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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "PSIP2"

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Search Summary

This query matches 29 Structures.

Refinements

Structure Determination Methodology

experimental (29)

Scientific Name of Source Organism

	Homo sapiens (29)
	Xenopus laevis (7)
	synthetic construct (7)
	Visna/maedi virus EV1 KV1772 (3)
	Simian T-lymphotropic virus 1 (2)
	DNA molecule (1)
	Human immunodeficiency virus type 2 (ISOLATE ROD) (1)

Taxonomy

	Eukaryota (29)
	other sequences (7)
	Riboviria (6)
	unclassified sequences (1)

Experimental Method

	SOLUTION NMR (11)
	ELECTRON MICROSCOPY (10)
	X-RAY DIFFRACTION (8)

Polymer Entity Type

	Protein (29)
	DNA (10)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (1)
	2.0 - 2.5 (2)
	2.5 - 3.0 (2)
	3.0 - 3.5 (9)
	3.5 - 4.0 (2)
	4.0 - 4.5 (1)

Release Date

	2005 - 2009 (3)
	2010 - 2014 (5)
	2015 - 2019 (9)
	2020 - 2024 (12)

Enzyme Classification Name

	Transferases (5)
	Hydrolases (1)

Symmetry Type

	Asymmetric (21)
	Cyclic (9)
	Dihedral (1)

SCOP Classification

	All alpha proteins (6)
	Artifacts (5)
	All beta proteins (3)
	Alpha and beta proteins (a+b) (1)

AllSelected

1 to 25 of 29 Structures

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2M16 \| pdb_00002m16	Download File View File

P75/LEDGF PWWP Domain

Crowe, B.L., Foster, M.P.

(2013) Nucleic Acids Res 41: 3924-3936

Released	2013-02-27
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	PC4 and SFRS1-interacting protein (protein)

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2MSR \| pdb_00002msr	Download File View File

Solution structure of LEDGF/p75 IBD in complex with MLL1 peptide (140-160)

Cermakova, K., Tesina, P., Demeulemeester, J., El Ashkar, S., Mereau, H., Schwaller, J., Rezacova, P., Veverka, V., De Rijck, J.

(2014) Cancer Res 74: 5139-5151

Released	2014-08-20
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase 2A (protein) PC4 and SFRS1-interacting protein (protein)

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2MTN \| pdb_00002mtn	Download File View File

Solution structure of MLL-IBD complex

Cierpicki, T., Pollock, J., Murai, M.

(2014) Blood 124: 3730-3737

Released	2014-12-03
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase 2A, PC4 and SFRS1-interacting protein fusion (protein)

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2N3A \| pdb_00002n3a	Download File View File

Solution structure of LEDGF/p75 IBD in complex with POGZ peptide (1389-1404)

Tesina, P., Cermakova, K., Horejsi, M., Prochazkova, K., Fabry, M., Sharma, S., Christ, F., Demeulemeester, J., Debyser, Z., De Rijck, J., Veverka, V., Rezacova, P.

(2015) Nat Commun 6: 7968-7968

Released	2015-08-19
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	PC4 and SFRS1-interacting protein (protein) Pogo transposable element with ZNF domain (protein)

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3F9K \| pdb_00003f9k	Download File View File

Two domain fragment of HIV-2 integrase in complex with LEDGF IBD

Hare, S., Cherepanov, P.

(2009) PLoS Pathog 5: e1000259-e1000259

Released	2009-01-20
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens Human immunodeficiency virus type 2 (ISOLATE ROD)
Macromolecule	Integrase (protein) PC4 and SFRS1-interacting protein (protein)
Unique Ligands	MG, ZN

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3HPG \| pdb_00003hpg	Download File View File

Visna virus integrase (residues 1-219) in complex with LEDGF IBD: examples of open integrase dimer-dimer interfaces

Hare, S., Labeja, A., Cherepanov, P.

(2009) PLoS Pathog 5: e1000515-e1000515

Released	2009-07-28
Method	X-RAY DIFFRACTION 3.28 Å
Organisms	Homo sapiens Visna/maedi virus EV1 KV1772
Macromolecule	Integrase (protein) PC4 and SFRS1-interacting protein (protein)
Unique Ligands	ZN

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3HPH \| pdb_00003hph	Download File View File

Closed tetramer of Visna virus integrase (residues 1-219) in complex with LEDGF IBD

Hare, S., Wang, J., Cherepanov, P.

(2009) PLoS Pathog 5: e1000515-e1000515

Released	2009-07-28
Method	X-RAY DIFFRACTION 2.64 Å
Organisms	Homo sapiens Visna/maedi virus EV1 KV1772
Macromolecule	Integrase (protein) PC4 and SFRS1-interacting protein (protein)
Unique Ligands	GOL, PO4, ZN

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3U88 \| pdb_00003u88	Download File View File

Crystal structure of human menin in complex with MLL1 and LEDGF

Huang, J., Wan, B., Lei, M.

(2012) Nature 482: 542-546

Released	2012-02-15
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase 2A (protein) Lens epithelium-derived growth factor (protein) Menin (protein)
Unique Ligands	0BR, CHD, GGB, GLV, SO4

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4FU6 \| pdb_00004fu6	Download File View File

Crystal structure of the PSIP1 PWWP domain

Qin, S., Tempel, W., Xu, C., Wu, H., Dong, A., Cerovina, T., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Min, J., Structural Genomics Consortium (SGC)

(2014) Trends Biochem Sci 39: 536-547

Released	2012-08-29
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	PC4 and SFRS1-interacting protein (protein)
Unique Ligands	GOL, SO4, UNX

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5N88 \| pdb_00005n88	Download File View File

Crystal structure of antibody bound to viral protein

Bao, L., Hannon, C., Cruz-Migoni, A., Ptchelkine, D., Sun, M.-y., Derveni, M., Bunjobpol, W., Chambers, J.S., Simmons, A., Phillips, S.E.V., Rabbitts, T.H.

(2017) Sci Rep 7: 16869-16869

Released	2017-12-20
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	PC4 and SFRS1-interacting protein (protein) VH59 antibody (protein)

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5OYM \| pdb_00005oym	Download File View File

HIV Integrase Binding Domain of Lens Epithelium-Derived Growth Factor

Rabbitts, T.H., Phillips, S.E.V., Cruz-Migoni, A., Carr, S.B., Hannon, C.

(2018) Acta Crystallogr F Struct Biol Commun 74: 143-149

Released	2018-03-07
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens
Macromolecule	PC4 and SFRS1-interacting protein (protein)

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5YI9 \| pdb_00005yi9	Download File View File

Solution structure of the LEDGF/p75 IBD - JPO2 (aa 56-91) complex

Veverka, V.

(2018) Proc Natl Acad Sci U S A 115: E7053-E7062

Released	2018-08-15
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	PC4 and SFRS1-interacting protein,Cell division cycle-associated 7-like protein (protein)

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6EMO \| pdb_00006emo	Download File View File

Solution structure of the LEDGF/p75 IBD - JPO2 (aa 1-32) complex

Veverka, V.

(2018) Proc Natl Acad Sci U S A 115: E7053-E7062

Released	2018-07-25
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	PC4 and SFRS1-interacting protein,LEDGF/p75 IBD-JPO2 M1 (protein)

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6EMP \| pdb_00006emp	Download File View File

Solution structure of the LEDGF/p75 IBD - POGZ (aa 1370-1404) complex

Veverka, V.

(2018) Proc Natl Acad Sci U S A 115: E7053-E7062

Released	2018-07-25
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	PC4 and SFRS1-interacting protein,Pogo transposable element with ZNF domain (protein)

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6EMQ \| pdb_00006emq	Download File View File

Solution structure of the LEDGF/p75 IBD - MLL1 (aa 111-160) complex

Veverka, V.

(2018) Proc Natl Acad Sci U S A 115: E7053-E7062

Released	2018-08-01
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	PC4 and SFRS1-interacting protein,Histone-lysine N-methyltransferase 2A (protein)

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6EMR \| pdb_00006emr	Download File View File

Solution structure of the LEDGF/p75 IBD - IWS1 (aa 446-548) complex

Veverka, V.

(2018) Proc Natl Acad Sci U S A 115: E7053-E7062

Released	2018-07-25
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	PC4 and SFRS1-interacting protein,Protein IWS1 homolog (protein)

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6S01 \| pdb_00006s01	Download File View File

Structure of LEDGF PWWP domain bound H3K36 methylated nucleosome

Wang, H., Farnung, L., Dienemann, C., Cramer, P.

(2020) Nat Struct Mol Biol 27: 8-13

Released	2019-12-18
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Homo sapiens Xenopus laevis synthetic construct
Macromolecule	Unique protein chains: 5 Unique nucleic acid chains: 2

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6TRJ \| pdb_00006trj	Download File View File

LEDGF/p75 IBD dimer

Kugler, M., Brynda, J.

Structure

Released	2020-09-09
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Homo sapiens
Macromolecule	PC4 and SFRS1-interacting protein (protein)

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6TVM \| pdb_00006tvm	Download File View File

LEDGF/p75 dimer (residues 345-467)

Lux, V., Veverka, V.

(2020) Structure 28: 1288-1299.e7

Released	2020-09-09
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	PC4 and SFRS1-interacting protein (protein)

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6ZV0 \| pdb_00006zv0	Download File View File

TFIIS N-terminal domain (TND) from human LEDGF/p75

Veverka, V.

(2021) Science 374: 1113-1121

Released	2021-12-01
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	PC4 and SFRS1-interacting protein (protein)

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7OUF \| pdb_00007ouf	Download File View File

Structure of the STLV intasome:B56 complex bound to the strand-transfer inhibitor XZ450

Barski, M.S., Ballandras-Colas, A., Cronin, N.B., Pye, V.E., Cherepanov, P., Maertens, G.N.

(2021) Nat Commun 12: 4996-4996

Released	2021-08-18
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Homo sapiens Simian T-lymphotropic virus 1
Macromolecule	Integrase (protein) Isoform 3 of PC4 and SFRS1-interacting protein,Isoform Gamma-1 of Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform (protein) DNA (5'-D(APCPTPGPTPGPTPTPTPGPGPCPGPCPTPTPCPTPCPTPC)-3') (nucleic acid) DNA (5'-D(GPAPGPAPGPAPAPGPCPGPCPCPAPAPAPCPAPCPA)-3') (nucleic acid)
Unique Ligands	1L0, MG, ZN

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7OUH \| pdb_00007ouh	Download File View File

Structure of the STLV intasome:B56 complex bound to the strand-transfer inhibitor bictegravir

Barski, M.S., Ballandras-Colas, A., Cronin, N.B., Pye, V.E., Cherepanov, P., Maertens, G.N.

(2021) Nat Commun 12: 4996-4996

Released	2021-08-18
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Homo sapiens Simian T-lymphotropic virus 1
Macromolecule	Integrase (protein) PC4 and SFRS1-interacting protein,Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform (protein) DNA (5'-D(APCPTPGPTPGPTPTPTPGPGPCPGPCPTPTPCPTPCPTPC)-3') (nucleic acid) DNA (5'-D(GPAPGPAPGPAPAPGPCPGPCPCPAPAPAPCPAPCPA)-3') (nucleic acid)
Unique Ligands	KLQ, MG, ZN

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7Z1Z \| pdb_00007z1z	Download File View File

MVV strand transfer complex (STC) intasome in complex with LEDGF/p75 at 3.5 A resolution

Pye, V.E., Ballandras-Colas, A., Cherepanov, P.

(2022) Nat Commun 13: 2416

Released	2022-05-11
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	DNA molecule Homo sapiens Visna/maedi virus EV1 KV1772
Macromolecule	PC4 and SFRS1-interacting protein (protein) Pol polyprotein (protein) DNA (37-MER) (nucleic acid) DNA (5'-D(GPCPTPGPCPGPAPGPAPTPCPCPGPCPTPCPCPGPGPTPG)-3') (nucleic acid) DNA (5'-D(PTPTPGPAPTPTPAPGPGPGPTP*G)-3') (nucleic acid)
Unique Ligands	ZN

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8CBN \| pdb_00008cbn	Download File View File

structure of LEDGF/p75 PWWP domain bound to the H3K36 trimethylated dinucleosome

Koutna, E., Kouba, T., Novacek, J., Veverka, V.

(2023) Nucleic Acids Res 51: 10011-10025

Released	2023-12-27
Method	ELECTRON MICROSCOPY 3.34 Å
Organisms	Homo sapiens Xenopus laevis synthetic construct
Macromolecule	Unique protein chains: 5 Unique nucleic acid chains: 2

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8CBQ \| pdb_00008cbq	Download File View File

structure of LEDGF/p75 PWWP domain bound to the H3K36 trimethylated dinucleosome

Koutna, E., Kouba, T., Novacek, J., Veverka, V.

(2023) Nucleic Acids Res 51: 10011-10025

Released	2023-09-06
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Homo sapiens Xenopus laevis synthetic construct
Macromolecule	Unique protein chains: 5 Unique nucleic acid chains: 2

1 to 25 of 29 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2M16 | pdb_00002m16

2MSR | pdb_00002msr

2MTN | pdb_00002mtn

2N3A | pdb_00002n3a

3F9K | pdb_00003f9k

3HPG | pdb_00003hpg

3HPH | pdb_00003hph

3U88 | pdb_00003u88

4FU6 | pdb_00004fu6

5N88 | pdb_00005n88

5OYM | pdb_00005oym

5YI9 | pdb_00005yi9

6EMO | pdb_00006emo

6EMP | pdb_00006emp

6EMQ | pdb_00006emq

6EMR | pdb_00006emr

6S01 | pdb_00006s01

6TRJ | pdb_00006trj

6TVM | pdb_00006tvm

6ZV0 | pdb_00006zv0

7OUF | pdb_00007ouf

7OUH | pdb_00007ouh

7Z1Z | pdb_00007z1z

8CBN | pdb_00008cbn

8CBQ | pdb_00008cbq