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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "MAP1ALC3"

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Search Summary

This query matches 50 Structures.

Refinements

Structure Determination Methodology

experimental (50)

Scientific Name of Source Organism

	Homo sapiens (47)
	Mus musculus (3)
	Rattus norvegicus (2)
	Influenza A virus (1)
	Legionella pneumophila (1)
	Legionella pneumophila subsp. pneumophila (1)
	Legionella pneumophila subsp. pneumophila str. Philadelphia 1 (1)
	Macaca mulatta (1)

Taxonomy

	Eukaryota (50)
	Bacteria (3)
	Riboviria (1)

Experimental Method

	X-RAY DIFFRACTION (47)
	SOLUTION NMR (3)

Polymer Entity Type

Protein (50)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (29)
	2.0 - 2.5 (12)
	2.5 - 3.0 (5)

Release Date

	2005 - 2009 (1)
	2010 - 2014 (5)
	2015 - 2019 (18)
	2020 - 2024 (26)

Enzyme Classification Name

	Hydrolases (3)
	Transferases (1)

Symmetry Type

	Asymmetric (46)
	Cyclic (4)

SCOP Classification

	Alpha and beta proteins (a+b) (20)
	Artifacts (9)

AllSelected

1 to 25 of 50 Structures

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2K6Q \| pdb_00002k6q	Download File View File

LC3 p62 complex structure

Noda, N., Kumeta, H., Nakatogawa, H., Satoo, K., Adachi, W., Ishii, J., Fujioka, Y., Ohsumi, Y., Inagaki, F.

To be published

Released	2008-09-02
Method	SOLUTION NMR
Organisms	Rattus norvegicus
Macromolecule	Microtubule-associated proteins 1A/1B light chain 3B (protein) p62_peptide from Sequestosome-1 (protein)

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2LUE \| pdb_00002lue	Download File View File

LC3B OPTN-LIR Ptot complex structure

Rogov, V.V., Rozenknop, A., Loehr, F., Guentert, P., Doetsch, V.

(2013) Biochem J 454: 459-466

Released	2013-07-17
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Microtubule-associated proteins 1A/1B light chain 3B (protein) Optineurin (protein)

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2N9X \| pdb_00002n9x	Download File View File

LC3 FUNDC1 complex structure

Xia, B., Kuang, Y.

(2016) Autophagy 12: 2363-2373

Released	2016-12-14
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	FUN14 domain-containing protein 1 (protein) Microtubule-associated proteins 1A/1B light chain 3B (protein)

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3VTU \| pdb_00003vtu	Download File View File

Crystal structure of human LC3B_2-119

Suzuki, H., Kawasaki, M., Kato, R., Wakatsuki, S.

(2013) Biochem J 454: 459-466

Released	2013-06-26
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Microtubule-associated proteins 1A/1B light chain 3B (protein)
Unique Ligands	SO4

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3VTV \| pdb_00003vtv	Download File View File

Crystal structure of Optineurin LIR-fused human LC3B_2-119

Suzuki, H., Kawasaki, M., Kato, R., Wakatsuki, S.

(2013) Biochem J 454: 459-466

Released	2013-06-26
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Optineurin, microtubule-associated proteins 1A/1B light chain 3B (protein)
Unique Ligands	SO4

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3VTW \| pdb_00003vtw	Download File View File

Crystal structure of T7-tagged Optineurin LIR-fused human LC3B_2-119

Suzuki, H., Kawasaki, M., Kato, R., Wakatsuki, S.

(2013) Biochem J 454: 459-466

Released	2013-06-26
Method	X-RAY DIFFRACTION 2.52 Å
Organisms	Homo sapiens
Macromolecule	Optineurin, microtubule-associated proteins 1A/1B light chain 3B (protein)
Unique Ligands	SO4

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3WAO \| pdb_00003wao	Download File View File

Crystal structure of Atg13 LIR-fused human LC3B_2-119

Suzuki, H., Tabata, K., Morita, E., Kawasaki, M., Kato, R., Dobson, R.C.J., Yoshimori, T., Wakatsuki, S.

(2014) Structure 22: 47-58

Released	2013-12-25
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Autophagy-related protein 13, Microtubule-associated proteins 1A/1B light chain 3B (protein)

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3X0W \| pdb_00003x0w	Download File View File

Crystal structure of PLEKHM1 LIR-fused human LC3B_2-119

Suzuki, H., McEwan, D.G., Popovic, D., Gubas, A., Terawaki, S., Stadel, D., Coxon, F., Stegmann, D.M., Bhogaraju, S., Maddi, K., Kirchhoff, A., Gatti, E., Helfrich, M.H., Behrends, C., Pierre, P., Dikic, I., Wakatsuki, S.

(2015) Mol Cell 57: 39-54

Released	2015-01-14
Method	X-RAY DIFFRACTION 2.71 Å
Organisms	Homo sapiens
Macromolecule	Microtubule-associated proteins 1A/1B light chain 3B (protein)

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4WAA \| pdb_00004waa	Download File View File

Crystal structure of Nix LIR-fused human LC3B_2-119

Suzuki, H., Ravichandran, A.C., Dobson, R.C.J., Novak, I., Wakatsuki, S.

(2017) Sci Rep 7: 1131-1131

Released	2015-09-09
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens
Macromolecule	Microtubule-associated proteins 1A/1B light chain 3B (protein)

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5D94 \| pdb_00005d94	Download File View File

Crystal structure of LC3-LIR peptide complex

Takagi, K., Mizushima, T., Johansen, T.

(2015) J Biological Chem 290: 29361-29374

Released	2015-10-21
Method	X-RAY DIFFRACTION 1.53 Å
Organisms	Homo sapiens
Macromolecule	Microtubule-associated proteins 1A/1B light chain 3B (protein) Peptide from FYVE and coiled-coil domain-containing protein 1 (protein)

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5DCN \| pdb_00005dcn	Download File View File

Crystal structure of LC3 in complex with TECPR2 LIR

Stadel, D., Huber, J., Dotsch, V., Rogov, V.V., Behrends, C., Akutsu, M.

(2015) Mol Cell 60: 89-104

Released	2016-03-09
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Microtubule-associated proteins 1A/1B light chain 3B (protein)
Unique Ligands	SO4

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5GMV \| pdb_00005gmv	Download File View File

LC3B-FUNDC1 complex

Lv, M., Wang, C., Li, F.

(2017) Protein Cell 8: 25-38

Released	2017-03-08
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens
Macromolecule	Microtubule-associated proteins 1A/1B light chain 3B (protein) Peptide from FUN14 domain-containing protein 1 (protein)

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5MS2 \| pdb_00005ms2	Download File View File

Crystal structure of the Legionella pneumophila effector protein RavZ in complex with human LC3B

Pantoom, S., Vetter, I.R., Wu, Y.W.

(2017) Elife 6:

Released	2017-04-19
Method	X-RAY DIFFRACTION 2.47 Å
Organisms	Homo sapiens Legionella pneumophila subsp. pneumophila str. Philadelphia 1
Macromolecule	Legionella pneumophila effector protein RavZ (protein) Microtubule-associated proteins 1A/1B light chain 3B (protein)

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5MS5 \| pdb_00005ms5	Download File View File

Low-salt structure of RavZ LIR2-fused human LC3B

Pantoom, S., Vetter, I.R., Wu, Y.W.

(2017) Elife 6:

Released	2017-04-19
Method	X-RAY DIFFRACTION 1.53 Å
Organisms	Homo sapiens Legionella pneumophila
Macromolecule	RavZ,Microtubule-associated proteins 1A/1B light chain 3B (protein)
Unique Ligands	GOL, SO4

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5MS6 \| pdb_00005ms6	Download File View File

High-salt structure of RavZ LIR2-fused human LC3B

Pantoom, S., Vetter, I.R., Wu, Y.W.

(2017) Elife 6:

Released	2017-04-19
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Microtubule-associated proteins 1A/1B light chain 3B (protein)

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5V4K \| pdb_00005v4k	Download File View File

Crystal structure of NEDD4 LIR-fused human LC3B_2-119

Qiu, Y., Zheng, Y., Schulman, B.

(2017) Protein Sci 26: 1674-1680

Released	2017-05-17
Method	X-RAY DIFFRACTION 2.099 Å
Organisms	Homo sapiens
Macromolecule	Microtubule-associated proteins 1A/1B light chain 3B,Microtubule-associated proteins 1A/1B light chain 3B,Microtubule-associated proteins 1A/1B light chain 3B (protein)
Unique Ligands	GOL, SO4

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5W9A \| pdb_00005w9a	Download File View File

The structure of the Trim5alpha Bbox- coiled coil in complex LC3B

Keown, J.R., Goldstone, D.C.

(2018) J Biological Chem 293: 18378-18386

Released	2018-10-10
Method	X-RAY DIFFRACTION 2.74 Å
Organisms	Homo sapiens Macaca mulatta
Macromolecule	Microtubule-associated proteins 1A/1B light chain 3B (protein) Tripartite motif-containing protein 5 (protein)
Unique Ligands	ZN

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5WRD \| pdb_00005wrd	Download File View File

Crystal structure of LC3B in complex with FYCO1 LIR

Sakurai, S., Ohto, U., Shimizu, T.

(2017) Acta Crystallogr F Struct Biol Commun 73: 130-137

Released	2017-03-29
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mus musculus
Macromolecule	Microtubule-associated proteins 1A/1B light chain 3B (protein) Peptide from FYVE and coiled-coil domain-containing protein 1 (protein)
Unique Ligands	GOL

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5XAC \| pdb_00005xac	Download File View File

CLIR - LC3B

Kwon, D.H., Kim, L., Song, H.K.

(2017) Biochem Biophys Res Commun 490: 1093-1099

Released	2017-07-12
Method	X-RAY DIFFRACTION 1.701 Å
Organisms	Homo sapiens
Macromolecule	Microtubule-associated proteins 1A/1B light chain 3B (protein)

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5XAD \| pdb_00005xad	Download File View File

NLIR - LC3B fusion protein

Kwon, D.H., Kim, L., Song, H.K.

(2017) Biochem Biophys Res Commun 490: 1093-1099

Released	2017-07-12
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Homo sapiens Legionella pneumophila subsp. pneumophila
Macromolecule	Microtubule-associated proteins 1A/1B light chain 3B (protein) Uncharacterised protein (protein)

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5XAE \| pdb_00005xae	Download File View File

mutNLIR_LC3B

Kwon, D.H., Kim, L., Song, H.K.

(2017) Biochem Biophys Res Commun 490: 1093-1099

Released	2017-07-12
Method	X-RAY DIFFRACTION 1.996 Å
Organisms	Homo sapiens
Macromolecule	Microtubule-associated proteins 1A/1B light chain 3B (protein)

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5YIQ \| pdb_00005yiq	Download File View File

Crystal structure of AnkG LIR/LC3B complex

Li, J., Zhu, R., Chen, K., Zheng, H., Yuan, C., Zhang, H., Wang, C., Zhang, M.

(2018) Nat Chem Biol 14: 778-787

Released	2018-05-23
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Mus musculus Rattus norvegicus
Macromolecule	Ankyrin-3 (protein) Microtubule-associated proteins 1A/1B light chain 3B (protein)
Unique Ligands	ZN

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5YIS \| pdb_00005yis	Download File View File

Crystal Structure of AnkB LIR/LC3B complex

Li, J., Zhu, R., Chen, K., Zheng, H., Yuan, C., Zhang, H., Wang, C., Zhang, M.

(2018) Nat Chem Biol 14: 778-787

Released	2018-05-23
Method	X-RAY DIFFRACTION 2.201 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Ankyrin-2 (protein) Microtubule-associated proteins 1A/1B light chain 3B (protein)
Unique Ligands	GOL, PO4

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6J04 \| pdb_00006j04	Download File View File

Crystal structure of full length human LC3B delta G120 mutant (2_125)

Ding, Y., Lu, B.X., Wang, Z.Y.

(2019) Nature 575: 203-209

Released	2019-11-06
Method	X-RAY DIFFRACTION 1.899 Å
Organisms	Homo sapiens
Macromolecule	Microtubule-associated proteins 1A/1B light chain 3B (protein)
Unique Ligands	SO4

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6LAN \| pdb_00006lan	Download File View File

Structure of CCDC50 and LC3B complex

Liu, L., Li, J., Hou, P.

(2021) Cell Res 31: 62-79

Released	2020-09-30
Method	X-RAY DIFFRACTION 1.41 Å
Organisms	Homo sapiens
Macromolecule	Coiled-coil domain-containing protein 50,Microtubule-associated proteins 1A/1B light chain 3B (protein)

1 to 25 of 50 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2K6Q | pdb_00002k6q

2LUE | pdb_00002lue

2N9X | pdb_00002n9x

3VTU | pdb_00003vtu

3VTV | pdb_00003vtv

3VTW | pdb_00003vtw

3WAO | pdb_00003wao

3X0W | pdb_00003x0w

4WAA | pdb_00004waa

5D94 | pdb_00005d94

5DCN | pdb_00005dcn

5GMV | pdb_00005gmv

5MS2 | pdb_00005ms2

5MS5 | pdb_00005ms5

5MS6 | pdb_00005ms6

5V4K | pdb_00005v4k

5W9A | pdb_00005w9a

5WRD | pdb_00005wrd

5XAC | pdb_00005xac

5XAD | pdb_00005xad

5XAE | pdb_00005xae

5YIQ | pdb_00005yiq

5YIS | pdb_00005yis

6J04 | pdb_00006j04

6LAN | pdb_00006lan