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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "nqrF"

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Search Summary

This query matches 26 Structures.

Refinements

Structure Determination Methodology

experimental (26)

Scientific Name of Source Organism

	Vibrio cholerae (14)
	Vibrio cholerae O395 (7)
	Klebsiella pneumoniae (2)
	Pseudomonas aeruginosa (2)
	Porphyromonas gingivalis W83 (1)
	synthetic construct (1)

Taxonomy

	Bacteria (26)
	other sequences (1)

Experimental Method

	ELECTRON MICROSCOPY (13)
	X-RAY DIFFRACTION (13)

Polymer Entity Type

Protein (26)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (7)
	2.5 - 3.0 (8)
	3.0 - 3.5 (9)
	3.5 - 4.0 (1)

Release Date

	2005 - 2009 (1)
	2010 - 2014 (1)
	2015 - 2019 (1)
	2020 - 2024 (23)

Enzyme Classification Name

	Translocases (26)
	Oxidoreductases (3)

Membrane Protein Annotation

	PDBTM (16)
	MemProtMD (10)
	OPM (7)
	mpstruc (6)

Symmetry Type

Asymmetric (26)

AllSelected

1 to 25 of 26 Structures

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Explore in 3D

2R6H \| pdb_00002r6h	Download File View File

Crystal structure of the domain comprising the NAD binding and the FAD binding regions of the NADH:ubiquinone oxidoreductase, Na translocating, F subunit from Porphyromonas gingivalis

Kim, Y., Mulligan, R., Moy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2007-09-11
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Porphyromonas gingivalis W83
Macromolecule	NADH:ubiquinone oxidoreductase, Na translocating, F subunit (protein)
Unique Ligands	FAD, SO4

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4U9U \| pdb_00004u9u	Download File View File

Crystal structure of NqrF FAD-binding domain from Vibrio cholerae

Fritz, G.

(2014) Nature 516: 62-67

Released	2014-12-03
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Vibrio cholerae
Macromolecule	Na(+)-translocating NADH-quinone reductase subunit F (protein)
Unique Ligands	ACT, FAD, MG, NA

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4UAJ \| pdb_00004uaj	Download File View File

Crystal structure of NqrF in hexagonal space group

Fritz, G.

(2014) Nature 516: 62-67

Released	2015-08-05
Method	X-RAY DIFFRACTION 2.7019 Å
Organisms	Vibrio cholerae
Macromolecule	Na(+)-translocating NADH-quinone reductase subunit F (protein)
Unique Ligands	FAD, SO4

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7QTY \| pdb_00007qty	Download File View File

X-ray structure of FAD domain of NqrF of Klebsiella pneumoniae

Stegmann, D., Steuber, J., Fritz, G.

(2022) Acta Crystallogr D Struct Biol 78: 328-336

Released	2022-02-09
Method	X-RAY DIFFRACTION 1.69 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Na(+)-translocating NADH-quinone reductase subunit F (protein)
Unique Ligands	DMS, F0R, FAD

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7QU0 \| pdb_00007qu0	Download File View File

X-ray structure of FAD domain of NqrF of Klebsiella pneumoniae

Stegmann, D., Steuber, J., Fritz, G.

(2022) Acta Crystallogr D Struct Biol 78: 328-336

Released	2022-02-09
Method	X-RAY DIFFRACTION 1.62 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Na(+)-translocating NADH-quinone reductase subunit F (protein)
Unique Ligands	DMS, F2L, FAD

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7QU3 \| pdb_00007qu3	Download File View File

X-ray structure of FAD domain of NqrF of Pseudomonas aeruginosa

Stegmann, D., Steuber, J., Fritz, G.

(2022) Acta Crystallogr D Struct Biol 78: 328-336

Released	2022-02-09
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Na(+)-translocating NADH-quinone reductase subunit F (protein)
Unique Ligands	DMS, FAD, MG, RYM

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7QU5 \| pdb_00007qu5	Download File View File

X-ray structure of FAD domain of NqrF of Pseudomonas aeruginosa

Stegmann, D., Steuber, J., Fritz, G.

(2022) Acta Crystallogr D Struct Biol 78: 328-336

Released	2022-02-09
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Na(+)-translocating NADH-quinone reductase subunit F (protein)
Unique Ligands	DMS, FAD, MG, YVR

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7XK3 \| pdb_00007xk3	Download File View File

Cryo-EM structure of Na+-pumping NADH-ubiquinone oxidoreductase from Vibrio cholerae, state 1

Kishikawa, J., Ishikawa, M., Masuya, T., Murai, M., Barquera, B., Miyoshi, H.

(2022) Nat Commun 13: 4082-4082

Released	2022-07-20
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Vibrio cholerae O395
Macromolecule	Unique protein chains: 6
Unique Ligands	CA, FAD, FES, FMN, LMT, PEE, RBF

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7XK4 \| pdb_00007xk4	Download File View File

Cryo-EM structure of Na+-pumping NADH-ubiquinone oxidoreductase from Vibrio cholerae, state 2

Kishikawa, J., Ishikawa, M., Masuya, T., Murai, M., Barquera, B., Miyoshi, H.

(2022) Nat Commun 13: 4082-4082

Released	2022-07-20
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Vibrio cholerae O395
Macromolecule	Unique protein chains: 6
Unique Ligands	CA, FAD, FES, FMN, LMT, PEE, RBF

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7XK5 \| pdb_00007xk5	Download File View File

Cryo-EM structure of Na+-pumping NADH-ubiquinone oxidoreductase from Vibrio cholerae, state 3

Kishikawa, J., Ishikawa, M., Masuya, T., Murai, M., Barquera, B., Miyoshi, H.

(2022) Nat Commun 13: 4082-4082

Released	2022-07-20
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Vibrio cholerae O395
Macromolecule	Unique protein chains: 6
Unique Ligands	CA, FAD, FES, FMN, LMT, PEE, RBF

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7XK6 \| pdb_00007xk6	Download File View File

Cryo-EM structure of Na+-pumping NADH-ubiquinone oxidoreductase from Vibrio cholerae, with aurachin D-42

Kishikawa, J., Ishikawa, M., Masuya, T., Murai, M., Barquera, B., Miyoshi, H.

(2022) Nat Commun 13: 4082-4082

Released	2022-07-20
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Vibrio cholerae O395
Macromolecule	Unique protein chains: 6
Unique Ligands	0NI, CA, FAD, FES, FMN, LMT, PEE, RBF

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7XK7 \| pdb_00007xk7	Download File View File

Cryo-EM structure of Na+-pumping NADH-ubiquinone oxidoreductase from Vibrio cholerae, with korormicin

Kishikawa, J., Ishikawa, M., Masuya, T., Murai, M., Barquera, B., Miyoshi, H.

(2022) Nat Commun 13: 4082-4082

Released	2022-07-20
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Vibrio cholerae O395
Macromolecule	Unique protein chains: 6
Unique Ligands	CA, FAD, FES, FMN, IQT, LMT, PEE, RBF

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8A1T \| pdb_00008a1t	Download File View File

Sodium pumping NADH-quinone oxidoreductase

Hau, J.-L., Kaltwasser, S., Vonck, J., Fritz, G., Steuber, J.

(2023) Nat Struct Mol Biol 30: 1686-1694

Released	2023-06-14
Method	ELECTRON MICROSCOPY 3.37 Å
Organisms	Vibrio cholerae
Macromolecule	Unique protein chains: 6
Unique Ligands	3PE, FAD, FES, FMN, K, LMT, NA, RBF

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8A1U \| pdb_00008a1u	Download File View File

Sodium pumping NADH-quinone oxidoreductase with substrates NADH and Q2

Hau, J.-L., Kaltwasser, S., Vonck, J., Fritz, G., Steuber, J.

(2023) Nat Struct Mol Biol 30: 1686-1694

Released	2023-09-20
Method	ELECTRON MICROSCOPY 2.86 Å
Organisms	Vibrio cholerae
Macromolecule	Unique protein chains: 6
Unique Ligands	3PE, FAD, FES, FMN, LMT, NA, NAI, RBF, UQ2

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8A1V \| pdb_00008a1v	Download File View File

Sodium pumping NADH-quinone oxidoreductase with substrate Q2

Hau, J.-L., Kaltwasser, S., Vonck, J., Fritz, G., Steuber, J.

(2023) Nat Struct Mol Biol 30: 1686-1694

Released	2023-06-14
Method	ELECTRON MICROSCOPY 2.73 Å
Organisms	Vibrio cholerae
Macromolecule	Unique protein chains: 6
Unique Ligands	3PE, FAD, FES, FMN, LMT, NA, RBF, UQ2

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8A1W \| pdb_00008a1w	Download File View File

Sodium pumping NADH-quinone oxidoreductase with substrate Q1

Hau, J.-L., Kaltwasser, S., Vonck, J., Fritz, G., Steuber, J.

(2023) Nat Struct Mol Biol 30: 1686-1694

Released	2023-06-14
Method	ELECTRON MICROSCOPY 2.56 Å
Organisms	Vibrio cholerae
Macromolecule	Unique protein chains: 6
Unique Ligands	3PE, FAD, FES, FMN, LMT, NA, RBF, UQ1

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8A1X \| pdb_00008a1x	Download File View File

Sodium pumping NADH-quinone oxidoreductase with inhibitor DQA

Hau, J.-L., Kaltwasser, S., Vonck, J., Fritz, G., Steuber, J.

(2023) Nat Struct Mol Biol 30: 1686-1694

Released	2023-06-14
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Vibrio cholerae
Macromolecule	Unique protein chains: 6
Unique Ligands	3PE, FAD, FES, FMN, LMT, RBF

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8A1Y \| pdb_00008a1y	Download File View File

Sodium pumping NADH-quinone oxidoreductase with inhibitor HQNO

Hau, J.-L., Kaltwasser, S., Vonck, J., Fritz, G., Steuber, J.

(2023) Nat Struct Mol Biol 30: 1686-1694

Released	2023-06-14
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Vibrio cholerae
Macromolecule	Unique protein chains: 6
Unique Ligands	3PE, FAD, FES, FMN, HQO, LMT, RBF

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8ACW \| pdb_00008acw	Download File View File

X-ray structure of Na+-NQR from Vibrio cholerae at 3.4 A resolution

Fritz, G.

(2023) Nat Struct Mol Biol 30: 1686-1694

Released	2023-07-12
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Vibrio cholerae
Macromolecule	Unique protein chains: 6
Unique Ligands	FAD, FES, FMN, K, LMT, LYS, RBF

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8ACY \| pdb_00008acy	Download File View File

X-ray structure of Na+-NQR from Vibrio cholerae at 3.5 A resolution

Fritz, G.

(2023) Nat Struct Mol Biol 30: 1686-1694

Released	2023-07-12
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Vibrio cholerae
Macromolecule	Unique protein chains: 6
Unique Ligands	FAD, FES, FMN, LMT, NA, RBF

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8AD0 \| pdb_00008ad0	Download File View File

X-ray structure of Na+-NQR from Vibrio cholerae in different conformation at 3.1 A

Fritz, G.

(2023) Nat Struct Mol Biol

Released	2023-07-12
Method	X-RAY DIFFRACTION 3.11 Å
Organisms	Vibrio cholerae
Macromolecule	Unique protein chains: 6
Unique Ligands	3PE, BR, FAD, FES, FMN, K, LMT, NA, RBF

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8AD3 \| pdb_00008ad3	Download File View File

X-ray structure of NqrF(129-408)of Vibrio cholerae variant F406A

Fritz, G.

(2023) Nat Struct Mol Biol 30: 1686-1694

Released	2023-07-12
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Vibrio cholerae
Macromolecule	Na(+)-translocating NADH-quinone reductase subunit F (protein)
Unique Ligands	FAD, MG

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8AD4 \| pdb_00008ad4	Download File View File

X-ray structure of NqrF(129-408)of Vibrio cholerae in complex with NADH

Fritz, G.

(2023) Nat Struct Mol Biol 30: 1686-1694

Released	2023-07-12
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Vibrio cholerae
Macromolecule	Na(+)-translocating NADH-quinone reductase subunit F (protein)
Unique Ligands	FAD, NA, NAI, SO4

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8AD5 \| pdb_00008ad5	Download File View File

X-ray structure of NqrF(129-408)of Vibrio cholerae variant F406A

Fritz, G.

(2023) Nat Struct Mol Biol 30: 1686-1694

Released	2023-07-12
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Vibrio cholerae
Macromolecule	Na(+)-translocating NADH-quinone reductase subunit F (protein)
Unique Ligands	FAD, NA, NAI

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8EVU \| pdb_00008evu	Download File View File

Cryo EM structure of Vibrio cholerae NQR

Fuller, J.R., Juarez, O.

To be published

Released	2022-11-16
Method	ELECTRON MICROSCOPY 2.5804 Å
Organisms	Vibrio cholerae O395 synthetic construct
Macromolecule	Unique protein chains: 6
Unique Ligands	FES, FMN, RBF, UQ1

1 to 25 of 26 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

2R6H | pdb_00002r6h

4U9U | pdb_00004u9u

4UAJ | pdb_00004uaj

7QTY | pdb_00007qty

7QU0 | pdb_00007qu0

7QU3 | pdb_00007qu3

7QU5 | pdb_00007qu5

7XK3 | pdb_00007xk3

7XK4 | pdb_00007xk4

7XK5 | pdb_00007xk5

7XK6 | pdb_00007xk6

7XK7 | pdb_00007xk7

8A1T | pdb_00008a1t

8A1U | pdb_00008a1u

8A1V | pdb_00008a1v

8A1W | pdb_00008a1w

8A1X | pdb_00008a1x

8A1Y | pdb_00008a1y

8ACW | pdb_00008acw

8ACY | pdb_00008acy

8AD0 | pdb_00008ad0

8AD3 | pdb_00008ad3

8AD4 | pdb_00008ad4

8AD5 | pdb_00008ad5

8EVU | pdb_00008evu