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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Yamaji, N."

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This query matches 5 Structures.

Refinements

Structure Determination Methodology

experimental (5)

Scientific Name of Source Organism

	Allagelena opulenta (1)
	Homo sapiens (1)
	Macrothele gigas (1)
	Opisthacanthus madagascariensis (1)
	Oryza sativa Japonica Group (1)

Taxonomy

	Eukaryota (3)
	Eukaryota (eukaryotes) (2)

Experimental Method

	SOLUTION NMR (4)
	X-RAY DIFFRACTION (1)

Polymer Entity Type

Protein (5)

Refinement Resolution (Å)

1.5 - 2.0 (1)

Release Date

	2000 - 2004 (2)
	2005 - 2009 (2)
	2020 - 2024 (1)

Membrane Protein Annotation

	MemProtMD (1)
	OPM (1)
	PDBTM (1)
	mpstruc (1)

Symmetry Type

	Asymmetric (4)
	Cyclic (1)

SCOP Classification

	All beta proteins (1)
	Small proteins (1)

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1 to 5 of 5 Structures

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1J8K \| pdb_00001j8k	Download File View File

NMR STRUCTURE OF THE FIBRONECTIN EDA DOMAIN, NMR, 20 STRUCTURES

Niimi, T., Osawa, M., Yamaji, N., Yasunaga, K., Sakashita, H., Mase, T., Tanaka, A., Fujita, S.

(2001) J Biomol NMR 21: 281-284

Released	2002-02-06
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	FIBRONECTIN (protein)

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1WMT \| pdb_00001wmt	Download File View File

Scorpion toxin (IsTX) from Opisthacanthus madagascariensis

Yamaji, N., Dai, L., Sugase, K., Andriantsiferana, M., Nakajima, T., Iwashita, T.

(2004) Eur J Biochem 271: 3855-3864

Released	2004-10-19
Method	SOLUTION NMR
Organisms	Opisthacanthus madagascariensis
Macromolecule	IsTX (protein)

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2E2S \| pdb_00002e2s	Download File View File

Solution structure of agelenin, an insecticidal peptide from the venom of Agelena opulenta

Yamaji, N.

(2007) FEBS Lett 581: 3789-3794

Released	2007-08-07
Method	SOLUTION NMR
Organisms	Allagelena opulenta
Macromolecule	Agelenin (protein)

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2ROO \| pdb_00002roo	Download File View File

Solution structure of Magi4, a spider toxin from Macrothele gigas

Yamaji, N.

To be published

Released	2009-04-07
Method	SOLUTION NMR
Organisms	Macrothele gigas
Macromolecule	Neurotoxin magi-4 (protein)

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7CJS \| pdb_00007cjs	Download File View File

structure of aquaporin

Saitoh, Y., Ma, J.F., Suga, M.

(2021) Nat Commun 12: 6236-6236

Released	2021-11-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Oryza sativa Japonica Group
Macromolecule	Aquaporin NIP2-1 (protein)
Unique Ligands	BOG, NA, PG4, Y01

1 to 5 of 5 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1J8K | pdb_00001j8k

NMR STRUCTURE OF THE FIBRONECTIN EDA DOMAIN, NMR, 20 STRUCTURES

1WMT | pdb_00001wmt

Scorpion toxin (IsTX) from Opisthacanthus madagascariensis

2E2S | pdb_00002e2s

Solution structure of agelenin, an insecticidal peptide from the venom of Agelena opulenta

2ROO | pdb_00002roo

Solution structure of Magi4, a spider toxin from Macrothele gigas

7CJS | pdb_00007cjs

structure of aquaporin

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1J8K | pdb_00001j8k

NMR STRUCTURE OF THE FIBRONECTIN EDA DOMAIN, NMR, 20 STRUCTURES

1WMT | pdb_00001wmt

Scorpion toxin (IsTX) from Opisthacanthus madagascariensis

2E2S | pdb_00002e2s

Solution structure of agelenin, an insecticidal peptide from the venom of Agelena opulenta

2ROO | pdb_00002roo

Solution structure of Magi4, a spider toxin from Macrothele gigas

7CJS | pdb_00007cjs

structure of aquaporin