleosome

Dodonova, S.O., Zhu, F., Dienemann, C., Taipale, J., Cramer, P.

(2020) Nature 580: 669-672

Released	2020-04-29
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Unique protein chains: 5 Unique nucleic acid chains: 2

Explore in 3D

6T7D \| pdb_00006t7d	Download File View File

Structure of human Sox11 transcription factor in complex with a nucleosome

Dodonova, S.O., Zhu, F., Dienemann, C., Taipale, J., Cramer, P.

(2020) Nature 580: 669-672

Released	2020-04-29
Method	ELECTRON MICROSCOPY 4.4 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Unique protein chains: 5 Unique nucleic acid chains: 2

1 to 20 of 20 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

5A1U | pdb_00005a1u

The structure of the COPI coat triad

5A1V | pdb_00005a1v

The structure of the COPI coat linkage I

5A1W | pdb_00005a1w

The structure of the COPI coat linkage II

5A1X | pdb_00005a1x

The structure of the COPI coat linkage III

5A1Y | pdb_00005a1y

The structure of the COPI coat linkage IV

5AHV | pdb_00005ahv

Cryo-EM structure of helical ANTH and ENTH tubules on PI(4,5)P2-containing membranes

5NZR | pdb_00005nzr

The structure of the COPI coat leaf

5NZS | pdb_00005nzs

The structure of the COPI coat leaf in complex with the ArfGAP2 uncoating factor

5NZT | pdb_00005nzt

The structure of the COPI coat linkage I

5NZU | pdb_00005nzu

The structure of the COPI coat linkage II

5NZV | pdb_00005nzv

The structure of the COPI coat linkage IV

6R22 | pdb_00006r22

The structure of a Ty3 retrotransposon capsid N-terminal domain dimer

6R23 | pdb_00006r23

The structure of a Ty3 retrotransposon capsid C-terminal domain dimer

6R24 | pdb_00006r24

The structure of a Ty3 retrotransposon icosahedral capsid

6T78 | pdb_00006t78

Structure of human Sox11 transcription factor in complex with a short DNA fragment

6T79 | pdb_00006t79

Structure of a human nucleosome at 3.2 A resolution

6T7A | pdb_00006t7a

Structure of human Sox11 transcription factor in complex with a nucleosome

6T7B | pdb_00006t7b

Structure of human Sox2 transcription factor in complex with a nucleosome

6T7C | pdb_00006t7c

Structure of two copies of human Sox11 transcription factor in complex with a nucleosome

6T7D | pdb_00006t7d

Structure of human Sox11 transcription factor in complex with a nucleosome

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

5A1U | pdb_00005a1u

5A1V | pdb_00005a1v

5A1W | pdb_00005a1w

5A1X | pdb_00005a1x

5A1Y | pdb_00005a1y

5AHV | pdb_00005ahv

5NZR | pdb_00005nzr

5NZS | pdb_00005nzs

5NZT | pdb_00005nzt

5NZU | pdb_00005nzu

5NZV | pdb_00005nzv

6R22 | pdb_00006r22

6R23 | pdb_00006r23

6R24 | pdb_00006r24

6T78 | pdb_00006t78

6T79 | pdb_00006t79

6T7A | pdb_00006t7a

6T7B | pdb_00006t7b

6T7C | pdb_00006t7c

6T7D | pdb_00006t7d