RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Chemical ID(s) = AWJ

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Chemical Attributes

Help

NOT

Count

Add Subquery

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 18 Structures.

Refinements

Structure Determination Methodology

experimental (18)

Scientific Name of Source Organism

	Aliarcobacter butzleri RM4018 (8)
	Mus musculus (5)
	Streptomyces lividans (5)
	Aequorea victoria (3)
	Rattus norvegicus (3)
	Aliarcobacter butzleri (2)

Taxonomy

	Bacteria (15)
	Eukaryota (8)

Experimental Method

	X-RAY DIFFRACTION (15)
	ELECTRON MICROSCOPY (3)

Polymer Entity Type

Protein (18)

Refinement Resolution (Å)

	2.0 - 2.5 (5)
	2.5 - 3.0 (5)
	3.0 - 3.5 (7)
	3.5 - 4.0 (1)

Release Date

	2005 - 2009 (4)
	2010 - 2014 (1)
	2015 - 2019 (10)
	2020 - 2024 (3)

Membrane Protein Annotation

	PDBTM (18)
	mpstruc (17)
	MemProtMD (15)
	OPM (8)

Symmetry Type

	Cyclic (15)
	Asymmetric (3)

SCOP Classification

	All beta proteins (5)
	Membrane and cell surface proteins and peptides (12)
	Artifacts (11)

AllSelected

1 to 18 of 18 Structures

Page 1 of 1

Sort by

Explore in 3D

2BOB \| pdb_00002bob	Download File View File

Potassium channel KcsA-Fab complex in thallium with tetrabutylammonium (TBA)

Lenaeus, M.J., Vamvouka, M., Focia, P.J., Gross, A.

(2005) Nat Struct Mol Biol 12: 454

Released	2005-04-27
Method	X-RAY DIFFRACTION 2.76 Å
Organisms	Mus musculus Streptomyces lividans
Macromolecule	ANTIBODY FAB FRAGMENT HEAVY CHAIN (protein) ANTIBODY FAB FRAGMENT LIGHT CHAIN (protein) POTASSIUM CHANNEL KCSA (protein)
Unique Ligands	CO, TBA, TL

Explore in 3D

2BOC \| pdb_00002boc	Download File View File

Potassium channel KcsA-Fab complex in thallium with tetraethylarsonium (TEAs)

Lenaeus, M.J., Vamvouka, M., Focia, P.J., Gross, A.

(2005) Nat Struct Mol Biol 12: 454

Released	2005-04-27
Method	X-RAY DIFFRACTION 3.01 Å
Organisms	Mus musculus Streptomyces lividans
Macromolecule	ANTIBODY FAB FRAGMENT HEAVY CHAIN (protein) ANTIBODY FAB FRAGMENT LIGHT CHAIN (protein) POTASSIUM CHANNEL KCSA (protein)
Unique Ligands	CO, T1A, TL

Explore in 3D

2JK5 \| pdb_00002jk5	Download File View File

Potassium Channel KcsA in complex with Tetrabutylammonium in high K

Lenaeus, M.J., Focia, P.J., Wagner, T., Gross, A.

(2014) Biochemistry 53: 5365

Released	2009-11-17
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mus musculus Streptomyces lividans
Macromolecule	ANTIBODY FAB FRAGMENT HEAVY CHAIN (protein) ANTIBODY FAB FRAGMENT LIGHT CHAIN (protein) VOLTAGE-GATED POTASSIUM CHANNEL (protein)
Unique Ligands	CO, F09, HP6, K, L2C, TBA

Explore in 3D

2W0F \| pdb_00002w0f	Download File View File

Potassium Channel KcsA-Fab Complex with Tetraoctylammonium

Lenaeus, M.J., Focia, P.J., Wagner, T., Gross, A.

(2014) Biochemistry 53: 5365

Released	2009-11-17
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mus musculus Streptomyces lividans
Macromolecule	ANTIBODY FAB FRAGMENT HEAVY CHAIN (protein) ANTIBODY FAB FRAGMENT LIGHT CHAIN (protein) VOLTAGE-GATED POTASSIUM CHANNEL (protein)
Unique Ligands	CO, DGA, F09, HX0, K

Explore in 3D

4UUJ \| pdb_00004uuj	Download File View File

POTASSIUM CHANNEL KCSA-FAB WITH TETRAHEXYLAMMONIUM

Lenaeus, M.J., Burdette, D., Wagner, T., Focia, P.J., Gross, A.

(2014) Biochemistry 53: 5365

Released	2014-08-27
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mus musculus Streptomyces lividans
Macromolecule	ANTIBODY FAB FRAGMENT HEAVY CHAIN (protein) ANTIBODY FAB FRAGMENT LIGHT CHAIN (protein) VOLTAGE-GATED POTASSIUM CHANNEL KCSA (protein)
Unique Ligands	CO, DGA, F09, IND, K, PO4, XA7

Explore in 3D

5VB2 \| pdb_00005vb2	Download File View File

Crystal structure of the NavAb voltage-gated sodium channel in a closed conformation

Lenaeus, M.J., Catterall, W.A.

(2017) Proc Natl Acad Sci U S A 114: E3051-E3060

Released	2017-04-05
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Aliarcobacter butzleri
Macromolecule	Ion transport protein (protein)
Unique Ligands	CL, CPS, PO4, PX4

Explore in 3D

5VB8 \| pdb_00005vb8	Download File View File

Crystal structure of the NavAb voltage-gated sodium channel in an open state

Lenaeus, M.J., Catterall, W.A.

(2017) Proc Natl Acad Sci U S A 114: E3051-E3060

Released	2017-04-05
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Aliarcobacter butzleri
Macromolecule	Ion transport protein (protein)
Unique Ligands	NA, PX4, SO4

Explore in 3D

6MVV \| pdb_00006mvv	Download File View File

NavAb voltage-gated sodium channel, I217C/F203A

Lenaeus, M.J., Catterall, W.A.

(2018) Proc Natl Acad Sci U S A 115: 13111-13116

Released	2018-12-05
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Aliarcobacter butzleri RM4018
Macromolecule	Ion transport protein (protein)
Unique Ligands	PO4, PX4

Explore in 3D

6MVW \| pdb_00006mvw	Download File View File

NavAb voltage-gated sodium channel, I217C/F203W

Lenaeus, M.J., Catterall, W.A.

(2018) Proc Natl Acad Sci U S A 115: 13111-13116

Released	2018-12-05
Method	X-RAY DIFFRACTION 3.198 Å
Organisms	Aliarcobacter butzleri RM4018
Macromolecule	Ion transport protein (protein)
Unique Ligands	PO4, PX4

Explore in 3D

6MVX \| pdb_00006mvx	Download File View File

NavAb Voltage-gated Sodium Channel, I217C, in Complex with Class 1C Anti-arrhythmic Flecainide

Lenaeus, M.J., Catterall, W.A.

(2018) Proc Natl Acad Sci U S A 115: 13111-13116

Released	2018-12-05
Method	X-RAY DIFFRACTION 3.455 Å
Organisms	Aliarcobacter butzleri RM4018
Macromolecule	Ion transport protein (protein)
Unique Ligands	K4D, PO4

Explore in 3D

6MVY \| pdb_00006mvy	Download File View File

NavAb voltage-gated sodium channel, residues 1-226, crystallized in the presence of Class 1B Anti-arrhythmic drug Lidocaine

Lenaeus, M.J., Catterall, W.A.

(2018) Proc Natl Acad Sci U S A 115: 13111-13116

Released	2018-12-05
Method	X-RAY DIFFRACTION 3.002 Å
Organisms	Aliarcobacter butzleri RM4018
Macromolecule	Ion transport protein (protein)
Unique Ligands	PX4, SO4

Explore in 3D

6MWA \| pdb_00006mwa	Download File View File

NavAb Voltage-gated Sodium Channel, residues 1-239

Lenaeus, M.J., Catterall, W.A.

(2019) J Gen Physiol 151: 174-185

Released	2018-12-19
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Aliarcobacter butzleri RM4018
Macromolecule	Ion transport protein (protein)
Unique Ligands	CPS, PX4, SO4

Explore in 3D

6MWB \| pdb_00006mwb	Download File View File

NavAb Voltage-gated Sodium Channel, residues 1-239 with mutation T206A

Lenaeus, M.J., Catterall, W.A.

(2019) J Gen Physiol 151: 174-185

Released	2018-12-19
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Aliarcobacter butzleri RM4018
Macromolecule	Ion transport protein (protein)
Unique Ligands	CPS, PX4, SO4

Explore in 3D

6MWD \| pdb_00006mwd	Download File View File

NavAb Voltage-gated Sodium Channel, residues 1-239 with mutation T206S

Lenaeus, M.J., Catterall, W.A.

(2019) J Gen Physiol 151: 174-185

Released	2018-12-19
Method	X-RAY DIFFRACTION 2.327 Å
Organisms	Aliarcobacter butzleri RM4018
Macromolecule	Ion transport protein (protein)
Unique Ligands	ACT, CPS, PX4, SO4

Explore in 3D

6MWG \| pdb_00006mwg	Download File View File

NavAb Voltage-gated Sodium Channel, residues 1-239, with mutation T206V

Lenaeus, M.J., Catterall, W.A.

(2019) J Gen Physiol 151: 174-185

Released	2018-12-19
Method	X-RAY DIFFRACTION 2.501 Å
Organisms	Aliarcobacter butzleri RM4018
Macromolecule	Ion transport protein (protein)
Unique Ligands	ACT, CPS, PX4

Explore in 3D

6UZ0 \| pdb_00006uz0	Download File View File

Cardiac sodium channel with flecainide

Jiang, D., Shi, H., Tonggu, L., Lenaeus, M.J., Zheng, N., Catterall, W.A.

(2020) Cell 180: 122-134.e10

Released	2020-01-01
Method	ELECTRON MICROSCOPY 3.24 Å
Organisms	Aequorea victoria Rattus norvegicus
Macromolecule	Sodium channel protein type 5 subunit alpha,Green fluorescent protein (protein)
Unique Ligands	6OU, 9Z9, K4D, NAG
Unique branched monosaccharides	BMA, NAG

Explore in 3D

6UZ3 \| pdb_00006uz3	Download File View File

Cardiac sodium channel

Jiang, D., Shi, H., Tonggu, L., Lenaeus, M.J., Zheng, N., Catterall, W.A.

(2020) Cell 180: 122-134.e10

Released	2020-01-01
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Aequorea victoria Rattus norvegicus
Macromolecule	Sodium channel protein type 5 subunit alpha,Green fluorescent protein (protein)
Unique Ligands	6OU, 9Z9, NAG
Unique branched monosaccharides	BMA, NAG

Explore in 3D

8F6P \| pdb_00008f6p	Download File View File

Rat Cardiac Sodium Channel with Ranolazine Bound

Lenaeus, M.J., Tonggu, L.

(2023) Nat Cardiovasc Res 2: 587-594

Released	2023-04-12
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Aequorea victoria Rattus norvegicus
Macromolecule	Sodium channel protein type 5 subunit alpha,Green fluorescent protein (protein)
Unique Ligands	6OU, BMA, NAG, XHO, Y01
Unique branched monosaccharides	NAG

1 to 18 of 18 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

2BOB | pdb_00002bob

Potassium channel KcsA-Fab complex in thallium with tetrabutylammonium (TBA)

2BOC | pdb_00002boc

Potassium channel KcsA-Fab complex in thallium with tetraethylarsonium (TEAs)

2JK5 | pdb_00002jk5

Potassium Channel KcsA in complex with Tetrabutylammonium in high K

2W0F | pdb_00002w0f

Potassium Channel KcsA-Fab Complex with Tetraoctylammonium

4UUJ | pdb_00004uuj

POTASSIUM CHANNEL KCSA-FAB WITH TETRAHEXYLAMMONIUM

5VB2 | pdb_00005vb2

Crystal structure of the NavAb voltage-gated sodium channel in a closed conformation

5VB8 | pdb_00005vb8

Crystal structure of the NavAb voltage-gated sodium channel in an open state

6MVV | pdb_00006mvv

NavAb voltage-gated sodium channel, I217C/F203A

6MVW | pdb_00006mvw

NavAb voltage-gated sodium channel, I217C/F203W

6MVX | pdb_00006mvx

NavAb Voltage-gated Sodium Channel, I217C, in Complex with Class 1C Anti-arrhythmic Flecainide

6MVY | pdb_00006mvy

NavAb voltage-gated sodium channel, residues 1-226, crystallized in the presence of Class 1B Anti-arrhythmic drug Lidocaine

6MWA | pdb_00006mwa

NavAb Voltage-gated Sodium Channel, residues 1-239

6MWB | pdb_00006mwb

NavAb Voltage-gated Sodium Channel, residues 1-239 with mutation T206A

6MWD | pdb_00006mwd

NavAb Voltage-gated Sodium Channel, residues 1-239 with mutation T206S

6MWG | pdb_00006mwg

NavAb Voltage-gated Sodium Channel, residues 1-239, with mutation T206V

6UZ0 | pdb_00006uz0

Cardiac sodium channel with flecainide

6UZ3 | pdb_00006uz3

Cardiac sodium channel

8F6P | pdb_00008f6p

Rat Cardiac Sodium Channel with Ranolazine Bound

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Membrane Protein Annotation

Symmetry Type

SCOP Classification

2BOB | pdb_00002bob

2BOC | pdb_00002boc

2JK5 | pdb_00002jk5

2W0F | pdb_00002w0f

4UUJ | pdb_00004uuj

5VB2 | pdb_00005vb2

5VB8 | pdb_00005vb8

6MVV | pdb_00006mvv

6MVW | pdb_00006mvw

6MVX | pdb_00006mvx

6MVY | pdb_00006mvy

6MWA | pdb_00006mwa

6MWB | pdb_00006mwb

6MWD | pdb_00006mwd

6MWG | pdb_00006mwg

6UZ0 | pdb_00006uz0

6UZ3 | pdb_00006uz3

8F6P | pdb_00008f6p