RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Gene Name = "OATP1B1"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 56 Structures.

Refinements

Structure Determination Methodology

experimental (56)

Scientific Name of Source Organism

	Homo sapiens (55)
	Mus musculus (1)

Taxonomy

Eukaryota (56)

Experimental Method

X-RAY DIFFRACTION (56)

Polymer Entity Type

Protein (56)

Refinement Resolution (Å)

	1.5 - 2.0 (26)
	2.0 - 2.5 (21)
	2.5 - 3.0 (2)
	3.0 - 3.5 (6)
	3.5 - 4.0 (1)

Release Date

	2000 - 2004 (4)
	2005 - 2009 (19)
	2010 - 2014 (16)
	2015 - 2019 (6)
	2020 - 2024 (11)

Enzyme Classification Name

Transferases (56)

Symmetry Type

Cyclic (56)

SCOP Classification

Alpha and beta proteins (a/b) (42)

AllSelected

1 to 25 of 56 Structures

Page 1 of 3

Sort by

Explore in 3D

1P5Z \| pdb_00001p5z	Download File View File

Structure of human dCK complexed with cytarabine and ADP-MG

Sabini, E., Ort, S., Monnerjahn, C., Konrad, M., Lavie, A.

(2003) Nat Struct Biol 10: 513-519

Released	2003-07-01
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Deoxycytidine kinase (protein)
Unique Ligands	ADP, AR3, MG

Explore in 3D

1P60 \| pdb_00001p60	Download File View File

Structure of human dCK complexed with 2'-Deoxycytidine and ADP, Space group C 2 2 21

Sabini, E., Ort, S., Monnerjahn, C., Konrad, M., Lavie, A.

(2003) Nat Struct Biol 10: 513-519

Released	2003-07-01
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Homo sapiens
Macromolecule	Deoxycytidine kinase (protein)
Unique Ligands	ADP, DCZ

Explore in 3D

1P61 \| pdb_00001p61	Download File View File

Structure of human dCK complexed with 2'-Deoxycytidine and ADP, P 43 21 2 space group

Sabini, E., Ort, S., Monnerjahn, C., Konrad, M., Lavie, A.

(2003) Nat Struct Biol 10: 513-519

Released	2003-07-01
Method	X-RAY DIFFRACTION 2.21 Å
Organisms	Homo sapiens
Macromolecule	Deoxycytidine kinase (protein)
Unique Ligands	ADP, DCZ

Explore in 3D

1P62 \| pdb_00001p62	Download File View File

Structure of human dCK complexed with gemcitabine and ADP-MG

Sabini, E., Ort, S., Monnerjahn, C., Konrad, M., Lavie, A.

(2003) Nat Struct Biol 10: 513-519

Released	2003-07-01
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mus musculus
Macromolecule	Deoxycytidine kinase (protein)
Unique Ligands	ADP, GEO, MG

Explore in 3D

2A2Z \| pdb_00002a2z	Download File View File

Crystal Structure of human deoxycytidine kinase in complex with deoxycytidine and uridine diphosphate

Godsey, M.H., Ort, S., Sabini, E., Konrad, M., Lavie, A.

(2006) Biochemistry 45: 452-461

Released	2006-01-17
Method	X-RAY DIFFRACTION 3.02 Å
Organisms	Homo sapiens
Macromolecule	Deoxycytidine kinase (protein)
Unique Ligands	CA, DCZ, MG, UDP

Explore in 3D

2A30 \| pdb_00002a30	Download File View File

Crystal structure of human deoxycytidine kinase in complex with deoxycytidine

Godsey, M.H., Ort, S., Sabini, E., Konrad, M., Lavie, A.

(2006) Biochemistry 45: 452-461

Released	2006-01-17
Method	X-RAY DIFFRACTION 3.02 Å
Organisms	Homo sapiens
Macromolecule	Deoxycytidine kinase (protein)
Unique Ligands	CA, DCZ

Explore in 3D

2A7Q \| pdb_00002a7q	Download File View File

Crystal structure of human dCK complexed with clofarabine and ADP

Zhang, Y., Secrist III, J.A., Ealick, S.E.

(2006) Acta Crystallogr D Biol Crystallogr 62: 133-139

Released	2006-01-24
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Homo sapiens
Macromolecule	Deoxycytidine kinase (protein)
Unique Ligands	ADP, CFB, MG

Explore in 3D

2NO0 \| pdb_00002no0	Download File View File

C4S dCK variant of dCK in complex with gemcitabine+ADP

Sabini, E., Hazra, S., Konrad, M., Burley, S.K., Lavie, A.

(2007) J Med Chem 50: 3004-3014

Released	2007-07-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Deoxycytidine kinase (protein)
Unique Ligands	ADP, GEO

Explore in 3D

2NO1 \| pdb_00002no1	Download File View File

C4S dCK variant of dCK in complex with D-dC+ADP

Sabini, E., Hazra, S., Konrad, M., Burley, S.K., Lavie, A.

(2007) J Med Chem 50: 3004-3014

Released	2007-07-03
Method	X-RAY DIFFRACTION 1.91 Å
Organisms	Homo sapiens
Macromolecule	deoxycytidine kinase (protein)
Unique Ligands	ADP, DCZ

Explore in 3D

2NO6 \| pdb_00002no6	Download File View File

C4S dCK variant of dCK in complex with FTC+ADP

Sabini, E., Hazra, S., Konrad, M., Burley, S.K., Lavie, A.

(2007) J Med Chem 50: 3004-3014

Released	2007-07-03
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	deoxycytidine kinase (protein)
Unique Ligands	ADP, ETV

Explore in 3D

2NO7 \| pdb_00002no7	Download File View File

C4S dCK variant of dCK in complex with L-dC+ADP

Sabini, E., Hazra, S., Konrad, M., Burley, S.K., Lavie, A.

(2007) J Med Chem 50: 3004-3014

Released	2007-07-03
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	deoxycytidine kinase (protein)
Unique Ligands	ADP, LDC

Explore in 3D

2NO9 \| pdb_00002no9	Download File View File

The structure of deoxycytidine kinase complexed with troxacitabine and ADP.

Sabini, E., Lavie, A.

(2007) Nucleic Acids Res 35: 186-192

Released	2007-02-13
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Homo sapiens
Macromolecule	deoxycytidine kinase (protein)
Unique Ligands	ADP, LTT

Explore in 3D

2NOA \| pdb_00002noa	Download File View File

The structure of deoxycytidine kinase complexed with lamivudine and ADP.

Sabini, E., Lavie, A.

(2007) Nucleic Acids Res 35: 186-192

Released	2007-02-13
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	deoxycytidine kinase (protein)
Unique Ligands	3TC, ADP

Explore in 3D

2QRN \| pdb_00002qrn	Download File View File

Human Deoxycytidine kinase dCMP, UDP, Mg ion product complex

Ealick, S.E., Soriano, E.V.

(2007) Acta Crystallogr D Biol Crystallogr 63: 1201-1207

Released	2007-12-11
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Homo sapiens
Macromolecule	Deoxycytidine kinase (protein)
Unique Ligands	DCM, MG, UDP

Explore in 3D

2QRO \| pdb_00002qro	Download File View File

Human Deoxycytidine kinase dAMP, UDP, Mg ion product complex

Ealick, S.E., Soriano, E.V.

(2007) Acta Crystallogr D Biol Crystallogr 63: 1201-1207

Released	2007-12-11
Method	X-RAY DIFFRACTION 3.45 Å
Organisms	Homo sapiens
Macromolecule	Deoxycytidine kinase (protein)
Unique Ligands	D5M, MG, UDP

Explore in 3D

2ZI3 \| pdb_00002zi3	Download File View File

C4S-E247A dCK variant of dCK in complex with D-dA+ADP

Sabini, E., Lavie, A.

(2008) J Mol Biology 378: 607-621

Released	2008-04-22
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Deoxycytidine kinase (protein)
Unique Ligands	3D1, ADP

Explore in 3D

2ZI4 \| pdb_00002zi4	Download File View File

C4S dCK variant of dCK in complex with L-dA+ADP

Sabini, E., Lavie, A.

(2008) J Mol Biology 378: 607-621

Released	2008-04-22
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Deoxycytidine kinase (protein)
Unique Ligands	3L1, ADP, MG

Explore in 3D

2ZI5 \| pdb_00002zi5	Download File View File

C4S dCK variant of dCK in complex with L-dA+UDP

Sabini, E., Lavie, A.

(2008) J Mol Biology 378: 607-621

Released	2008-04-22
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Homo sapiens
Macromolecule	Deoxycytidine kinase (protein)
Unique Ligands	3L1, UDP

Explore in 3D

2ZI6 \| pdb_00002zi6	Download File View File

C4S dCK variant of dCK in complex with D-dA+UDP

Sabini, E., Lavie, A.

(2008) J Mol Biology 378: 607-621

Released	2008-04-22
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Homo sapiens
Macromolecule	Deoxycytidine kinase (protein)
Unique Ligands	3D1, UDP

Explore in 3D

2ZI7 \| pdb_00002zi7	Download File View File

C4S dCK variant of dCK in complex with D-dG+UDP

Sabini, E., Lavie, A.

(2008) J Med Chem 51: 4219-4225

Released	2008-07-08
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Homo sapiens
Macromolecule	Deoxycytidine kinase (protein)
Unique Ligands	GNG, UDP

Explore in 3D

2ZI9 \| pdb_00002zi9	Download File View File

C4S-E247A dCK variant of dCK in complex with cladribine+ADP

Sabini, E., Lavie, A.

(2008) J Med Chem 51: 4219-4225

Released	2008-07-08
Method	X-RAY DIFFRACTION 2.51 Å
Organisms	Homo sapiens
Macromolecule	Deoxycytidine kinase (protein)
Unique Ligands	ADP, CL9

Explore in 3D

2ZIA \| pdb_00002zia	Download File View File

C4S dCK variant of dCK in complex with cladribine+UDP

Sabini, E., Lavie, A.

(2008) J Med Chem 51: 4219-4225

Released	2008-07-08
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Deoxycytidine kinase (protein)
Unique Ligands	CL9, UDP

Explore in 3D

3HP1 \| pdb_00003hp1	Download File View File

Crystal structure of human dCK R104M/D133A in complex with L-dT and ADP

Hazra, S., Lavie, A.

(2009) Biochemistry 48: 1256-1263

Released	2009-06-16
Method	X-RAY DIFFRACTION 2.31 Å
Organisms	Homo sapiens
Macromolecule	Deoxycytidine kinase (protein)
Unique Ligands	ADP, LLT

Explore in 3D

3KFX \| pdb_00003kfx	Download File View File

Human dCK complex with 5-Me dC and ADP

Hazra, S., Lavie, A.

(2010) Biochemistry 49: 6784-6790

Released	2010-09-15
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Homo sapiens
Macromolecule	Deoxycytidine kinase (protein)
Unique Ligands	ADP, MCY

Explore in 3D

3MJR \| pdb_00003mjr	Download File View File

Human dCK complex with Acyclic Nucleoside

Hazra, S., Lavie, A.

(2010) J Med Chem 53: 5792-5800

Released	2010-07-28
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Deoxycytidine kinase (protein)
Unique Ligands	AC2, UDP

1 to 25 of 56 Structures

Page 1 of 3

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1P5Z | pdb_00001p5z

1P60 | pdb_00001p60

1P61 | pdb_00001p61

1P62 | pdb_00001p62

2A2Z | pdb_00002a2z

2A30 | pdb_00002a30

2A7Q | pdb_00002a7q

2NO0 | pdb_00002no0

2NO1 | pdb_00002no1

2NO6 | pdb_00002no6

2NO7 | pdb_00002no7

2NO9 | pdb_00002no9

2NOA | pdb_00002noa

2QRN | pdb_00002qrn

2QRO | pdb_00002qro

2ZI3 | pdb_00002zi3

2ZI4 | pdb_00002zi4

2ZI5 | pdb_00002zi5

2ZI6 | pdb_00002zi6

2ZI7 | pdb_00002zi7

2ZI9 | pdb_00002zi9

2ZIA | pdb_00002zia

3HP1 | pdb_00003hp1

3KFX | pdb_00003kfx

3MJR | pdb_00003mjr