RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

234,440 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Source Organism Taxonomy Name (Full Lineage) = "Anas platyrhynchos"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 40 Structures.

Refinements

Structure Determination Methodology

experimental (40)

Scientific Name of Source Organism

	Anas platyrhynchos (40)
	unidentified influenza virus (8)
	Mus musculus (2)
	synthetic construct (2)
	Chikungunya virus (1)
	Duck Tembusu virus (1)
	Western equine encephalitis virus (1)

Taxonomy

	Eukaryota (40)
	Riboviria (11)
	other sequences (2)

Experimental Method

	X-RAY DIFFRACTION (37)
	ELECTRON MICROSCOPY (2)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (40)
	RNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (5)
	1.5 - 2.0 (9)
	2.0 - 2.5 (15)
	2.5 - 3.0 (2)
	3.0 - 3.5 (2)
	3.5 - 4.0 (4)
	4.0 - 4.5 (2)

Release Date

	1995 - 1999 (4)
	2000 - 2004 (10)
	2005 - 2009 (1)
	2010 - 2014 (6)
	2015 - 2019 (9)
	2020 - 2024 (10)

Enzyme Classification Name

	Hydrolases (14)
	Lyases (10)
	Transferases (1)

Membrane Protein Annotation

	MemProtMD (2)
	PDBTM (2)
	OPM (1)

Symmetry Type

	Asymmetric (28)
	Dihedral (10)
	Cyclic (2)

SCOP Classification

	All alpha proteins (12)
	All beta proteins (3)
	Alpha and beta proteins (a+b) (7)
	Alpha and beta proteins (a/b) (6)
	Artifacts (1)

AllSelected

1 to 25 of 40 Structures

Page 1 of 2

Sort by

Explore in 3D

1AOV \| pdb_00001aov	Download File View File

APO DUCK OVOTRANSFERRIN

Rawas, A., Muirhead, H.

(1989) J Mol Biology 208: 213-214

Released	1997-06-16
Method	X-RAY DIFFRACTION 4 Å
Organisms	Anas platyrhynchos
Macromolecule	APO-OVOTRANSFERRIN (protein)

Explore in 3D

1AUW \| pdb_00001auw	Download File View File

H91N DELTA 2 CRYSTALLIN FROM DUCK

Abu-Abed, M., Vallee, F., Howell, P.L.

(1997) Biochemistry 36: 14012-14022

Released	1998-03-18
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Anas platyrhynchos
Macromolecule	DELTA 2 CRYSTALLIN (protein)

Explore in 3D

1DCN \| pdb_00001dcn	Download File View File

INACTIVE MUTANT H162N OF DELTA 2 CRYSTALLIN WITH BOUND ARGININOSUCCINATE

Vallee, F., Turner, M.A., Lindley, P., Howell, P.L.

(1999) Biochemistry 38: 2425-2434

Released	1999-04-27
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Anas platyrhynchos
Macromolecule	DELTA 2 CRYSTALLIN (protein)
Unique Ligands	AS1

Explore in 3D

1DOT \| pdb_00001dot	Download File View File

CRYSTALLOGRAPHIC STRUCTURE OF DUCK OVOTRANSFERRIN AT 2.3 ANGSTROMS RESOLUTION

Rawas, A., Muirhead, H.

(1996) Acta Crystallogr D Biol Crystallogr 52: 631-640

Released	1996-03-08
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Anas platyrhynchos
Macromolecule	DUCK OVOTRANSFERRIN (protein)
Unique Ligands	CO3, FE, FUC, NAG

Explore in 3D

1GV8 \| pdb_00001gv8	Download File View File

18 kDa fragment of N-II domain of duck ovotransferrin

Kuser, P., Hall, D.R., Haw, M.L., Neu, M., Lindley, P.F.

(2002) Acta Crystallogr D Biol Crystallogr 58: 777

Released	2002-02-12
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Anas platyrhynchos
Macromolecule	OVOTRANSFERRIN (protein)
Unique Ligands	CO3, FE, GLY

Explore in 3D

1GVC \| pdb_00001gvc	Download File View File

18kDa N-II domain fragment of duck ovotransferrin + NTA

Kuser, P., Hall, D.R., Haw, M.L., Neu, M., Lindley, P.F.

(2002) Acta Crystallogr D Biol Crystallogr 58: 777

Released	2002-02-12
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Anas platyrhynchos
Macromolecule	OVOTRANSFERRIN (protein)
Unique Ligands	CO3, FE, NTA

Explore in 3D

1HY0 \| pdb_00001hy0	Download File View File

CRYSTAL STRUCTURE OF WILD TYPE DUCK DELTA 1 CRYSTALLIN (EYE LENS PROTEIN)

Sampaleanu, L.M., Vallee, F., Slingsby, C., Howell, P.L.

(2001) Biochemistry 40: 2732-2742

Released	2001-04-21
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Anas platyrhynchos
Macromolecule	DELTA CRYSTALLIN I (protein)
Unique Ligands	SO4

Explore in 3D

1HY1 \| pdb_00001hy1	Download File View File

CRYSTAL STRUCTURE OF WILD TYPE DUCK DELTA 2 CRYSTALLIN (EYE LENS PROTEIN)

Sampaleanu, L.M., Vallee, F., Slingsby, C., Howell, P.L.

(2001) Biochemistry 40: 2732-2742

Released	2001-04-21
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Anas platyrhynchos
Macromolecule	DELTA CRYSTALLIN II (protein)

Explore in 3D

1K7W \| pdb_00001k7w	Download File View File

Crystal Structure of S283A Duck Delta 2 Crystallin Mutant

Sampaleanu, L.M., Yu, B., Howell, P.L.

(2002) J Biological Chem 277: 4166-4175

Released	2002-03-06
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Anas platyrhynchos
Macromolecule	delta 2 crystallin (protein)
Unique Ligands	AS1

Explore in 3D

1TJU \| pdb_00001tju	Download File View File

Crystal Structure of T161S Duck Delta 2 Crystallin Mutant

Sampaleanu, L.M., Codding, P.W., Lobsanov, Y.D., Tsai, M., Smith, G.D., Horvatin, C., Howell, P.L.

(2004) Biochem J 384: 437-447

Released	2004-09-07
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Anas platyrhynchos
Macromolecule	Delta crystallin II (protein)

Explore in 3D

1TJV \| pdb_00001tjv	Download File View File

Crystal Structure of T161D Duck Delta 2 Crystallin Mutant

Sampaleanu, L.M., Codding, P.W., Lobsanov, Y.D., Tsai, M., Smith, G.D., Horvatin, C., Howell, P.L.

(2004) Biochem J 384: 437-447

Released	2004-09-07
Method	X-RAY DIFFRACTION 2 Å
Organisms	Anas platyrhynchos
Macromolecule	Delta crystallin II (protein)

Explore in 3D

1TJW \| pdb_00001tjw	Download File View File

Crystal Structure of T161D Duck Delta 2 Crystallin Mutant with bound argininosuccinate

Sampaleanu, L.M., Codding, P.W., Lobsanov, Y.D., Tsai, M., Smith, G.D., Horvatin, C., Howell, P.L.

(2004) Biochem J 384: 437-447

Released	2004-09-07
Method	X-RAY DIFFRACTION 2 Å
Organisms	Anas platyrhynchos
Macromolecule	Delta crystallin II (protein)
Unique Ligands	AS1

Explore in 3D

1U15 \| pdb_00001u15	Download File View File

Crystal structure of a duck-delta-crystallin-1 double loop mutant (DLM)

Tsai, M., Sampaleanu, L.M., Greene, C., Creagh, L., Haynes, C., Howell, P.L.

(2004) Biochemistry 43: 11672-11682

Released	2004-10-05
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Anas platyrhynchos
Macromolecule	Delta crystallin I (protein)

Explore in 3D

1U16 \| pdb_00001u16	Download File View File

Crystal structure of a duck-delta-crystallin-1 double loop mutant (DLM) in complex with sulfate

Tsai, M., Sampaleanu, L.M., Greene, C., Creagh, L., Haynes, C., Howell, P.L.

(2004) Biochemistry 43: 11672-11682

Released	2004-10-05
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Anas platyrhynchos
Macromolecule	Delta crystallin I (protein)
Unique Ligands	CL, MES, SO4

Explore in 3D

3EOK \| pdb_00003eok	Download File View File

Crystal structure determination of duck (Anas platyrhynchos) hemoglobin at 2.1 Angstrom resolution

Sathya Moorthy, Pon., Neelagandan, K., Balasubramanian, M., Ponnuswamy, M.N.

To be published

Released	2009-10-06
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Anas platyrhynchos
Macromolecule	Hemoglobin subunit alpha-A (protein) Hemoglobin subunit beta (protein)
Unique Ligands	HEM

Explore in 3D

4A2P \| pdb_00004a2p	Download File View File

Structure of duck RIG-I helicase domain

Kowalinski, E., Lunardi, T., McCarthy, A.A., Cusack, S.

(2011) Cell 147: 423

Released	2011-10-19
Method	X-RAY DIFFRACTION 3 Å
Organisms	Anas platyrhynchos
Macromolecule	RETINOIC ACID INDUCIBLE PROTEIN I (protein)

Explore in 3D

4A2Q \| pdb_00004a2q	Download File View File

Structure of duck RIG-I tandem CARDs and helicase domain

Kowalinski, E., Lunardi, T., McCarthy, A.A., Cusack, S.

(2011) Cell 147: 423

Released	2011-10-19
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Anas platyrhynchos
Macromolecule	RETINOIC ACID INDUCIBLE PROTEIN I (protein)

Explore in 3D

4A2V \| pdb_00004a2v	Download File View File

Structure of duck RIG-I C-terminal domain (CTD)

Kowalinski, E., Lunardi, T., McCarthy, A.A., Cusack, S.

(2011) Cell 147: 423

Released	2011-10-19
Method	X-RAY DIFFRACTION 1.44 Å
Organisms	Anas platyrhynchos
Macromolecule	RETINOIC ACID INDUCIBLE PROTEIN I (protein)
Unique Ligands	GOL, ZN

Explore in 3D

4A2W \| pdb_00004a2w	Download File View File

Structure of full-length duck RIG-I

Kowalinski, E., Lunardi, T., McCarthy, A.A., Cusack, S.

(2011) Cell 147: 423

Released	2011-10-19
Method	X-RAY DIFFRACTION 3.7 Å
Organisms	Anas platyrhynchos
Macromolecule	RETINOIC ACID INDUCIBLE PROTEIN I (protein)

Explore in 3D

4A2X \| pdb_00004a2x	Download File View File

Structure of duck RIG-I C-terminal domain (CTD) with 14-mer dSRNA

Kowalinski, E., Lunardi, T., McCarthy, A.A., Cusack, S.

(2011) Cell 147: 423-435

Released	2011-10-19
Method	X-RAY DIFFRACTION 4 Å
Organisms	Anas platyrhynchos synthetic construct
Macromolecule	RETINOIC ACID INDUCIBLE PROTEIN I (protein) 5'-R(CPGPCPGPUPUPGPUPUPCPUPCPCPCP)-3' (nucleic acid) 5'-R(GPGPGPAPGPAPAPCPAPAPCPGPCPGP)-3' (nucleic acid)
Unique Ligands	ZN

Explore in 3D

4A36 \| pdb_00004a36	Download File View File

Structure of duck RIG-I helicase domain bound to 19-mer dsRNA and ATP transition state analogue

Kowalinski, E., Lunardi, T., McCarthy, A.A., Cusack, S.

(2011) Cell 147: 423

Released	2011-10-19
Method	X-RAY DIFFRACTION 3.7 Å
Organisms	Anas platyrhynchos synthetic construct
Macromolecule	RETINOIC ACID INDUCIBLE PROTEIN I (protein) 5'-R(GPCPAPUPGPCPGPAPCPCPUPCPUPGP UPUPUPGPA)-3' (nucleic acid) 5'-R(UPCPAPAPAPCPAPGPAPGPGPUPCPGP CPAPUPGPC)-3' (nucleic acid)
Unique Ligands	ADP, AF3, MG

Explore in 3D

5GJX \| pdb_00005gjx	Download File View File

Crystal structure of DUCK MHC I for 2.06 angstrom

Wu, Y., Xia, C.

To be published

Released	2017-05-10
Method	X-RAY DIFFRACTION 2.06 Å
Organisms	Anas platyrhynchos unidentified influenza virus
Macromolecule	ARG-LEU-ILE-GLN-ASN-SER-ILE-THR-ILE (protein) Beta-2-microglobulin (protein) MHC class I antigen (protein)

Explore in 3D

5GJY \| pdb_00005gjy	Download File View File

Crystal structure of DUCK MHC CLASS I for 1.71 angstrom

Wu, Y., Xia, C.

To be published

Released	2017-05-10
Method	X-RAY DIFFRACTION 1.71 Å
Organisms	Anas platyrhynchos unidentified influenza virus
Macromolecule	Beta-2-microglobulin (protein) MET-VAL-MET-GLU-LEU-ILE-ARG-MET-ILE (protein) MHC class I antigen (protein)