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234,785 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy ID (Full Lineage) = "9913"

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Search Summary

This query matches 73 Polymer Entities.

Refinements

Structure Determination Methodology

experimental (73)

Scientific Name of Source Organism

	Homo sapiens (45)
	synthetic construct (9)
	Streptococcus pneumoniae (6)
	Mus musculus (5)
	Haemophilus influenzae Rd KW20 (3)
	Zea mays (3)
	Leishmania infantum (2)
	Oryza sativa (2)
	Agrobacterium tumefaciens (1)
	Bacillus anthracis (1)

More...

Taxonomy

	Eukaryota (60)
	Bacteria (13)
	other sequences (9)
	Varidnaviria (1)

Experimental Method

X-RAY DIFFRACTION (73)

Polymer Entity Type

	Protein (73)
	DNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (23)
	2.0 - 2.5 (45)
	2.5 - 3.0 (3)

Release Date

	2005 - 2009 (1)
	2010 - 2014 (13)
	2015 - 2019 (48)
	2020 - 2024 (11)

Enzyme Classification Name

	Transferases (47)
	Hydrolases (3)
	Isomerases (1)

Symmetry Type

	Asymmetric (66)
	Cyclic (9)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (39)
	Artifacts (16)
	Alpha and beta proteins (a/b) (8)
	All alpha proteins (3)

AllSelected

1 to 25 of 73 Polymer Entities

Page 1 of 3

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3HA1 \| pdb_00003ha1	Download File View File

Alanine racemase from Bacillus Anthracis (Ames)

Counago, R.M., Davlieva, M., Strych, U., Hill, R.E., Krause, K.L.

(2009) BMC Struct Biol 9: 53-53

Released	2009-09-15
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Bacillus anthracis
Macromolecule	Alanine racemase (protein)
Unique Ligands	ACT, CL

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3ZIN \| pdb_00003zin	Download File View File

Gu_alpha_helicase

Chang, C.-W., Counago, R.M., Williams, S.J., Kobe, B.

(2013) Traffic 14: 1144

Released	2013-08-21
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mus musculus
Macromolecule	IMPORTIN SUBUNIT ALPHA-2 (protein) NUCLEOLAR RNA HELICASE 2 (protein)

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3ZIO \| pdb_00003zio	Download File View File

minor-site specific NLS (A28)

Chang, C.-W., Counago, R.M., Williams, S.J., Kobe, B.

(2013) Traffic 14: 1144

Released	2013-08-21
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mus musculus synthetic construct
Macromolecule	A28NLS (protein) IMPORTIN SUBUNIT ALPHA-2 (protein)

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3ZIP \| pdb_00003zip	Download File View File

minor-site specific NLS (A58)

Chang, C.-W., Counago, R.M., Williams, S.J., Kobe, B.

(2013) Traffic 14: 1144

Released	2013-08-21
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mus musculus synthetic construct
Macromolecule	A58NLS (protein) IMPORTIN SUBUNIT ALPHA-2 (protein)

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3ZIQ \| pdb_00003ziq	Download File View File

minor-site specific NLS (B6)

Chang, C.-W., Counago, R.M., Williams, S.J., Kobe, B.

(2013) Traffic 14: 1144

Released	2013-08-21
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mus musculus synthetic construct
Macromolecule	B6NLS (protein) IMPORTIN SUBUNIT ALPHA-2 (protein)

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3ZIR \| pdb_00003zir	Download File View File

minor-site specific NLS (B141)

Chang, C.-W., Counago, R.M., Williams, S.J., Kobe, B.

(2013) Traffic 14: 1144

Released	2013-08-21
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Mus musculus synthetic construct
Macromolecule	B141NLS (protein) IMPORTIN SUBUNIT ALPHA-2 (protein)

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3ZK7 \| pdb_00003zk7	Download File View File

CRYSTAL STRUCTURE OF PNEUMOCOCCAL SURFACE ANTIGEN PSAA IN THE METAL-FREE, OPEN STATE

Counago, R.M., Ween, M.P., Bajaj, M., Zuegg, J., Cooper, M.A., McEwan, A.G., Paton, J.C., Kobe, B., McDevitt, C.A.

(2014) Nat Chem Biol 10: 35-41

Released	2013-11-06
Method	X-RAY DIFFRACTION 1.69 Å
Organisms	Streptococcus pneumoniae
Macromolecule	MANGANESE ABC TRANSPORTER SUBSTRATE-BINDING LIPOPROTEIN (protein)
Unique Ligands	TRS

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3ZK8 \| pdb_00003zk8	Download File View File

CRYSTAL STRUCTURE OF PNEUMOCOCCAL SURFACE ANTIGEN PSAA E205Q IN THE METAL-FREE, OPEN STATE

Counago, R.M., Ween, M.P., Bajaj, M., Zuegg, J., Cooper, M.A., McEwan, A.G., Paton, J.C., Kobe, B., McDevitt, C.A.

(2014) Nat Chem Biol 10: 35-41

Released	2013-11-06
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Streptococcus pneumoniae
Macromolecule	MANGANESE ABC TRANSPORTER SUBSTRATE-BINDING LIPOPROTEIN (protein)
Unique Ligands	TRS

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3ZK9 \| pdb_00003zk9	Download File View File

CRYSTAL STRUCTURE OF PNEUMOCOCCAL SURFACE ANTIGEN PSAA D280N IN THE METAL-FREE, OPEN STATE

Counago, R.M., Ween, M.P., Bajaj, M., Zuegg, J., Cooper, M.A., McEwan, A.G., Paton, J.C., Kobe, B., McDevitt, C.A.

(2014) Nat Chem Biol 10: 35-41

Released	2013-11-06
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Streptococcus pneumoniae
Macromolecule	MANGANESE ABC TRANSPORTER SUBSTRATE-BINDING LIPOPROTEIN (protein)
Unique Ligands	TRS

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3ZKA \| pdb_00003zka	Download File View File

CRYSTAL STRUCTURE OF PNEUMOCOCCAL SURFACE ANTIGEN PSAA D280N IN THE METAL-BOUND, OPEN STATE

Counago, R.M., Ween, M.P., Bajaj, M., Zuegg, J., Cooper, M.A., McEwan, A.G., Paton, J.C., Kobe, B., McDevitt, C.A.

(2014) Nat Chem Biol 10: 35-41

Released	2013-11-06
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Streptococcus pneumoniae
Macromolecule	MANGANESE ABC TRANSPORTER SUBSTRATE-BINDING LIPOPROTEIN (protein)
Unique Ligands	MN, TRS

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4B6G \| pdb_00004b6g	Download File View File

The Crystal Structure of the Neisserial Esterase D.

Counago, R.M., Kobe, B.

(2013) Antioxid Redox Signal 18: 743-755

Released	2012-11-14
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Neisseria meningitidis MC58
Macromolecule	PUTATIVE ESTERASE (protein)

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4BPL \| pdb_00004bpl	Download File View File

rice importin_alpha in complex with nucleoplasmin NLS

Chang, C.-W., Counago, R.M., Williams, S.J., Kobe, B.

(2014) Mol Plant 7: 1061

Released	2014-02-19
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Oryza sativa Xenopus
Macromolecule	IMPORTIN SUBUNIT ALPHA-1A (protein) NUCLEOPLASMIN NLS (protein)

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4BQK \| pdb_00004bqk	Download File View File

rice importin_alpha : VirD2NLS complex

Chang, C.-W., Counago, R.M., Williams, S.J., Kobe, B.

(2014) Mol Plant 7: 1061

Released	2014-02-19
Method	X-RAY DIFFRACTION 1.997 Å
Organisms	Agrobacterium tumefaciens Oryza sativa
Macromolecule	IMPORTIN SUBUNIT ALPHA-1A (protein) T-DNA BORDER ENDONUCLEASE VIRD2 (protein)
Unique Ligands	PEG

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4P5I \| pdb_00004p5i	Download File View File

Crystal structure of the chemokine binding protein from orf virus

Counago, R.M., Krause, K.L.

(2015) Structure 23: 1199-1213

Released	2015-07-15
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Orf virus
Macromolecule	Chemokine binding protein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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4UTO \| pdb_00004uto	Download File View File

Crystal structure of pneumococcal surface antigen PsaA D280N in the Cd-bound, open state

Luo, Z., Counago, R.M., Maher, M., Kobe, B.

(2015) Nat Commun 6: 6418-6418

Released	2015-03-11
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Streptococcus pneumoniae
Macromolecule	MANGANESE ABC TRANSPORTER SUBSTRATE-BINDING LIPOPROTEIN (protein)
Unique Ligands	CD, TRS

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4UTP \| pdb_00004utp	Download File View File

Crystal structure of pneumococcal surface antigen PsaA in the Cd- bound, closed state

Luo, Z., Counago, R.M., Maher, M., Kobe, B.

(2015) Nat Commun 6: 6418-6418

Released	2014-08-13
Method	X-RAY DIFFRACTION 2 Å
Organisms	Streptococcus pneumoniae
Macromolecule	MANGANESE ABC TRANSPORTER SUBSTRATE-BINDING LIPOPROTEIN (protein)
Unique Ligands	CD

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5D8C \| pdb_00005d8c	Download File View File

Crystal structure of HiNmlR, a MerR family regulator lacking the sensor domain, bound to promoter DNA

Counago, R.M., Chang, C.W., Chen, N.H., Djoko, K.Y., McEwan, A.G., Kobe, B.

(2016) Nucleic Acids Res 44: 6981-6993

Released	2016-06-29
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Haemophilus influenzae Rd KW20
Macromolecule	MerR family regulator protein (protein) DNA (5'-D(CPTPTPAPGPAPGPTPGPAPAPCPTPCPTPAPAPG)-3') (nucleic acid) DNA (5'-D(CPTPTPAPGPAPGPTPTPCPAPCPTPCPTPAPAPG)-3') (nucleic acid)

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5D90 \| pdb_00005d90	Download File View File

Crystal structure of HiNmlR, a MerR family regulator lacking the sensor domain, bound to promoter DNA

Counago, R.M., Chang, C.W., Kobe, B.

(2016) Nucleic Acids Res 44: 6981-6993

Released	2016-06-29
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Haemophilus influenzae Rd KW20
Macromolecule	MerR family regulator protein (protein)

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5E01 \| pdb_00005e01	Download File View File

Crystal structure of HiNmlR, a MerR family regulator lacking the sensor domain, bound to palyndromic promoter DNA

Counago, R.M., Chang, C.W., Chen, N.H., Djoko, K.Y., McEwan, A.G., Kobe, B.

(2016) Nucleic Acids Res 44: 6981-6993

Released	2016-06-29
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Haemophilus influenzae Rd KW20
Macromolecule	Uncharacterized HTH-type transcriptional regulator HI_0186 (protein) 5'-D(CPTPTPAPGPAPGPTPGPCPAPCPTPCPTPAPAPG)-3' (nucleic acid)

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5I3O \| pdb_00005i3o	Download File View File

Crystal Structure of BMP-2-inducible kinase in complex with an Indazole inhibitor

Counago, R.M., Sorrell, F.J., Krojer, T., Savitsky, P., Elkins, J.M., Axtman, A., Drewry, D., Wells, C., Zhang, C., Zuercher, W., Willson, T.M., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Arruda, P., Gileadi, O., Structural Genomics Consortium (SGC)

To be published

Released	2016-03-09
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	BMP-2-inducible protein kinase (protein)
Unique Ligands	IDV, SO4

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5I3R \| pdb_00005i3r	Download File View File

Crystal Structure of BMP-2-inducible kinase in complex with an Indazole inhibitor

To be published

Released	2016-03-09
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	BMP-2-inducible protein kinase (protein)
Unique Ligands	IDK, PO4

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5IKW \| pdb_00005ikw	Download File View File

Crystal Structure of BMP-2-inducible kinase in complex with an Indazole inhibitor

To be published

Released	2016-06-29
Method	X-RAY DIFFRACTION 2.41 Å
Organisms	Homo sapiens
Macromolecule	BMP-2-inducible protein kinase (protein)
Unique Ligands	6BU

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5TE0 \| pdb_00005te0	Download File View File

Crystal Structure of Adaptor Protein 2 Associated Kinase (AAK1) in complex with BIBF 1120

Counago, R.M., Elkins, J.M., Bountra, C., Arruda, P., Edwards, A.M., Gileadi, O., Structural Genomics Consortium (SGC)

To be published

Released	2016-11-02
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	AP2-associated protein kinase 1 (protein)
Unique Ligands	GOL, PEG, XIN

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5UKF \| pdb_00005ukf	Download File View File

Crystal Structure of the Human Vaccinia-related Kinase 1 Bound to an Oxindole Inhibitor

Counago, R.M., Wells, C., Zuercher, W., Willson, T.M., Bountra, C., Edwards, A.M., Arruda, P., Gileadi, O., Structural Genomics Consortium (SGC)

(2017) Sci Rep 7: 7501-7501

Released	2017-03-29
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Serine/threonine-protein kinase VRK1 (protein)
Unique Ligands	8E1, CL, PEG, PO4