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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chemical ID(s) = AV0

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Search Summary

This query matches 31 Structures.

Refinements

Structure Determination Methodology

experimental (31)

Scientific Name of Source Organism

	Homo sapiens (17)
	Mus musculus (5)
	Sus scrofa (5)
	Clostridium perfringens (3)
	Lama glama (2)
	synthetic construct (2)
	Escherichia coli (1)
	Escherichia coli CFT073 (1)
	Escherichia coli SE11 (1)
	Mycobacterium tuberculosis (1)

More...

Taxonomy

	Eukaryota (26)
	Bacteria (8)
	other sequences (2)

Experimental Method

	ELECTRON MICROSCOPY (28)
	X-RAY DIFFRACTION (3)

Polymer Entity Type

Protein (31)

Refinement Resolution (Å)

	2.0 - 2.5 (4)
	2.5 - 3.0 (14)
	3.0 - 3.5 (6)
	3.5 - 4.0 (5)
	4.0 - 4.5 (1)
	> 4.5 (1)

Release Date

	2015 - 2019 (1)
	2020 - 2024 (30)

Enzyme Classification Name

	Hydrolases (5)
	Transferases (2)

Membrane Protein Annotation

	PDBTM (27)
	MemProtMD (10)
	mpstruc (10)
	OPM (7)

Symmetry Type

	Cyclic (20)
	Asymmetric (10)
	Dihedral (1)

AllSelected

1 to 25 of 31 Structures

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6IIA \| pdb_00006iia	Download File View File

MexB in complex with LMNG

Nakashima, R., Sakurai, K., Nakao, K.

(2019) Sci Rep 9: 4359-4359

Released	2019-03-27
Method	X-RAY DIFFRACTION 2.91 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	Multidrug resistance protein MexB (protein)
Unique Ligands	AV0

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6VP0 \| pdb_00006vp0	Download File View File

Human Diacylglycerol Acyltransferase 1 in complex with oleoyl-CoA

Wang, L., Qian, H., Han, Y., Nian, Y., Ren, Z., Zhang, H., Hu, L., Prasad, B.V.V., Yan, N., Zhou, M.

(2020) Nature 581: 329-332

Released	2020-05-13
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Homo sapiens
Macromolecule	Diacylglycerol O-acyltransferase 1 (protein)
Unique Ligands	3VV, AV0, P5S, POV

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7MDF \| pdb_00007mdf	Download File View File

Full-length S95A ClbP bound to N-acyl-D-asparagine analog

Velilla, J.A., Volpe, M.R., Gaudet, R.

(2023) Nat Chem Biol 19: 151-158

Released	2022-09-28
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli CFT073
Macromolecule	Beta-lactamase (protein)
Unique Ligands	2PE, 97N, AV0, CL, DMS, SO4, Z9A, Z9G

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7NVH \| pdb_00007nvh	Download File View File

Cryo-EM structure of the mycolic acid transporter MmpL3 from M. tuberculosis

Adams, O., Deme, J.C., Parker, J.L., Lea, S.M., Newstead, S.

(2021) Structure 29: 1182-1191.e4

Released	2021-06-16
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Trehalose monomycolate exporter MmpL3 (protein)
Unique Ligands	AV0

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7ONJ \| pdb_00007onj	Download File View File

Mechanosensitive channel MscS solubilized with LMNG in open conformation

Rasmussen, T., Flegler, V.J., Boettcher, B.

(2021) Proc Natl Acad Sci U S A 118:

Released	2021-09-01
Method	ELECTRON MICROSCOPY 2.3 Å
Organisms	Escherichia coli
Macromolecule	Mechanosensitive channel of small conductance (MscS) (protein)
Unique Ligands	AV0, LMT, PEE

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7OOA \| pdb_00007ooa	Download File View File

Mechanosensitive channel MscS solubilized with LMNG in open conformation with added lipid

Rasmussen, T., Flegler, V.J., Boettcher, B.

(2021) Proc Natl Acad Sci U S A 118:

Released	2021-09-01
Method	ELECTRON MICROSCOPY 2.7 Å
Organisms	Escherichia coli SE11
Macromolecule	Mechanosensitive channel of small conductance (MscS) (protein)
Unique Ligands	AV0, LMT, PEE

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7RPH \| pdb_00007rph	Download File View File

Cryo-EM structure of murine Dispatched 'R' conformation

Asarnow, D., Wang, Q., Ding, K., Cheng, Y., Beachy, P.A.

(2021) Nature 599: 320-324

Released	2021-10-27
Method	ELECTRON MICROSCOPY 2.5 Å
Organisms	Mus musculus
Macromolecule	Protein dispatched homolog 1 (protein)
Unique Ligands	AV0, NA, NAG, Y01

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7RPI \| pdb_00007rpi	Download File View File

Cryo-EM structure of murine Dispatched 'T' conformation

Asarnow, D., Wang, Q., Ding, K., Cheng, Y., Beachy, P.A.

(2021) Nature 599: 320-324

Released	2021-10-27
Method	ELECTRON MICROSCOPY 2.5 Å
Organisms	Mus musculus
Macromolecule	Protein dispatched homolog 1 (protein)
Unique Ligands	AV0, NA, NAG, Y01

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7RPK \| pdb_00007rpk	Download File View File

Cryo-EM structure of murine Dispatched in complex with Sonic hedgehog

Asarnow, D., Wang, Q., Ding, K., Cheng, Y., Beachy, P.A.

(2021) Nature 599: 320-324

Released	2021-10-27
Method	ELECTRON MICROSCOPY 2.7 Å
Organisms	Mus musculus
Macromolecule	Protein dispatched homolog 1 (protein) Sonic hedgehog protein (protein)
Unique Ligands	6OE, AV0, CA, NA, NAG, SO4, Y01, ZN

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8HKP \| pdb_00008hkp	Download File View File

Structurally hetero-junctional human Cx36/GJD2 gap junction channel in detergents (C6 symmetry)

Lee, S.N., Cho, H.J., Jeong, H., Ryu, B., Lee, H.J., Lee, H.H., Woo, J.S.

(2023) Nat Commun 14: 1347-1347

Released	2023-03-22
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Homo sapiens
Macromolecule	Gap junction delta-2 protein (protein)
Unique Ligands	AV0

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8J74 \| pdb_00008j74	Download File View File

Human high-affinity choline transporter CHT1 in the HC-3-bound outward-facing open conformation, dimeric state

Gao, Y., Qiu, Y., Zhao, Y.

(2024) Nat Struct Mol Biol 31: 701-709

Released	2024-04-03
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Homo sapiens
Macromolecule	High affinity choline transporter 1 (protein)
Unique Ligands	AV0, HC6, R16, Y01
Unique branched monosaccharides	BMA, NAG

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8JEW \| pdb_00008jew	Download File View File

Human sodium-dependent vitamin C transporter 1 bound to L-ascorbic acid in an inward-open state

Kobayashi, T.A., Kusakizako, T., Nureki, O.

(2024) Nat Commun 15: 5569-5569

Released	2024-05-22
Method	ELECTRON MICROSCOPY 2.49 Å
Organisms	Homo sapiens
Macromolecule	Solute carrier family 23 member 1 (protein)
Unique Ligands	ASC, AV0, CLR, LBN, NA, NAG, PLM

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8JEZ \| pdb_00008jez	Download File View File

Human sodium-dependent vitamin C transporter 1 in an apo inward-open state

Kobayashi, T.A., Kusakizako, T., Nureki, O.

(2024) Nat Commun 15: 5569-5569

Released	2024-06-19
Method	ELECTRON MICROSCOPY 2.6 Å
Organisms	Homo sapiens
Macromolecule	Solute carrier family 23 member 1 (protein)
Unique Ligands	AV0, CLR, LBN, PLM
Unique branched monosaccharides	NAG

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8JF1 \| pdb_00008jf1	Download File View File

Human sodium-dependent vitamin C transporter 1 in an apo occluded state

Kobayashi, T.A., Kusakizako, T., Nureki, O.

(2024) Nat Commun 15: 5569-5569

Released	2024-05-22
Method	ELECTRON MICROSCOPY 2.85 Å
Organisms	Homo sapiens
Macromolecule	Solute carrier family 23 member 1 (protein)
Unique Ligands	AV0, CLR, NAG, PLM, Y01

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8JZN \| pdb_00008jzn	Download File View File

Structure of a fungal 1,3-beta-glucan synthase

Zhao, C., You, Z., Chen, D., Hang, J., Wang, Z., Meng, J., Wang, L., Zhao, P., Qiao, J., Yun, C., Bai, L.

(2023) Sci Adv 9: eadh7820-eadh7820

Released	2023-10-04
Method	ELECTRON MICROSCOPY 2.47 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	1,3-beta-glucan synthase component FKS1 (protein)
Unique Ligands	AV0, ERG, POV
Unique branched monosaccharides	NAG

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8SGW \| pdb_00008sgw	Download File View File

Pendrin in complex with chloride

Wang, L., Hoang, A., Zhou, M.

(2024) Nat Commun 15: 346-346

Released	2024-02-07
Method	ELECTRON MICROSCOPY 2.5 Å
Organisms	Sus scrofa
Macromolecule	Pendrin (protein)
Unique Ligands	AV0, CL, CLR, DMU, LBN

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8SH3 \| pdb_00008sh3	Download File View File

Pendrin in complex with iodide

Wang, L., Hoang, A., Zhou, M.

(2024) Nat Commun 15: 346-346

Released	2024-02-07
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Sus scrofa
Macromolecule	Pendrin (protein)
Unique Ligands	AV0, CLR, IOD, LBN

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8SHC \| pdb_00008shc	Download File View File

Pendrin in complex with Niflumic acid

Wang, L., Hoang, A., Zhou, M.

(2024) Nat Commun 15: 346-346

Released	2024-02-07
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Sus scrofa
Macromolecule	Pendrin (protein)
Unique Ligands	AV0, CL, CLR, LBN, NFL

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8SIE \| pdb_00008sie	Download File View File

Pendrin in complex with bicarbonate

Wang, L., Hoang, A., Zhou, M.

(2024) Nat Commun 15: 346-346

Released	2024-02-07
Method	ELECTRON MICROSCOPY 2.7 Å
Organisms	Sus scrofa
Macromolecule	Pendrin (protein)
Unique Ligands	AV0, BCT, CLR, DMU, LBN

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8U4V \| pdb_00008u4v	Download File View File

Cryo-EM structure of human claudin-4 complex with Clostridium perfringens enterotoxin C-terminal domain, sFab COP-1, and Nanobody

Vecchio, A.J.

(2024) Commun Biol 7: 733-733

Released	2023-10-25
Method	ELECTRON MICROSCOPY 2.99 Å
Organisms	Clostridium perfringens Homo sapiens synthetic construct
Macromolecule	Anti-fab nanobody (protein) COP-1 sFab Heavy Chain (protein) COP-1 sFab Light Chain (protein) Claudin-4 (protein) Heat-labile enterotoxin B chain (protein)
Unique Ligands	AV0

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8U5B \| pdb_00008u5b	Download File View File

Cryo-EM structure of human claudin-4 complex with Clostridium perfringens enterotoxin C-terminal domain and sFab COP-1

Vecchio, A.J.

(2024) Commun Biol 7: 733-733

Released	2023-09-27
Method	ELECTRON MICROSCOPY 5.3 Å
Organisms	Clostridium perfringens Homo sapiens synthetic construct
Macromolecule	COP-1 sFab Heavy Chain (protein) COP-1 sFab Light Chain (protein) Claudin-4 (protein) Heat-labile enterotoxin B chain (protein)
Unique Ligands	AV0

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8UUK \| pdb_00008uuk	Download File View File

Pendrin in apo

Wang, L., Hoang, A., Zhou, M.

(2024) Nat Commun 15: 346-346

Released	2024-02-07
Method	ELECTRON MICROSCOPY 2.5 Å
Organisms	Sus scrofa
Macromolecule	Pendrin (protein)
Unique Ligands	AV0, CLR, LBN

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8W1V \| pdb_00008w1v	Download File View File

The beta2 adrenergic receptor bound to a bitopic ligand

Gaiser, B., Danielsen, M., Xu, X., Jorgensen, K., Fronik, P., Marcher-Rorsted, E., Wrobe, T., Hirata, K., Liu, X., Mathiesen, J., Pedersen, D.

(2024) J Med Chem 67: 11053-11068

Released	2024-07-17
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens Lama glama
Macromolecule	Beta-2 adrenergic receptor,Endolysin (protein) Nanobody60 (protein)
Unique Ligands	A1AE2, AV0

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8XM6 \| pdb_00008xm6	Download File View File

Cryo-EM structure of human ZnT1 WT, in the absence of zinc, determined in an outward-facing conformation

Qu, Q., Long, Y., Zhou, Z.

(2024) EMBO Rep 25: 5006-5025

Released	2024-10-30
Method	ELECTRON MICROSCOPY 3.48 Å
Organisms	Homo sapiens
Macromolecule	Proton-coupled zinc antiporter SLC30A1 (protein)
Unique Ligands	AV0, Y01, ZN

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8XMA \| pdb_00008xma	Download File View File

Cryo-EM structure of human ZnT1 WT, in the presence of zinc, determined in an outward-facing conformation

Qu, Q., Long, Y., Zhou, Z.

(2024) EMBO Rep 25: 5006-5025

Released	2024-10-30
Method	ELECTRON MICROSCOPY 2.65 Å
Organisms	Homo sapiens
Macromolecule	Proton-coupled zinc antiporter SLC30A1 (protein)
Unique Ligands	AV0, Y01, ZN

1 to 25 of 31 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

6IIA | pdb_00006iia

6VP0 | pdb_00006vp0

7MDF | pdb_00007mdf

7NVH | pdb_00007nvh

7ONJ | pdb_00007onj

7OOA | pdb_00007ooa

7RPH | pdb_00007rph

7RPI | pdb_00007rpi

7RPK | pdb_00007rpk

8HKP | pdb_00008hkp

8J74 | pdb_00008j74

8JEW | pdb_00008jew

8JEZ | pdb_00008jez

8JF1 | pdb_00008jf1

8JZN | pdb_00008jzn

8SGW | pdb_00008sgw

8SH3 | pdb_00008sh3

8SHC | pdb_00008shc

8SIE | pdb_00008sie

8U4V | pdb_00008u4v

8U5B | pdb_00008u5b

8UUK | pdb_00008uuk

8W1V | pdb_00008w1v

8XM6 | pdb_00008xm6

8XMA | pdb_00008xma