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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "aq_053"

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Search Summary

This query matches 33 Structures.

Refinements

Structure Determination Methodology

experimental (33)

Scientific Name of Source Organism

	Escherichia coli K-12 (21)
	Escherichia coli (14)
	synthetic construct (4)
	Escherichia coli O157:H7 (3)
	Photorhabdus heterorhabditis (3)
	Homo sapiens (2)
	Photorhabdus australis (1)

Taxonomy

	Bacteria (33)
	other sequences (4)
	Eukaryota (2)

Experimental Method

	ELECTRON MICROSCOPY (25)
	X-RAY DIFFRACTION (8)

Polymer Entity Type

Protein (33)

Refinement Resolution (Å)

	2.5 - 3.0 (3)
	3.0 - 3.5 (13)
	3.5 - 4.0 (5)
	4.0 - 4.5 (7)
	> 4.5 (5)

Release Date

	2010 - 2014 (1)
	2015 - 2019 (4)
	2020 - 2024 (27)
	2025 - 2029 (1)

Enzyme Classification Name

	Hydrolases (9)
	Isomerases (9)

Membrane Protein Annotation

	PDBTM (32)
	mpstruc (20)
	MemProtMD (18)
	OPM (20)

Symmetry Type

	Asymmetric (33)
	Cyclic (1)
	Dihedral (1)

AllSelected

1 to 25 of 33 Structures

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3TGO \| pdb_00003tgo	Download File View File

Crystal structure of the E. coli BamCD complex

Paetzel, M., Kim, K.H., Aulakh, S.

(2011) J Biological Chem 286: 39116-39121

Released	2011-09-28
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Escherichia coli K-12
Macromolecule	Lipoprotein 34 (protein) UPF0169 lipoprotein yfiO (protein)
Unique Ligands	CL, GOL, K, NA, PO4

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5AYW \| pdb_00005ayw	Download File View File

Structure of a membrane complex

Huang, Y., Han, L., Zheng, J.

(2016) Nat Struct Mol Biol 23: 192-196

Released	2016-02-24
Method	X-RAY DIFFRACTION 3.555 Å
Organisms	Escherichia coli K-12
Macromolecule	Outer membrane protein assembly factor BamA (protein) Outer membrane protein assembly factor BamB (protein) Outer membrane protein assembly factor BamC (protein) Outer membrane protein assembly factor BamD (protein) Outer membrane protein assembly factor BamE (protein)

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5D0O \| pdb_00005d0o	Download File View File

BamABCDE complex, outer membrane beta barrel assembly machinery entire complex

Gu, Y., Paterson, N., Zeng, Y., Dong, H., Wang, W., Dong, C.

(2016) Nature 531: 47-52

Released	2016-03-09
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Escherichia coli
Macromolecule	Outer membrane protein assembly factor BamA (protein) Outer membrane protein assembly factor BamB (protein) Outer membrane protein assembly factor BamC (protein) Outer membrane protein assembly factor BamD (protein) Outer membrane protein assembly factor BamE (protein)

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5D0Q \| pdb_00005d0q	Download File View File

BamACDE complex, outer membrane beta-barrel assembly machinery (BAM) complex

Gu, Y., Paterson, N., Zeng, Y., Dong, H., Wang, W., Dong, C.

(2016) Nature 531: 47-52

Released	2016-03-09
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Escherichia coli
Macromolecule	Outer membrane protein assembly factor BamA (protein) Outer membrane protein assembly factor BamC (protein) Outer membrane protein assembly factor BamD (protein) Outer membrane protein assembly factor BamE (protein)

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5EKQ \| pdb_00005ekq	Download File View File

The structure of the BamACDE subcomplex from E. coli

Bakelar, J., Buchanan, S.K., Noinaj, N.

(2016) Science 351: 180-186

Released	2016-01-20
Method	X-RAY DIFFRACTION 3.392 Å
Organisms	Escherichia coli K-12
Macromolecule	Outer membrane protein assembly factor BamA (protein) Outer membrane protein assembly factor BamC (protein) Outer membrane protein assembly factor BamD (protein) Outer membrane protein assembly factor BamE (protein)

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6LYQ \| pdb_00006lyq	Download File View File

Structure of the BAM complex

Xiao, L., Huang, Y.

(2021) FASEB J 35: e21207-e21207

Released	2021-01-06
Method	X-RAY DIFFRACTION 3.19 Å
Organisms	Escherichia coli K-12
Macromolecule	Unique protein chains: 6

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6LYR \| pdb_00006lyr	Download File View File

Structure of the BAM complex

Xiao, L., Huang, Y.

(2021) FASEB J 35: e21207-e21207

Released	2021-01-06
Method	X-RAY DIFFRACTION 3.28 Å
Organisms	Escherichia coli K-12
Macromolecule	Unique protein chains: 6

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6LYS \| pdb_00006lys	Download File View File

Structure of the BAM complex

Xiao, L., Huang, Y.

(2021) FASEB J 35: e21207-e21207

Released	2021-01-13
Method	X-RAY DIFFRACTION 3.05 Å
Organisms	Escherichia coli K-12
Macromolecule	Outer membrane protein assembly factor BamA (protein) Outer membrane protein assembly factor BamB (protein) Outer membrane protein assembly factor BamC (protein) Outer membrane protein assembly factor BamD (protein) Outer membrane protein assembly factor BamE (protein)

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6LYU \| pdb_00006lyu	Download File View File

Structure of the BAM complex

Xiao, L., Huang, Y.

(2021) FASEB J 35: e21207-e21207

Released	2021-01-13
Method	ELECTRON MICROSCOPY 4.2 Å
Organisms	Escherichia coli K-12
Macromolecule	Outer membrane protein assembly factor BamA (protein) Outer membrane protein assembly factor BamB (protein) Outer membrane protein assembly factor BamC (protein) Outer membrane protein assembly factor BamD (protein) Outer membrane protein assembly factor BamE (protein)

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7BNQ \| pdb_00007bnq	Download File View File

Lateral-closed conformation of the lid-locked BAM complex (BamA E435C S665C, BamBDCE) by cryoEM

Haysom, S.F.

(2021) Nat Commun 12: 4174-4174

Released	2021-06-02
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Escherichia coli K-12
Macromolecule	Outer membrane protein assembly factor BamA (protein) Outer membrane protein assembly factor BamB (protein) Outer membrane protein assembly factor BamC (protein) Outer membrane protein assembly factor BamD (protein) Outer membrane protein assembly factor BamE (protein)

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7NBX \| pdb_00007nbx	Download File View File

Lateral-open conformation of the lid-locked BAM complex (BamA E435C S665C, BamBDCE) by cryoEM

Haysom, S.F.

(2021) Nat Commun 12: 4174-4174

Released	2021-06-02
Method	ELECTRON MICROSCOPY 4.8 Å
Organisms	Escherichia coli K-12
Macromolecule	Outer membrane protein assembly factor BamA (protein) Outer membrane protein assembly factor BamB (protein) Outer membrane protein assembly factor BamC (protein) Outer membrane protein assembly factor BamD (protein) Outer membrane protein assembly factor BamE (protein)

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7NCS \| pdb_00007ncs	Download File View File

Lateral-open conformation of the lid-locked BAM complex (BamA E435C S665C, BamBDCE) bound by a bactericidal Fab fragment

Haysom, S.F., Machin, J.M.

(2021) Nat Commun 12: 4174-4174

Released	2021-06-02
Method	ELECTRON MICROSCOPY 7.1 Å
Organisms	Escherichia coli K-12 Homo sapiens
Macromolecule	Unique protein chains: 7

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7ND0 \| pdb_00007nd0	Download File View File

lateral-open conformation of the wild-type BAM complex (BamABCDE) bound to a bactericidal Fab fragment

Iadanza, M.G., Haysom, S.H.

(2021) Nat Commun 12: 4174-4174

Released	2021-06-02
Method	ELECTRON MICROSCOPY 5.2 Å
Organisms	Escherichia coli K-12 Homo sapiens
Macromolecule	Unique protein chains: 7

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7NRI \| pdb_00007nri	Download File View File

Structure of the darobactin-bound E. coli BAM complex (BamABCDE)

Jakob, R.P., Kaur, H., Marzinek, J.K., Green, R., Imai, Y., Bolla, J., Robinson, C., Bond, P.J., Lewis, K., Maier, T., Hiller, S.

(2021) Nature 593: 125-129

Released	2021-04-21
Method	ELECTRON MICROSCOPY 3.03 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	Unique protein chains: 6

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7R1W \| pdb_00007r1w	Download File View File

E. coli BAM complex (BamABCDE) bound to dynobactin A

Jakob, R.P., Hiller, S., Maier, T.

(2022) Nat Microbiol 7: 1661-1672

Released	2022-09-28
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Escherichia coli K-12 Photorhabdus australis
Macromolecule	Unique protein chains: 6

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7YE4 \| pdb_00007ye4	Download File View File

BAM-EspP complex structure with BamA-G431C and G781C/EspP-N1293C and A1043C mutations in nanodisc

Shen, C., Chang, S., Luo, Q., Zhang, Z., Luo, B., Lu, G., Zhu, X., Wei, X., Dong, C., Zhang, X., Tang, X., Dong, H.

(2023) Nature 617: 185-193

Released	2023-07-12
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Escherichia coli K-12 Escherichia coli O157:H7
Macromolecule	Unique protein chains: 6

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7YE6 \| pdb_00007ye6	Download File View File

BAM-EspP complex structure with BamA-N427C/EspP-R1297C mutations in nanodisc

Shen, C., Chang, S., Luo, Q., Zhang, Z., Luo, B., Lu, G., Zhu, X., Wei, X., Dong, C., Zhang, X., Tang, X., Dong, H.

(2023) Nature 617: 185-193

Released	2023-07-12
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Escherichia coli K-12 Escherichia coli O157:H7
Macromolecule	Unique protein chains: 6

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8ADG \| pdb_00008adg	Download File View File

Cryo-EM structure of Darobactin 22 bound BAM complex

Yuan, B., Marlovits, T.C.

(2023) Angew Chem Int Ed Engl 62: e202214094-e202214094

Released	2023-01-11
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Escherichia coli Escherichia coli K-12 synthetic construct
Macromolecule	Unique protein chains: 6

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8ADI \| pdb_00008adi	Download File View File

Cryo-EM structure of Darobactin 9 bound BAM complex

Yuan, B., Marlovits, T.C.

(2023) Angew Chem Int Ed Engl 62: e202214094-e202214094

Released	2023-01-11
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Escherichia coli Escherichia coli K-12 synthetic construct
Macromolecule	Unique protein chains: 6

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8BNZ \| pdb_00008bnz	Download File View File

BAM-EspP complex structure with BamA-G431C/EspP-N1293C mutations in nanodisc

Shen, C., Chang, S., Luo, Q., Zhang, Z., Xie, T., Luo, B., Lu, G., Zhu, X., Wei, X., Dong, C., Zhou, R., Zhang, X., Tang, X., Dong, H.

(2023) Nature 617: 185-193

Released	2023-04-26
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Escherichia coli K-12 Escherichia coli O157:H7
Macromolecule	Unique protein chains: 6

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8BO2 \| pdb_00008bo2	Download File View File

BAM-EspP complex structure with BamA-S425C/EspP-S1299C mutations in nanodisc

Shen, C., Chang, S., Luo, Q., Zhang, Z., Xie, T., Luo, B., Lu, G., Zhu, X., Wei, X., Dong, C., Zhou, R., Zhang, X., Tang, X., Dong, H.

(2023) Nature 617: 185-193

Released	2023-04-26
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Escherichia coli K-12
Macromolecule	Unique protein chains: 6

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8BVQ \| pdb_00008bvq	Download File View File

E. coli BAM complex (BamABCDE) bound to darobactin B

Horne, J.E., Fenn, K.L., Radford, S.E., Ranson, N.A.

(2023) Angew Chem Int Ed Engl 62: e202218783-e202218783

Released	2023-05-24
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Escherichia coli Photorhabdus heterorhabditis
Macromolecule	Unique protein chains: 6

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8PZ1 \| pdb_00008pz1	Download File View File

Wait Complex: Lateral open BAM bound Compact SurA

Fenn, K.L., Ranson, N.A.

(2024) Nat Commun 15: 7612-7612

Released	2024-09-25
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Escherichia coli
Macromolecule	Unique protein chains: 6

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8PZ2 \| pdb_00008pz2	Download File View File

Wait Complex: Lateral open BAM bound Extended SurA

Fenn, K.L., Ranson, N.A.

(2024) Nat Commun 15: 7612-7612

Released	2024-09-25
Method	ELECTRON MICROSCOPY 4.2 Å
Organisms	Escherichia coli
Macromolecule	Unique protein chains: 6

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8PZU \| pdb_00008pzu	Download File View File

Wait Complex: BAM bound Darobactin-B and Compact SurA

Fenn, K.L., Ranson, N.A.

(2024) Nat Commun 15: 7612-7612

Released	2024-09-25
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Escherichia coli Photorhabdus heterorhabditis
Macromolecule	Unique protein chains: 7
Unique Ligands	MG

1 to 25 of 33 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

3TGO | pdb_00003tgo

5AYW | pdb_00005ayw

5D0O | pdb_00005d0o

5D0Q | pdb_00005d0q

5EKQ | pdb_00005ekq

6LYQ | pdb_00006lyq

6LYR | pdb_00006lyr

6LYS | pdb_00006lys

6LYU | pdb_00006lyu

7BNQ | pdb_00007bnq

7NBX | pdb_00007nbx

7NCS | pdb_00007ncs

7ND0 | pdb_00007nd0

7NRI | pdb_00007nri

7R1W | pdb_00007r1w

7YE4 | pdb_00007ye4

7YE6 | pdb_00007ye6

8ADG | pdb_00008adg

8ADI | pdb_00008adi

8BNZ | pdb_00008bnz

8BO2 | pdb_00008bo2

8BVQ | pdb_00008bvq

8PZ1 | pdb_00008pz1

8PZ2 | pdb_00008pz2

8PZU | pdb_00008pzu