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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "SLC6A9"

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Search Summary

This query matches 9 Structures.

Refinements

Structure Determination Methodology

experimental (9)

Scientific Name of Source Organism

	Homo sapiens (9)
	unidentified (2)
	Acetivibrio thermocellus ATCC 27405 (1)

Taxonomy

	Eukaryota (9)
	unclassified sequences (2)
	Bacteria (1)

Experimental Method

	ELECTRON MICROSCOPY (7)
	X-RAY DIFFRACTION (2)

Polymer Entity Type

Protein (9)

Refinement Resolution (Å)

	2.5 - 3.0 (2)
	3.0 - 3.5 (5)
	3.5 - 4.0 (2)

Release Date

	2020 - 2024 (6)
	2025 - 2029 (3)

Enzyme Classification Name

Hydrolases (1)

Membrane Protein Annotation

	PDBTM (8)
	MemProtMD (7)
	OPM (2)
	mpstruc (2)

Symmetry Type

Asymmetric (9)

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1 to 9 of 9 Structures

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6ZBV \| pdb_00006zbv	Download File View File

Inward-open structure of human glycine transporter 1 in complex with a benzoylisoindoline inhibitor and sybody Sb_GlyT1#7

Shahsavar, A., Stohler, P., Bourenkov, G., Zimmermann, I., Siegrist, M., Guba, W., Pinard, E., Sinning, S., Seeger, M.A., Schneider, T.R., Dawson, R.J.P., Nissen, P.

(2021) Nature 591: 677-681

Released	2021-03-17
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Homo sapiens unidentified
Macromolecule	Sodium- and chloride-dependent glycine transporter 1,Sodium- and chloride-dependent glycine transporter 1 (protein) Sybody Sb_GlyT1#7 (protein)
Unique Ligands	QET

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6ZPL \| pdb_00006zpl	Download File View File

Inward-open structure of human glycine transporter 1 in complex with a benzoylisoindoline inhibitor, sybody Sb_GlyT1#7 and bound Na and Cl ions.

Shahsavar, A., Stohler, P., Bourenkov, G., Zimmermann, I., Siegrist, M., Guba, W., Pinard, E., Sinning, S., Seeger, M.A., Schneider, T.R., Dawson, R.J.P., Nissen, P.

(2021) Nature 591: 677-681

Released	2021-03-17
Method	X-RAY DIFFRACTION 3.945 Å
Organisms	Acetivibrio thermocellus ATCC 27405 Homo sapiens unidentified
Macromolecule	Endoglucanase H (protein) Sodium- and chloride-dependent glycine transporter 1 (protein) Sybody Sb_GlyT1#7 (protein)
Unique Ligands	CL, NA, QET

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8WFI \| pdb_00008wfi	Download File View File

human glycine transporter 1 in complex with glycine in occluded conformation

Wei, Y., Zhao, Y.

(2024) Cell 187: 1719

Released	2024-04-03
Method	ELECTRON MICROSCOPY 2.58 Å
Organisms	Homo sapiens
Macromolecule	Isoform GlyT-1B of Sodium- and chloride-dependent glycine transporter 1 (protein)
Unique Ligands	CL, GLY, NA

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8WFJ \| pdb_00008wfj	Download File View File

human glycine transporter 1 in complex with ALX-5407 in inward facing conformation

Wei, Y., Zhao, Y.

(2024) Cell 187: 1719

Released	2024-04-03
Method	ELECTRON MICROSCOPY 3.35 Å
Organisms	Homo sapiens
Macromolecule	Sodium- and chloride-dependent glycine transporter 1 (protein)
Unique Ligands	W5F

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8WFK \| pdb_00008wfk	Download File View File

human glycine transporter 1 in complex with SSR504734 in outward facing conformation

Wei, Y., Zhao, Y.

(2024) Cell 187: 1719

Released	2024-04-03
Method	ELECTRON MICROSCOPY 3.22 Å
Organisms	Homo sapiens
Macromolecule	Sodium- and chloride-dependent glycine transporter 1 (protein)
Unique Ligands	CL, NA, W5O

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8WFL \| pdb_00008wfl	Download File View File

human glycine transporter 1 in complex with PF-03463275 in outward facing conformation

Wei, Y., Zhao, Y.

(2024) Cell 187: 1719

Released	2024-04-03
Method	ELECTRON MICROSCOPY 3.03 Å
Organisms	Homo sapiens
Macromolecule	Sodium- and chloride-dependent glycine transporter 1 (protein)
Unique Ligands	W5X

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9J8B \| pdb_00009j8b	Download File View File

Human Glycine Transporter 1 in the Apo State with an Inward-Facing Conformation

Wei, Y., Li, N., Li, R., Zhao, Y.

(2025) Nat Commun 16: 2412-2412

Released	2025-03-05
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Homo sapiens
Macromolecule	Isoform GlyT-1B of Sodium- and chloride-dependent glycine transporter 1 (protein)

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9J8C \| pdb_00009j8c	Download File View File

Human Glycine Transporter 1 in the Sarcosine-Bound State with an Occluded Conformation

Wei, Y., Li, N., Li, R., Zhao, Y.

(2025) Nat Commun 16: 2412-2412

Released	2025-03-05
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Homo sapiens
Macromolecule	Isoform GlyT-1B of Sodium- and chloride-dependent glycine transporter 1 (protein)
Unique Ligands	CL, CLR, NA, SAR

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9J8D \| pdb_00009j8d	Download File View File

Human Glycine Transporter 1 in the Iclepertin-Bound State with an Inward-Facing Conformation

Wei, Y., Li, N., Li, R., Zhao, Y.

(2025) Nat Commun 16: 2412-2412

Released	2025-03-05
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Homo sapiens
Macromolecule	Isoform GlyT-1B of Sodium- and chloride-dependent glycine transporter 1 (protein)
Unique Ligands	A1EBX, CL, CLR, NA

1 to 9 of 9 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

6ZBV | pdb_00006zbv

Inward-open structure of human glycine transporter 1 in complex with a benzoylisoindoline inhibitor and sybody Sb_GlyT1#7

6ZPL | pdb_00006zpl

Inward-open structure of human glycine transporter 1 in complex with a benzoylisoindoline inhibitor, sybody Sb_GlyT1#7 and bound Na and Cl ions.

8WFI | pdb_00008wfi

human glycine transporter 1 in complex with glycine in occluded conformation

8WFJ | pdb_00008wfj

human glycine transporter 1 in complex with ALX-5407 in inward facing conformation

8WFK | pdb_00008wfk

human glycine transporter 1 in complex with SSR504734 in outward facing conformation

8WFL | pdb_00008wfl

human glycine transporter 1 in complex with PF-03463275 in outward facing conformation

9J8B | pdb_00009j8b

Human Glycine Transporter 1 in the Apo State with an Inward-Facing Conformation

9J8C | pdb_00009j8c

Human Glycine Transporter 1 in the Sarcosine-Bound State with an Occluded Conformation

9J8D | pdb_00009j8d

Human Glycine Transporter 1 in the Iclepertin-Bound State with an Inward-Facing Conformation

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

6ZBV | pdb_00006zbv

6ZPL | pdb_00006zpl

8WFI | pdb_00008wfi

8WFJ | pdb_00008wfj

8WFK | pdb_00008wfk

8WFL | pdb_00008wfl

9J8B | pdb_00009j8b

9J8C | pdb_00009j8c

9J8D | pdb_00009j8d