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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Wang, C.X."

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Search Summary

This query matches 18 Structures.

Refinements

Structure Determination Methodology

experimental (18)

Scientific Name of Source Organism

	Homo sapiens (14)
	Rattus norvegicus (4)

Taxonomy

Eukaryota (18)

Experimental Method

X-RAY DIFFRACTION (18)

Polymer Entity Type

Protein (18)

Refinement Resolution (Å)

	1.5 - 2.0 (14)
	2.0 - 2.5 (4)

Release Date

	2005 - 2009 (5)
	2010 - 2014 (6)
	2015 - 2019 (4)
	2020 - 2024 (3)

Enzyme Classification Name

Hydrolases (14)

Symmetry Type

	Cyclic (14)
	Asymmetric (4)

SCOP Classification

	Alpha and beta proteins (a/b) (5)
	All alpha proteins (1)

AllSelected

1 to 18 of 18 Structures

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Explore in 3D

3D7D \| pdb_00003d7d	Download File View File

A high resolution crystal structure of human glutamate carboxypeptidase II (GCPII) in a complex with DCFBD, a urea-based inhibitor

Lubkowski, J., Barinka, C.

(2008) J Med Chem 51: 7737-7743

Released	2008-12-30
Method	X-RAY DIFFRACTION 1.69 Å
Organisms	Homo sapiens
Macromolecule	Glutamate carboxypeptidase 2 (protein)
Unique Ligands	CA, CL, FBD, NAG, ZN
Unique branched monosaccharides	BMA, MAN, NAG

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3D7F \| pdb_00003d7f	Download File View File

A high resolution crystal structure of human glutamate carboxypeptidase II (GCPII) in a complex with DCIT, a urea-based inhibitor

Lubkowski, J., Barinka, C.

(2008) J Med Chem 51: 7737-7743

Released	2008-12-30
Method	X-RAY DIFFRACTION 1.54 Å
Organisms	Homo sapiens
Macromolecule	Glutamate carboxypeptidase 2 (protein)
Unique Ligands	CA, CL, NAG, YBY, ZN
Unique branched monosaccharides	BMA, MAN, NAG

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3D7G \| pdb_00003d7g	Download File View File

A high resolution crystal structure of human glutamate carboxypeptidase II (GCPII) in a complex with DCMC, a urea-based inhibitor

Lubkowski, J., Barinka, C.

(2008) J Med Chem 51: 7737-7743

Released	2008-12-30
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	Glutamate carboxypeptidase 2 (protein)
Unique Ligands	CA, CL, MUD, NAG, ZN
Unique branched monosaccharides	BMA, MAN, NAG

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3D7H \| pdb_00003d7h	Download File View File

A high resolution crystal structure of human glutamate carboxypeptidase II (GCPII) in a complex with DCIBzL, a urea-based inhibitor

Lubkowski, J., Barinka, C.

(2008) J Med Chem 51: 7737-7743

Released	2008-12-30
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Homo sapiens
Macromolecule	Glutamate carboxypeptidase 2 (protein)
Unique Ligands	CA, CL, NAG, YC2, ZN
Unique branched monosaccharides	BMA, MAN, NAG

Explore in 3D

3IWW \| pdb_00003iww	Download File View File

Crystal structure of human glutamate carboxypeptidase II (GCPII) in a complex with DBIBzL, a urea-based inhibitor

Barinka, C., Lubkowski, J.

(2010) Bioorg Med Chem Lett 20: 392-397

Released	2009-11-24
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Glutamate carboxypeptidase 2 (protein)
Unique Ligands	CA, CL, NAG, YZE, ZN
Unique branched monosaccharides	BMA, MAN, NAG

Explore in 3D

4OC0 \| pdb_00004oc0	Download File View File

X-ray structure of of human glutamate carboxypeptidase II (GCPII) in a complex with CCIBzL, a urea-based inhibitor N~2~-[(1-carboxycyclopropyl)carbamoyl]-N~6~-(4-iodobenzoyl)-L-lysine

Pavlicek, J., Ptacek, J., Cerny, J., Byun, Y., Skultetyova, L., Pomper, M., Lubkowski, J., Barinka, C.

(2014) Bioorg Med Chem Lett 24: 2340-2345

Released	2014-05-21
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Glutamate carboxypeptidase 2 (protein)
Unique Ligands	2R7, CA, CL, NAG, ZN
Unique branched monosaccharides	BMA, MAN, NAG

Explore in 3D

4OC1 \| pdb_00004oc1	Download File View File

X-ray structure of of human glutamate carboxypeptidase II (GCPII) in a complex with COIBzL, a urea-based inhibitor (2S)-2-[({(1S)-1-carboxy-2-[(2S)-oxiran-2-yl]ethyl}carbamoyl)amino]-6-[(4-iodobenzoyl)amino]hexanoic acid

Pavlicek, J., Ptacek, J., Cerny, J., Byun, Y., Skultetyova, L., Pomper, M., Lubkowski, J., Barinka, C.

(2014) Bioorg Med Chem Lett 24: 2340-2345

Released	2014-05-21
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	Glutamate carboxypeptidase 2 (protein)
Unique Ligands	2QS, CA, CL, NAG, ZN
Unique branched monosaccharides	BMA, MAN, NAG

Explore in 3D

4OC2 \| pdb_00004oc2	Download File View File

X-ray structure of of human glutamate carboxypeptidase II (GCPII) in a complex with CEIBzL, a urea-based inhibitor N~2~-{[(1S)-1-carboxybut-3-yn-1-yl]carbamoyl}-N~6~-(4-iodobenzoyl)-L-lysine

Pavlicek, J., Ptacek, J., Cerny, J., Byun, Y., Skultetyova, L., Pomper, M., Lubkowski, J., Barinka, C.

(2014) Bioorg Med Chem Lett 24: 2340-2345

Released	2014-05-21
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Homo sapiens
Macromolecule	Glutamate carboxypeptidase 2 (protein)
Unique Ligands	2QQ, CA, CL, NAG, ZN
Unique branched monosaccharides	BMA, FUC, MAN, NAG

Explore in 3D

4OC3 \| pdb_00004oc3	Download File View File

X-ray structure of of human glutamate carboxypeptidase II (GCPII) in a complex with CFIBzL, a urea-based inhibitor N~2~-{[(1S)-1-carboxy-2-(furan-2-yl)ethyl]carbamoyl}-N~6~-(4-iodobenzoyl)-L-lysine

Pavlicek, J., Ptacek, J., Cerny, J., Byun, Y., Skultetyova, L., Pomper, M., Lubkowski, J., Barinka, C.

(2014) Bioorg Med Chem Lett 24: 2340-2345

Released	2014-05-21
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Homo sapiens
Macromolecule	Glutamate carboxypeptidase 2 (protein)
Unique Ligands	2QP, CA, CL, NAG, ZN
Unique branched monosaccharides	BMA, FUC, MAN, NAG

Explore in 3D

4OC4 \| pdb_00004oc4	Download File View File

X-ray structure of of human glutamate carboxypeptidase II (GCPII) in a complex with CPIBzL, a urea-based inhibitor N~2~-{[(1S)-1-carboxy-2-(pyridin-4-yl)ethyl]carbamoyl}-N~6~-(4-iodobenzoyl)-L-lysine

Pavlicek, J., Ptacek, J., Cerny, J., Byun, Y., Skultetyova, L., Pomper, M., Lubkowski, J., Barinka, C.

(2014) Bioorg Med Chem Lett 24: 2340-2345

Released	2014-05-21
Method	X-RAY DIFFRACTION 1.66 Å
Organisms	Homo sapiens
Macromolecule	Glutamate carboxypeptidase 2 (protein)
Unique Ligands	2QN, CA, CL, NAG, ZN
Unique branched monosaccharides	BMA, MAN, NAG

Explore in 3D

4OC5 \| pdb_00004oc5	Download File View File

X-ray structure of of human glutamate carboxypeptidase II (GCPII) in a complex with CHIBzL, a urea-based inhibitor N~2~-{[(S)-carboxy(4-hydroxyphenyl)methyl]carbamoyl}-N~6~-(4-iodobenzoyl)-L-lysine

Pavlicek, J., Ptacek, J., Cerny, J., Byun, Y., Skultetyova, L., Pomper, M., Lubkowski, J., Barinka, C.

(2014) Bioorg Med Chem Lett 24: 2340-2345

Released	2014-05-21
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Glutamate carboxypeptidase 2 (protein)
Unique Ligands	2QM, CA, CL, NAG, ZN
Unique branched monosaccharides	BMA, MAN, NAG

Explore in 3D

5DEX \| pdb_00005dex	Download File View File

Crystal structure of GluN1/GluN2A NMDA receptor agonist binding domains with glycine and antagonist, phenyl-ACEPC

Mou, T.-C., Conti, P., Pinto, A., Tamborini, L., Sprang, S.R., Hansen, K.B.

(2017) Proc Natl Acad Sci U S A

Released	2016-09-14
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Rattus norvegicus
Macromolecule	Glutamate receptor ionotropic, NMDA 1 (protein) Glutamate receptor ionotropic, NMDA 2A (protein)
Unique Ligands	5E0, GLY

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5VIH \| pdb_00005vih	Download File View File

Crystal structure of GluN1/GluN2A NMDA receptor agonist binding domains with glycine and antagonist, 4-fluorophenyl-ACEPC

Mou, T.-C., Conti, P., Pinto, A., Tamborini, L., Sprang, S.R., Hansen, K.B.

(2017) Proc Natl Acad Sci U S A 114: E6942-E6951

Released	2017-04-26
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Rattus norvegicus
Macromolecule	Glutamate receptor ionotropic, NMDA 1 (protein) Glutamate receptor ionotropic, NMDA 2A (protein)
Unique Ligands	5DZ, GLY, PEG

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5VII \| pdb_00005vii	Download File View File

Crystal structure of GluN1/GluN2A NMDA receptor agonist binding domains with glycine and antagonist, 4-(3-fluoropropyl)phenyl-ACEPC

Mou, T.-C., Conti, P., Pinto, A., Tamborini, L., Sprang, S.R., Hansen, K.B.

(2017) Proc Natl Acad Sci U S A 114: E6942-E6951

Released	2017-04-26
Method	X-RAY DIFFRACTION 1.951 Å
Organisms	Rattus norvegicus
Macromolecule	Glutamate receptor ionotropic, NMDA 1 (protein) Glutamate receptor ionotropic, NMDA 2A (protein)
Unique Ligands	5DY, GLY, PEG, TRS

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5VIJ \| pdb_00005vij	Download File View File

Crystal structure of GluN1/GluN2A NMDA receptor agonist binding domains with glycine and antagonist, 4-bromophenyl-ACEPC

Mou, T.-C., Conti, P., Pinto, A., Tamborini, L., Sprang, S.R., Hansen, K.B.

(2017) Proc Natl Acad Sci U S A 114: E6942-E6951

Released	2017-04-26
Method	X-RAY DIFFRACTION 2.105 Å
Organisms	Rattus norvegicus
Macromolecule	Glutamate receptor ionotropic, NMDA 1 (protein) Glutamate receptor ionotropic, NMDA 2A (protein)
Unique Ligands	5DX, GLY

Explore in 3D

6RBC \| pdb_00006rbc	Download File View File

X-ray structure of human glutamate carboxypeptidase II (GCPII) in complex with a inhibitor KB1157

Barinka, C., Kutil, Z.

(2020) J Med Chem 63: 3261-3273

Released	2020-05-13
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Homo sapiens
Macromolecule	Glutamate carboxypeptidase 2 (protein)
Unique Ligands	CA, CL, JX5, NAG, ZN
Unique branched monosaccharides	BMA, MAN, NAG

Explore in 3D

6S1X \| pdb_00006s1x	Download File View File

X-ray structure of human glutamate carboxypeptidase II (GCPII)-E424M inactive mutant, in complex with a inhibitor KB1160

Barinka, C., Kutil, Z.

(2020) J Med Chem 63: 3261-3273

Released	2020-05-13
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Homo sapiens
Macromolecule	Glutamate carboxypeptidase 2 (protein)
Unique Ligands	CA, CL, KRZ, NAG, ZN
Unique branched monosaccharides	BMA, MAN, NAG

Explore in 3D

7BFZ \| pdb_00007bfz	Download File View File

X-ray structure of human prostate-specific membrane antigen(PSMA) in complex with a inhibitor Glu-490

Rakhimbekova, A., Motlova, L., Barinka, C.

(2021) Nat Commun 12: 5460-5460

Released	2021-08-18
Method	X-RAY DIFFRACTION 1.73 Å
Organisms	Homo sapiens
Macromolecule	Glutamate carboxypeptidase 2 (protein)
Unique Ligands	CA, CL, EDO, NA, NAG, PEG, TKZ, ZN
Unique branched monosaccharides	BMA, FUC, MAN, NAG

1 to 18 of 18 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

3D7D | pdb_00003d7d

A high resolution crystal structure of human glutamate carboxypeptidase II (GCPII) in a complex with DCFBD, a urea-based inhibitor

3D7F | pdb_00003d7f

A high resolution crystal structure of human glutamate carboxypeptidase II (GCPII) in a complex with DCIT, a urea-based inhibitor

3D7G | pdb_00003d7g

A high resolution crystal structure of human glutamate carboxypeptidase II (GCPII) in a complex with DCMC, a urea-based inhibitor

3D7H | pdb_00003d7h

A high resolution crystal structure of human glutamate carboxypeptidase II (GCPII) in a complex with DCIBzL, a urea-based inhibitor

3IWW | pdb_00003iww

Crystal structure of human glutamate carboxypeptidase II (GCPII) in a complex with DBIBzL, a urea-based inhibitor

4OC0 | pdb_00004oc0

X-ray structure of of human glutamate carboxypeptidase II (GCPII) in a complex with CCIBzL, a urea-based inhibitor N~2~-[(1-carboxycyclopropyl)carbamoyl]-N~6~-(4-iodobenzoyl)-L-lysine

4OC1 | pdb_00004oc1

X-ray structure of of human glutamate carboxypeptidase II (GCPII) in a complex with COIBzL, a urea-based inhibitor (2S)-2-[({(1S)-1-carboxy-2-[(2S)-oxiran-2-yl]ethyl}carbamoyl)amino]-6-[(4-iodobenzoyl)amino]hexanoic acid

4OC2 | pdb_00004oc2

X-ray structure of of human glutamate carboxypeptidase II (GCPII) in a complex with CEIBzL, a urea-based inhibitor N~2~-{[(1S)-1-carboxybut-3-yn-1-yl]carbamoyl}-N~6~-(4-iodobenzoyl)-L-lysine

4OC3 | pdb_00004oc3

X-ray structure of of human glutamate carboxypeptidase II (GCPII) in a complex with CFIBzL, a urea-based inhibitor N~2~-{[(1S)-1-carboxy-2-(furan-2-yl)ethyl]carbamoyl}-N~6~-(4-iodobenzoyl)-L-lysine

4OC4 | pdb_00004oc4

X-ray structure of of human glutamate carboxypeptidase II (GCPII) in a complex with CPIBzL, a urea-based inhibitor N~2~-{[(1S)-1-carboxy-2-(pyridin-4-yl)ethyl]carbamoyl}-N~6~-(4-iodobenzoyl)-L-lysine

4OC5 | pdb_00004oc5

X-ray structure of of human glutamate carboxypeptidase II (GCPII) in a complex with CHIBzL, a urea-based inhibitor N~2~-{[(S)-carboxy(4-hydroxyphenyl)methyl]carbamoyl}-N~6~-(4-iodobenzoyl)-L-lysine

5DEX | pdb_00005dex

Crystal structure of GluN1/GluN2A NMDA receptor agonist binding domains with glycine and antagonist, phenyl-ACEPC

5VIH | pdb_00005vih

Crystal structure of GluN1/GluN2A NMDA receptor agonist binding domains with glycine and antagonist, 4-fluorophenyl-ACEPC

5VII | pdb_00005vii

Crystal structure of GluN1/GluN2A NMDA receptor agonist binding domains with glycine and antagonist, 4-(3-fluoropropyl)phenyl-ACEPC

5VIJ | pdb_00005vij

Crystal structure of GluN1/GluN2A NMDA receptor agonist binding domains with glycine and antagonist, 4-bromophenyl-ACEPC

6RBC | pdb_00006rbc

X-ray structure of human glutamate carboxypeptidase II (GCPII) in complex with a inhibitor KB1157

6S1X | pdb_00006s1x

X-ray structure of human glutamate carboxypeptidase II (GCPII)-E424M inactive mutant, in complex with a inhibitor KB1160

7BFZ | pdb_00007bfz

X-ray structure of human prostate-specific membrane antigen(PSMA) in complex with a inhibitor Glu-490

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3D7D | pdb_00003d7d

3D7F | pdb_00003d7f

3D7G | pdb_00003d7g

3D7H | pdb_00003d7h

3IWW | pdb_00003iww

4OC0 | pdb_00004oc0

4OC1 | pdb_00004oc1

4OC2 | pdb_00004oc2

4OC3 | pdb_00004oc3

4OC4 | pdb_00004oc4

4OC5 | pdb_00004oc5

5DEX | pdb_00005dex

5VIH | pdb_00005vih

5VII | pdb_00005vii

5VIJ | pdb_00005vij

6RBC | pdb_00006rbc

6S1X | pdb_00006s1x

7BFZ | pdb_00007bfz