RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Source Organism Taxonomy Name (Full Lineage) = "Methanothermobacter marburgensis"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 34 Structures.

Refinements

Structure Determination Methodology

experimental (34)

Scientific Name of Source Organism

	Methanothermobacter marburgensis str. Marburg (23)
	Methanothermobacter marburgensis (11)

Taxonomy

Archaea (34)

Experimental Method

	X-RAY DIFFRACTION (30)
	ELECTRON MICROSCOPY (4)

Polymer Entity Type

Protein (34)

Refinement Resolution (Å)

	1.0 - 1.5 (10)
	1.5 - 2.0 (8)
	2.0 - 2.5 (8)
	2.5 - 3.0 (5)
	3.0 - 3.5 (2)
	4.0 - 4.5 (1)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (1)
	2005 - 2009 (3)
	2010 - 2014 (13)
	2015 - 2019 (8)
	2020 - 2024 (7)
	2025 - 2029 (1)

Enzyme Classification Name

	Transferases (18)
	Oxidoreductases (10)
	Translocases (2)

Membrane Protein Annotation

	PDBTM (3)
	MemProtMD (2)
	mpstruc (2)
	OPM (1)

Symmetry Type

	Cyclic (28)
	Asymmetric (3)
	Dihedral (3)
	Tetrahedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (13)
	All alpha proteins (16)
	Alpha and beta proteins (a/b) (4)
	Membrane and cell surface proteins and peptides (2)

AllSelected

1 to 25 of 34 Structures

Page 1 of 2

Sort by

Explore in 3D

1HBU \| pdb_00001hbu	Download File View File

METHYL-COENZYME M REDUCTASE IN THE MCR-RED1-SILENT STATE IN COMPLEX with COENZYME M

Ermler, U., Grabarse, W.

(2001) J Mol Biology 309: 315

Released	2001-08-16
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Methanothermobacter marburgensis str. Marburg
Macromolecule	METHYL-COENZYME M REDUCTASE I ALPHA SUBUNIT (protein) METHYL-COENZYME M REDUCTASE I BETA SUBUNIT (protein) METHYL-COENZYME M REDUCTASE I GAMMA SUBUNIT (protein)
Unique Ligands	CL, COM, F43, GOL, MG, NA, TP7, ZN

Explore in 3D

1MRO \| pdb_00001mro	Download File View File

METHYL-COENZYME M REDUCTASE

Ermler, U., Grabarse, W.

(1997) Science 278: 1457-1462

Released	1998-11-11
Method	X-RAY DIFFRACTION 1.16 Å
Organisms	Methanothermobacter marburgensis str. Marburg
Macromolecule	METHYL-COENZYME M REDUCTASE (protein)
Unique Ligands	COM, F43, GOL, NA, TP7, ZN

Explore in 3D

1TR8 \| pdb_00001tr8	Download File View File

Crystal Structure of archaeal Nascent Polypeptide-associated Complex (aeNAC)

Spreter, T., Pech, M., Beatrix, B.

(2005) J Biological Chem 280: 15849-15854

Released	2005-02-01
Method	X-RAY DIFFRACTION 2.27 Å
Organisms	Methanothermobacter marburgensis
Macromolecule	conserved protein (MTH177) (protein)

Explore in 3D

2EVU \| pdb_00002evu	Download File View File

Crystal structure of aquaporin AqpM at 2.3A resolution

Lee, J.K., Kozono, D., Remis, J., Kitagawa, Y., Agre, P., Stroud, R.M., Center for Structures of Membrane Proteins (CSMP)

(2005) Proc Natl Acad Sci U S A 102: 18932-18937

Released	2005-12-06
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Methanothermobacter marburgensis str. Marburg
Macromolecule	Aquaporin aqpM (protein)
Unique Ligands	BOG, GOL

Explore in 3D

2F2B \| pdb_00002f2b	Download File View File

Crystal structure of integral membrane protein Aquaporin AqpM at 1.68A resolution

Lee, J.K., Kozono, D., Remis, J., Kitagawa, Y., Agre, P., Stroud, R.M., Center for Structures of Membrane Proteins (CSMP)

(2005) Proc Natl Acad Sci U S A 102: 18932-18937

Released	2005-12-06
Method	X-RAY DIFFRACTION 1.68 Å
Organisms	Methanothermobacter marburgensis str. Marburg
Macromolecule	Aquaporin aqpM (protein)
Unique Ligands	GOL

Explore in 3D

3M1V \| pdb_00003m1v	Download File View File

Structural Insight into Methyl-Coenzyme M Reductase Chemistry using Coenzyme B Analogues

Cedervall, P.E., Dey, M., Ragsdale, S.W., Wilmot, C.M.

(2010) Biochemistry 49: 7683-7693

Released	2010-09-15
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Methanothermobacter marburgensis str. Marburg
Macromolecule	Methyl-coenzyme M reductase I subunit alpha (protein) Methyl-coenzyme M reductase I subunit beta (protein) Methyl-coenzyme M reductase I subunit gamma (protein)
Unique Ligands	ACT, COM, EDO, F43, MG, PEG, TP7, ZN

Explore in 3D

3M2R \| pdb_00003m2r	Download File View File

Structural Insight into Methyl-Coenzyme M Reductase Chemistry using Coenzyme B Analogues

Cedervall, P.E., Dey, M., Ragsdale, S.W., Wilmot, C.M.

(2010) Biochemistry 49: 7683-7693

Released	2010-09-15
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Methanothermobacter marburgensis str. Marburg
Macromolecule	Methyl-coenzyme M reductase I subunit alpha (protein) Methyl-coenzyme M reductase I subunit beta (protein) Methyl-coenzyme M reductase I subunit gamma (protein)
Unique Ligands	COM, EDO, F43, MG, PEG, TP7, TPZ, ZN

Explore in 3D

3M2U \| pdb_00003m2u	Download File View File

Structural Insight into Methyl-Coenzyme M Reductase Chemistry using Coenzyme B Analogues

Cedervall, P.E., Dey, M., Ragsdale, S.W., Wilmot, C.M.

(2010) Biochemistry 49: 7683-7693

Released	2010-09-15
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Methanothermobacter marburgensis str. Marburg
Macromolecule	Methyl-coenzyme M reductase I subunit alpha (protein) Methyl-coenzyme M reductase I subunit beta (protein) Methyl-coenzyme M reductase I subunit gamma (protein)
Unique Ligands	ACT, COM, EDO, F43, MG, PEG, TP7, TXZ, ZN

Explore in 3D

3M2V \| pdb_00003m2v	Download File View File

Structural Insight into Methyl-Coenzyme M Reductase Chemistry using Coenzyme B Analogues

Cedervall, P.E., Dey, M., Ragsdale, S.W., Wilmot, C.M.

(2010) Biochemistry 49: 7683-7693

Released	2010-09-15
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Methanothermobacter marburgensis str. Marburg
Macromolecule	Methyl-coenzyme M reductase I subunit alpha (protein) Methyl-coenzyme M reductase I subunit beta (protein) Methyl-coenzyme M reductase I subunit gamma (protein)
Unique Ligands	ACT, COM, EDO, F43, MG, TP7, XP8, ZN

Explore in 3D

3M30 \| pdb_00003m30	Download File View File

Structural Insight into Methyl-Coenzyme M Reductase Chemistry using Coenzyme B Analogues

Cedervall, P.E., Dey, M., Ragsdale, S.W., Wilmot, C.M.

(2010) Biochemistry 49: 7683-7693

Released	2010-09-15
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Methanothermobacter marburgensis str. Marburg
Macromolecule	Methyl-coenzyme M reductase I subunit alpha (protein) Methyl-coenzyme M reductase I subunit beta (protein) Methyl-coenzyme M reductase I subunit gamma (protein)
Unique Ligands	ACT, COM, EDO, F43, MG, PEG, TP7, XP9, ZN

Explore in 3D

3M32 \| pdb_00003m32	Download File View File

Structural Insight into Methyl-Coenzyme M Reductase Chemistry using Coenzyme B Analogues

Cedervall, P.E., Dey, M., Ragsdale, S.W., Wilmot, C.M.

(2010) Biochemistry 49: 7683-7693

Released	2010-09-15
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Methanothermobacter marburgensis str. Marburg
Macromolecule	Methyl-coenzyme M reductase I subunit alpha (protein) Methyl-coenzyme M reductase I subunit beta (protein) Methyl-coenzyme M reductase I subunit gamma (protein)
Unique Ligands	ACT, COM, EDO, F43, MG, PEG, SHT, TP7, ZN

Explore in 3D

3POT \| pdb_00003pot	Download File View File

Structural analysis of a Ni(III)-methyl species in methyl-coenzyme M reductase from Methanothermobacter marburgensis

Cedervall, P.E., Wilmot, C.M.

(2011) J Am Chem Soc 133: 5626-5628

Released	2011-04-13
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Methanothermobacter marburgensis
Macromolecule	Methyl-coenzyme M reductase I subunit alpha (protein) Methyl-coenzyme M reductase I subunit beta (protein) Methyl-coenzyme M reductase I subunit gamma (protein)
Unique Ligands	06C, COM, EDO, F43, K, MG, TP7, TXZ

Explore in 3D

3WV7 \| pdb_00003wv7	Download File View File

HcgE from Methanothermobacter marburgensis

Fujishiro, T., Ermler, U., Shima, S.

(2015) Nat Commun 6: 6895-6895

Released	2015-04-29
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Methanothermobacter marburgensis str. Marburg
Macromolecule	Hmd co-occurring protein HcgE (protein)
Unique Ligands	ADP

Explore in 3D

3WV8 \| pdb_00003wv8	Download File View File

ATP-bound HcgE from Methanothermobacter marburgensis

Fujishiro, T., Ermler, U., Shima, S.

(2015) Nat Commun 6: 6895-6895

Released	2015-04-29
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Methanothermobacter marburgensis str. Marburg
Macromolecule	Hmd co-occurring protein HcgE (protein)
Unique Ligands	ATP, SO4

Explore in 3D

3WV9 \| pdb_00003wv9	Download File View File

Guanylylpyridinol (GP)- and ATP-bound HcgE from Methanothermobacter marburgensis

Fujishiro, T., Ermler, U., Shima, S.

(2015) Nat Commun 6: 6895-6895

Released	2015-04-29
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Methanothermobacter marburgensis str. Marburg
Macromolecule	Hmd co-occurring protein HcgE (protein)
Unique Ligands	ATP, FEG, SO4

Explore in 3D

3ZFS \| pdb_00003zfs	Download File View File

Cryo-EM structure of the F420-reducing NiFe-hydrogenase from a methanogenic archaeon with bound substrate

Mills, D.J., Vitt, S., Strauss, M., Shima, S., Vonck, J.

(2013) Elife 2: 218

Released	2013-03-06
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Methanothermobacter marburgensis
Macromolecule	F420-REDUCING HYDROGENASE, SUBUNIT ALPHA (protein) F420-REDUCING HYDROGENASE, SUBUNIT BETA (protein) F420-REDUCING HYDROGENASE, SUBUNIT GAMMA (protein)
Unique Ligands	F42, FAD, FCO, FE2, NI, SF4

Explore in 3D

4CI0 \| pdb_00004ci0	Download File View File

Electron cryo-microscopy of F420-reducing NiFe hydrogenase Frh

Allegretti, M., Mills, D.J., McMullan, G., Kuehlbrandt, W., Vonck, J.

(2014) Elife 3: 01963

Released	2014-02-26
Method	ELECTRON MICROSCOPY 3.36 Å
Organisms	Methanothermobacter marburgensis
Macromolecule	F420-REDUCING HYDROGENASE, SUBUNIT ALPHA (protein) F420-REDUCING HYDROGENASE, SUBUNIT BETA (protein) F420-REDUCING HYDROGENASE, SUBUNIT GAMMA (protein)
Unique Ligands	FAD, FE, FE2, NI, SF4, ZN

Explore in 3D

4JJF \| pdb_00004jjf	Download File View File

Crystal structure of FE-hydrogenase from methanothermobacter marburgensis in complex with 2-naphthylisocyanide

Tamura, H., Warkentin, E., Ermler, U., Shima, S.

(2013) Angew Chem Int Ed Engl 52: 9656-9659

Released	2013-08-07
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Methanothermobacter marburgensis str. Marburg
Macromolecule	5,10-methenyltetrahydromethanopterin hydrogenase (protein)
Unique Ligands	FE9, N2I

Explore in 3D

4JJG \| pdb_00004jjg	Download File View File

Crystal structure of FE-hydrogenase from methanothermobacter marburgensis in complex with toluenesulfonylmethylisocyanide

Tamura, H., Warkentin, E., Ermler, U., Shima, S.

(2013) Angew Chem Int Ed Engl 52: 9656-9659

Released	2013-08-07
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Methanothermobacter marburgensis str. Marburg
Macromolecule	5,10-methenyltetrahydromethanopterin hydrogenase (protein)
Unique Ligands	FE9, IC9

Explore in 3D

4OMF \| pdb_00004omf	Download File View File

The F420-reducing [NiFe]-hydrogenase complex from Methanothermobacter marburgensis, the first X-ray structure of a group 3 family member

Vitt, S., Ma, K., Warkentin, E., Moll, J., Pierik, A., Shima, S., Ermler, U.

(2014) J Mol Biology 426: 2813-2826

Released	2014-06-11
Method	X-RAY DIFFRACTION 1.71 Å
Organisms	Methanothermobacter marburgensis str. Marburg
Macromolecule	F420-reducing hydrogenase, subunit alpha (protein) F420-reducing hydrogenase, subunit beta (protein) F420-reducing hydrogenase, subunit gamma (protein)
Unique Ligands	CL, DTZ, FAD, KEN, MG, NFU, SF4, UNL

Explore in 3D

4R81 \| pdb_00004r81	Download File View File

NAD(P)H:quinone oxidoreductase from Methanothermobacter marburgensis

Ullmann, E., Tan, T.C., Herwig, C., Divne, C., Spadiut, O.

(2014) Biosci Rep 34: e00167-e00167

Released	2014-11-19
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Methanothermobacter marburgensis str. Marburg
Macromolecule	NADH dehydrogenase (protein)
Unique Ligands	FMN

Explore in 3D

5A0Y \| pdb_00005a0y	Download File View File

METHYL-COENZYME M REDUCTASE FROM METHANOTHERMOBACTER MARBURGENSIS AT 1.1 A RESOLUTION

Wagner, T., Ermler, U.

(2016) Angew Chem Int Ed Engl 55: 10630

Released	2016-05-11
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Methanothermobacter marburgensis
Macromolecule	METHYL-COENZYME M REDUCTASE I SUBUNIT ALPHA (protein) METHYL-COENZYME M REDUCTASE I SUBUNIT BETA (protein) METHYL-COENZYME M REDUCTASE I SUBUNIT GAMMA (protein)
Unique Ligands	CL, COM, F43, K, MG, NA, TP7

Explore in 3D

5A8R \| pdb_00005a8r	Download File View File

METHYL-COENZYME M REDUCTASE II FROM METHANOTHERMOBACTER MARBURGENSIS AT 2.15 A RESOLUTION

Wagner, T., Ermler, U.

(2016) Angew Chem Int Ed Engl 55: 10630

Released	2016-08-10
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Methanothermobacter marburgensis
Macromolecule	METHYL-COENZYME M REDUCTASE II SUBUNIT ALPHA (protein) METHYL-COENZYME M REDUCTASE II SUBUNIT GAMMA (protein) METHYL-COENZYME M REDUCTASE II, SUBUNIT BETA (protein)
Unique Ligands	COM, F43, K, TP7

Explore in 3D

5G0R \| pdb_00005g0r	Download File View File

METHYL-COENZYME M REDUCTASE I FROM METHANOTHERMOBACTER MARBURGENSIS EXPOSED TO 3-NITROOXYPROPANOL

Wagner, T.

(2016) Proc Natl Acad Sci U S A 113: 6172

Released	2016-04-13
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Methanothermobacter marburgensis
Macromolecule	METHYL-COENZYME M REDUCTASE I SUBUNIT ALPHA (protein) METHYL-COENZYME M REDUCTASE I SUBUNIT BETA (protein) METHYL-COENZYME M REDUCTASE I SUBUNIT GAMMA (protein)
Unique Ligands	CL, F43, K, MG, NA, TP7

Explore in 3D

5OK4 \| pdb_00005ok4	Download File View File

Crystal structure of native [Fe]-hydrogenase Hmd from Methanothermobacter marburgensis inactivated by O2.

Wagner, T., Huang, G., Bill, E., Ermler, U., Ataka, K., Shima, S.

(2018) Angew Chem Int Ed Engl 57: 4917-4920

Released	2018-05-16
Method	X-RAY DIFFRACTION 1.29 Å
Organisms	Methanothermobacter marburgensis str. Marburg
Macromolecule	5,10-methenyltetrahydromethanopterin hydrogenase (protein)
Unique Ligands	FE, FEG, GOL

1 to 25 of 34 Structures

Page 1 of 2

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1HBU | pdb_00001hbu

1MRO | pdb_00001mro

1TR8 | pdb_00001tr8

2EVU | pdb_00002evu

2F2B | pdb_00002f2b

3M1V | pdb_00003m1v

3M2R | pdb_00003m2r

3M2U | pdb_00003m2u

3M2V | pdb_00003m2v

3M30 | pdb_00003m30

3M32 | pdb_00003m32

3POT | pdb_00003pot

3WV7 | pdb_00003wv7

3WV8 | pdb_00003wv8

3WV9 | pdb_00003wv9

3ZFS | pdb_00003zfs

4CI0 | pdb_00004ci0

4JJF | pdb_00004jjf

4JJG | pdb_00004jjg

4OMF | pdb_00004omf

4R81 | pdb_00004r81

5A0Y | pdb_00005a0y

5A8R | pdb_00005a8r

5G0R | pdb_00005g0r

5OK4 | pdb_00005ok4