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234,785 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Xanthomonas euvesicatoria"

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This query matches 8 Structures.

Refinements

Structure Determination Methodology

experimental (8)

Scientific Name of Source Organism

	Xanthomonas euvesicatoria pv. vesicatoria str. 85-10 (4)
	Xanthomonas euvesicatoria (3)
	Homo sapiens (1)
	Nicotiana benthamiana (1)
	Solanum lycopersicum (1)
	Xanthomonas euvesicatoria pv. vesicatoria (strain 85-10) (1)

Taxonomy

	Bacteria (8)
	Eukaryota (3)

Experimental Method

	X-RAY DIFFRACTION (6)
	ELECTRON MICROSCOPY (1)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (8)

Refinement Resolution (Å)

	1.5 - 2.0 (3)
	2.0 - 2.5 (2)
	2.5 - 3.0 (1)
	3.5 - 4.0 (1)

Release Date

	2005 - 2009 (3)
	2010 - 2014 (2)
	2015 - 2019 (2)
	2020 - 2024 (1)

Enzyme Classification Name

Hydrolases (1)

Symmetry Type

Asymmetric (8)

SCOP Classification

	Alpha and beta proteins (a+b) (2)
	Artifacts (2)

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1 to 8 of 8 Structures

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1XS3 \| pdb_00001xs3	Download File View File

Solution Structure Analysis of the XC975 protein

Chin, K.-H., Lin, F.-Y., Hu, Y.-C., Sze, K.-H., Lyu, P.-C., Chou, S.-H.

(2005) J Biomol NMR 31: 167-172

Released	2005-03-29
Method	SOLUTION NMR
Organisms	Xanthomonas euvesicatoria pv. vesicatoria (strain 85-10)
Macromolecule	hypothetical protein XC975 (protein)

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2OIV \| pdb_00002oiv	Download File View File

Structural Analysis of Xanthomonas XopD Provides Insights Into Substrate Specificity of Ubiquitin-like Protein Proteases

Chosed, R., Tomchick, D.R., Brautigam, C.A., Machius, M., Orth, K.

(2007) J Biological Chem 282: 6773-6782

Released	2007-05-29
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Xanthomonas euvesicatoria
Macromolecule	Xanthomonas outer protein D (protein)
Unique Ligands	PO4

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2OIX \| pdb_00002oix	Download File View File

Xanthomonas XopD C470A Mutant

Chosed, R., Tomchick, D.R., Brautigam, C.A., Machius, M., Orth, K.

(2007) J Biological Chem 282: 6773-6782

Released	2007-05-29
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Xanthomonas euvesicatoria
Macromolecule	Xanthomonas outer protein D (protein)

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4FC9 \| pdb_00004fc9	Download File View File

Structure of the C-terminal domain of the type III effector Xcv3220 (XopL)

Singer, A.U., Xu, X., Cui, H., Tan, K., Joachimiak, A., Savchenko, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2012-06-13
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Xanthomonas euvesicatoria pv. vesicatoria str. 85-10
Macromolecule	uncharacterized protein (protein)
Unique Ligands	CL, EDO

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4FCG \| pdb_00004fcg	Download File View File

Structure of the leucine-rich repeat domain of the type III effector XCV3220 (XopL)

Singer, A.U., Xu, X., Cui, H., Zimmerman, M.D., Minor, W., Joachimiak, A., Savchenko, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2012-06-13
Method	X-RAY DIFFRACTION 2 Å
Organisms	Xanthomonas euvesicatoria pv. vesicatoria str. 85-10
Macromolecule	uncharacterized protein (protein)
Unique Ligands	CL, EDO, PO4

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5JP1 \| pdb_00005jp1	Download File View File

Structure of Xanthomonas campestris effector protein XopD bound to tomato SUMO

Pruneda, J.N., Komander, D.

(2016) Mol Cell 63: 261-276

Released	2016-07-27
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Solanum lycopersicum Xanthomonas euvesicatoria pv. vesicatoria str. 85-10
Macromolecule	Small ubiquitin-related modifier (protein) Xanthomonas outer protein D (protein)
Unique Ligands	D1D, MLI

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5JP3 \| pdb_00005jp3	Download File View File

Structure of Xanthomonas campestris effector protein XopD bound to ubiquitin

Pruneda, J.N., Komander, D.

(2016) Mol Cell 63: 261-276

Released	2016-07-27
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens Xanthomonas euvesicatoria pv. vesicatoria str. 85-10
Macromolecule	Polyubiquitin-B (protein) Xanthomonas outer protein D (protein)

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7JLU \| pdb_00007jlu	Download File View File

Structure of the activated Roq1 resistosome directly recognizing the pathogen effector XopQ

Martin, R., Qi, T., Zhang, H., Lui, F., King, M., Toth, C., Nogales, E., Staskawicz, B.J.

(2020) Science 370:

Released	2020-12-02
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Nicotiana benthamiana Xanthomonas euvesicatoria
Macromolecule	Disease resistance protein Roq1 (protein) XopQ (protein)
Unique Ligands	CA

1 to 8 of 8 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1XS3 | pdb_00001xs3

Solution Structure Analysis of the XC975 protein

2OIV | pdb_00002oiv

Structural Analysis of Xanthomonas XopD Provides Insights Into Substrate Specificity of Ubiquitin-like Protein Proteases

2OIX | pdb_00002oix

Xanthomonas XopD C470A Mutant

4FC9 | pdb_00004fc9

Structure of the C-terminal domain of the type III effector Xcv3220 (XopL)

4FCG | pdb_00004fcg

Structure of the leucine-rich repeat domain of the type III effector XCV3220 (XopL)

5JP1 | pdb_00005jp1

Structure of Xanthomonas campestris effector protein XopD bound to tomato SUMO

5JP3 | pdb_00005jp3

Structure of Xanthomonas campestris effector protein XopD bound to ubiquitin

7JLU | pdb_00007jlu

Structure of the activated Roq1 resistosome directly recognizing the pathogen effector XopQ

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1XS3 | pdb_00001xs3

2OIV | pdb_00002oiv

2OIX | pdb_00002oix

4FC9 | pdb_00004fc9

4FCG | pdb_00004fcg

5JP1 | pdb_00005jp1

5JP3 | pdb_00005jp3

7JLU | pdb_00007jlu