RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

235,183 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Enzyme Classification Number = 1.1.1.241

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 18 Structures.

Refinements

Structure Determination Methodology

experimental (18)

Scientific Name of Source Organism

	Streptomyces griseoflavus (11)
	Lama glama (2)
	Beggiatoa leptomitoformis (1)
	Haloarcula marismortui (1)
	Lysobacter capsici (1)
	Streptomyces carpinensis (1)
	Thermus thermophilus (1)

Taxonomy

	Bacteria (15)
	Eukaryota (2)
	Archaea (1)

Experimental Method

X-RAY DIFFRACTION (18)

Polymer Entity Type

	Protein (17)
	RNA (2)

Refinement Resolution (Å)

	1.5 - 2.0 (10)
	2.0 - 2.5 (6)
	2.5 - 3.0 (1)
	3.0 - 3.5 (1)

Release Date

	2015 - 2019 (12)
	2020 - 2024 (5)
	2025 - 2029 (1)

Enzyme Classification Name

Oxidoreductases (11)

Symmetry Type

	Cyclic (13)
	Asymmetric (4)

SCOP Classification

All beta proteins (2)

AllSelected

1 to 18 of 18 Structures

Page 1 of 1

Sort by

Explore in 3D

5MKM \| pdb_00005mkm	Download File View File

Crystal Structure of Two-Domain Laccase mutant H165F from Streptomyces griseoflavus

Gabdulkhakov, A.G., Tishchenko, T.V.

(2019) Int J Mol Sci 20:

Released	2017-12-20
Method	X-RAY DIFFRACTION 1.996 Å
Organisms	Streptomyces griseoflavus
Macromolecule	Two-domain laccase (protein)
Unique Ligands	CU, EDO, GOL, O, OXY, SO4

Explore in 3D

5ML7 \| pdb_00005ml7	Download File View File

CRYSTAL STRUCTURE OF L1-STALK FRAGMENT OF 23S rRNA FROM HALOARCULA MARISMORTUI

Gabdulkhakov, A.G., Tishchenko, T.V., Nevskaya, N.A., Nikonov, S.V.

(2017) Crystals (Basel)

Released	2017-12-20
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Haloarcula marismortui
Macromolecule	23S ribosomal RNA (nucleic acid)
Unique Ligands	CA, MG

Explore in 3D

5NPM \| pdb_00005npm	Download File View File

CRYSTAL STRUCTURE OF MUTANT RIBOSOMAL PROTEIN TTHL1 LACKING 8 N-TERMINAL RESIDUES IN COMPLEX WITH 80NT 23S RNA FROM THERMUS THERMOPHILUS

Gabdulkhakov, A.G., Tishchenko, T.V., Nevskaya, N.A., Nikonov, S.V., Garber, M.B.

(2018) Mol Biol (Mosk) 52: 106-111

Released	2018-05-16
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Thermus thermophilus
Macromolecule	50S ribosomal protein L1 (protein) 23S ribosomal RNA (nucleic acid)
Unique Ligands	MLI, NA

Explore in 3D

5O3K \| pdb_00005o3k	Download File View File

Crystal Structure of mutant M54L/M64L/M96L of Two-Domain Laccase from Streptomyces griseoflavus with 1 mM copper sulfate on growth medium

Gabdulkhakov, A.G., Tishchenko, T.V.

(2018) Mol Biol (Mosk) 52: 29-35

Released	2018-03-28
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Streptomyces griseoflavus
Macromolecule	Two-domain laccase (protein)
Unique Ligands	CU, GOL, O, OXY

Explore in 3D

5O4I \| pdb_00005o4i	Download File View File

Crystal Structure of mutant M54L/M64L/M96L of Two-Domain Laccase from Streptomyces griseoflavus dialyzed against solution containing 0.25 mM copper sulfate

Gabdulkhakov, A.G., Tishchenko, T.V.

(2018) Mol Biol (Mosk) 52: 29-35

Released	2018-03-28
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Streptomyces griseoflavus
Macromolecule	Two-domain laccase (protein)
Unique Ligands	CU, GOL, SO4

Explore in 3D

5O4Q \| pdb_00005o4q	Download File View File

Crystal Structure of mutant M54L/M64L/M96L of Two-Domain Laccase from Streptomyces griseoflavus with 0.25 mM copper sulfate on growth medium

Gabdulkhakov, A.G., Tishchenko, T.V.

(2018) Mol Biol (Mosk) 52: 29-35

Released	2018-03-28
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Streptomyces griseoflavus
Macromolecule	Two-domain laccase (protein)
Unique Ligands	AZI, CU, FMT, GOL, SO4, TRS

Explore in 3D

6FC7 \| pdb_00006fc7	Download File View File

Crystal Structure of Two-Domain Laccase mutant H165F from Streptomyces griseoflavus with high copper ions occupancy

Gabdulkhakov, A.G., Tishchenko, T.V.

(2019) Int J Mol Sci 20:

Released	2019-01-30
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Streptomyces griseoflavus
Macromolecule	Two-domain laccase (protein)
Unique Ligands	CU, GOL, OXY, PER

Explore in 3D

6FDJ \| pdb_00006fdj	Download File View File

Crystal Structure of Two-Domain Laccase mutant H165A from Streptomyces griseoflavus with high copper ions occupancy

Gabdulkhakov, A.G., Tishchenko, T.V.

(2019) Int J Mol Sci 20:

Released	2019-01-30
Method	X-RAY DIFFRACTION 2.308 Å
Organisms	Streptomyces griseoflavus
Macromolecule	Two-domain laccase (protein)
Unique Ligands	CU, GOL, OXY

Explore in 3D

6QKD \| pdb_00006qkd	Download File View File

CRYSTAL STRUCTURE OF vhh-based FAB-fragment of antibody BCD-085

Kostareva, O.S., Kolyadenko, I.A., Ulitin, A.B., Ekimova, V.M., Evdokimov, S.R., Garber, M.B., Tishchenko, T.V., Gabdulkhakov, A.G.

(2019) Crystals (Basel)

Released	2019-07-24
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Lama glama
Macromolecule	FAB HEAVY CHAIN (protein) FAB LIGHT CHAIN (protein)
Unique Ligands	CL, SO4

Explore in 3D

6RBB \| pdb_00006rbb	Download File View File

CRYSTAL STRUCTURE OF the VhH-domain of anti-IL-17A antibody netakimab

Kostareva, O.S., Kolyadenko, I.A., Ulitin, A.B., Ekimova, V.M., Evdokimov, S.R., Garber, M.B., Tishchenko, T.V., Gabdulkhakov, A.G.

To be published

Released	2020-05-13
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Lama glama
Macromolecule	VHH domain of netakimab (protein)

Explore in 3D

6RH9 \| pdb_00006rh9	Download File View File

Crystal Structure of Two-Domain Laccase mutant I170F from Streptomyces griseoflavus

Gabdulkhakov, A.G., Tishchenko, T.V., Kolyadenko, I.A.

(2019) Int J Mol Sci 20:

Released	2019-07-17
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Streptomyces griseoflavus
Macromolecule	Two-domain laccase (protein)
Unique Ligands	CU, EDO, GOL, OXY, SO4

Explore in 3D

6RHQ \| pdb_00006rhq	Download File View File

Crystal Structure of Two-Domain Laccase mutant I170A from Streptomyces griseoflavus

Gabdulkhakov, A.G., Tishchenko, T.V., Kolyadenko, I.A.

(2019) Int J Mol Sci 20:

Released	2019-07-17
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Streptomyces griseoflavus
Macromolecule	Two-domain laccase (protein)
Unique Ligands	CU, GOL, SO4

Explore in 3D

6S0O \| pdb_00006s0o	Download File View File

Crystal Structure of Two-Domain Laccase from Streptomyces griseoflavus produced at 0.25 mM copper sulfate in growth medium

Gabdulkhakov, A.G., Tishchenko, T.V., Kolyadenko, I.A.

(2019) Int J Mol Sci 20:

Released	2019-07-17
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Streptomyces griseoflavus
Macromolecule	Two-domain laccase (protein)
Unique Ligands	CU, EDO, GOL, PEO, SO4

Explore in 3D

6ZIJ \| pdb_00006zij	Download File View File

Crystal Structure of Two-Domain Laccase mutant R240H from Streptomyces griseoflavus

Gabdulkhakov, A.G., Tishchenko, T.V., Kolyadenko, I.A.

(2022) J Biomol Struct Dyn 40: 8324-8331

Released	2021-05-05
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Streptomyces griseoflavus
Macromolecule	Two-domain laccase (protein)
Unique Ligands	CU, EDO, GOL, MG, OXY

Explore in 3D

6ZIP \| pdb_00006zip	Download File View File

Crystal Structure of Two-Domain Laccase mutant R240A from Streptomyces griseoflavus

Gabdulkhakov, A.G., Tishchenko, T.V., Kolyadenko, I.A.

(2022) J Biomol Struct Dyn 40: 8324-8331

Released	2021-05-05
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Streptomyces griseoflavus
Macromolecule	Two-domain laccase (protein)
Unique Ligands	CU, GOL, OXY, PER

Explore in 3D

8AF1 \| pdb_00008af1	Download File View File

Beta-Lytic Protease from Lysobacter capsici

Gabdulkhakov, A.G., Tishchenko, T.V., Kudryakova, I.V., Afoshin, A.S., Vasilyeva, N.V.

(2022) Int J Mol Sci 23:

Released	2023-08-16
Method	X-RAY DIFFRACTION 1.57 Å
Organisms	Lysobacter capsici
Macromolecule	Peptidase M23 (protein)
Unique Ligands	CL, FMT, GOL, ZN

Explore in 3D

8AIP \| pdb_00008aip	Download File View File

Crystal Structure of Two-domain bacterial laccase from the actinobacterium Streptomyces carpinensis VKM Ac-1300

Gabdulkhakov, A.G., Tishchenko, T.V., Trubitsina, L., Trubitsin, I., Leontievsky, A., Lisov, A.

(2023) Biochemistry (Mosc) 88: 1658-1667

Released	2023-08-16
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Streptomyces carpinensis
Macromolecule	Two-Domain Laccase (protein)
Unique Ligands	CU, OXY

Explore in 3D

8ZBD \| pdb_00008zbd	Download File View File

Crystal structure of Persulfide Dioxygenase from Beggiatoa leptomitoformis

Gabdulkhakov, A.G., Tishchenko, T.V., Rudenko, T.S.

(2024) Int J Mol Sci 25:

Released	2025-03-05
Method	X-RAY DIFFRACTION 2.33 Å
Organisms	Beggiatoa leptomitoformis
Macromolecule	MBL fold metallo-hydrolase (protein)
Unique Ligands	FE

1 to 18 of 18 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

5MKM | pdb_00005mkm

Crystal Structure of Two-Domain Laccase mutant H165F from Streptomyces griseoflavus

5ML7 | pdb_00005ml7

CRYSTAL STRUCTURE OF L1-STALK FRAGMENT OF 23S rRNA FROM HALOARCULA MARISMORTUI

5NPM | pdb_00005npm

CRYSTAL STRUCTURE OF MUTANT RIBOSOMAL PROTEIN TTHL1 LACKING 8 N-TERMINAL RESIDUES IN COMPLEX WITH 80NT 23S RNA FROM THERMUS THERMOPHILUS

5O3K | pdb_00005o3k

Crystal Structure of mutant M54L/M64L/M96L of Two-Domain Laccase from Streptomyces griseoflavus with 1 mM copper sulfate on growth medium

5O4I | pdb_00005o4i

Crystal Structure of mutant M54L/M64L/M96L of Two-Domain Laccase from Streptomyces griseoflavus dialyzed against solution containing 0.25 mM copper sulfate

5O4Q | pdb_00005o4q

Crystal Structure of mutant M54L/M64L/M96L of Two-Domain Laccase from Streptomyces griseoflavus with 0.25 mM copper sulfate on growth medium

6FC7 | pdb_00006fc7

Crystal Structure of Two-Domain Laccase mutant H165F from Streptomyces griseoflavus with high copper ions occupancy

6FDJ | pdb_00006fdj

Crystal Structure of Two-Domain Laccase mutant H165A from Streptomyces griseoflavus with high copper ions occupancy

6QKD | pdb_00006qkd

CRYSTAL STRUCTURE OF vhh-based FAB-fragment of antibody BCD-085

6RBB | pdb_00006rbb

CRYSTAL STRUCTURE OF the VhH-domain of anti-IL-17A antibody netakimab

6RH9 | pdb_00006rh9

Crystal Structure of Two-Domain Laccase mutant I170F from Streptomyces griseoflavus

6RHQ | pdb_00006rhq

Crystal Structure of Two-Domain Laccase mutant I170A from Streptomyces griseoflavus

6S0O | pdb_00006s0o

Crystal Structure of Two-Domain Laccase from Streptomyces griseoflavus produced at 0.25 mM copper sulfate in growth medium

6ZIJ | pdb_00006zij

Crystal Structure of Two-Domain Laccase mutant R240H from Streptomyces griseoflavus

6ZIP | pdb_00006zip

Crystal Structure of Two-Domain Laccase mutant R240A from Streptomyces griseoflavus

8AF1 | pdb_00008af1

Beta-Lytic Protease from Lysobacter capsici

8AIP | pdb_00008aip

Crystal Structure of Two-domain bacterial laccase from the actinobacterium Streptomyces carpinensis VKM Ac-1300

8ZBD | pdb_00008zbd

Crystal structure of Persulfide Dioxygenase from Beggiatoa leptomitoformis

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

5MKM | pdb_00005mkm

5ML7 | pdb_00005ml7

5NPM | pdb_00005npm

5O3K | pdb_00005o3k

5O4I | pdb_00005o4i

5O4Q | pdb_00005o4q

6FC7 | pdb_00006fc7

6FDJ | pdb_00006fdj

6QKD | pdb_00006qkd

6RBB | pdb_00006rbb

6RH9 | pdb_00006rh9

6RHQ | pdb_00006rhq

6S0O | pdb_00006s0o

6ZIJ | pdb_00006zij

6ZIP | pdb_00006zip

8AF1 | pdb_00008af1

8AIP | pdb_00008aip

8ZBD | pdb_00008zbd