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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Trejo, A."

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Search Summary

This query matches 49 Structures.

Refinements

Structure Determination Methodology

experimental (49)

Scientific Name of Source Organism

	Homo sapiens (38)
	Severe acute respiratory syndrome coronavirus 2 (7)
	Klebsiella pneumoniae (3)
	Pseudomonas aeruginosa (1)

Taxonomy

	Eukaryota (38)
	Riboviria (7)
	Bacteria (4)

Experimental Method

X-RAY DIFFRACTION (49)

Polymer Entity Type

Protein (49)

Refinement Resolution (Å)

	1.0 - 1.5 (8)
	1.5 - 2.0 (11)
	2.0 - 2.5 (21)
	2.5 - 3.0 (9)

Release Date

	2010 - 2014 (2)
	2015 - 2019 (12)
	2020 - 2024 (32)
	2025 - 2029 (3)

Enzyme Classification Name

	Hydrolases (30)
	Transferases (11)

Symmetry Type

	Asymmetric (36)
	Cyclic (13)

SCOP Classification

	Alpha and beta proteins (a/b) (12)
	Artifacts (12)
	Alpha and beta proteins (a+b) (9)
	All alpha proteins (5)
	All beta proteins (2)

AllSelected

1 to 25 of 49 Structures

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4CT1 \| pdb_00004ct1	Download File View File

Human PDK1-PKCzeta Kinase Chimera in Complex with Allosteric Compound PS315 Bound to the PIF-Pocket

Schulze, J.O., Zhang, H., Lopez-Garcia, L.A., Biondi, R.M.

(2014) Chem Biol 21: 754

Released	2014-05-28
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1 (protein)
Unique Ligands	31S, ATP, DMS, DTD

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4CT2 \| pdb_00004ct2	Download File View File

Human PDK1-PKCzeta Kinase Chimera

Schulze, J.O., Zhang, H., Lopez-Garcia, L.A., Biondi, R.M.

(2014) Chem Biol 21: 754

Released	2014-05-28
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Homo sapiens
Macromolecule	3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1 (protein)
Unique Ligands	ATP, DTD, NA

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5A5Z \| pdb_00005a5z	Download File View File

Approved Drugs Containing Thiols as Inhibitors of Metallo-beta- lactamases: Strategy To Combat Multidrug-Resistant Bacteria

Klingler, F.M., Wichelhaus, T.A., Frank, D., Cuesta-Bernal, J., El-Delik, J., Mueller, H.F., Sjuts, H., Goettig, S., Koenigs, A., Pogoryelov, D., Proschak, E.

(2015) J Med Chem 58: 3626-3630

Released	2015-07-08
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Klebsiella pneumoniae
Macromolecule	BETA-LACTAMASE NDM-1 (protein)
Unique Ligands	WJZ, ZN

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5AEN \| pdb_00005aen	Download File View File

Structure of human Leukotriene A4 hydrolase in complex with inhibitor dimethyl(2- (4-phenoxyphenoxy)ethyl)amine

Moser, D., Wittmann, S.K., Kramer, J., Blocher, R., Achenbach, J., Pogoryelov, D., Proschak, E.

(2015) J Chem Inf Model 55: 284

Released	2015-02-11
Method	X-RAY DIFFRACTION 1.864 Å
Organisms	Homo sapiens
Macromolecule	LEUKOTRIENE A-4 HYDROLASE (protein)
Unique Ligands	DP8, IMD, YB, ZN

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5FWQ \| pdb_00005fwq	Download File View File

Apo structure of human Leukotriene A4 hydrolase

Wittmann, S.K., Kalinowsky, L., Kramer, J., Bloecher, R., Steinhilber, D., Pogoryelov, D., Proschak, E., Heering, J.

(2016) Bioorg Med Chem 24: 5243-5248

Released	2016-10-05
Method	X-RAY DIFFRACTION 2.047 Å
Organisms	Homo sapiens
Macromolecule	HUMAN LEUKOTRIENE A4 HYDROLASE (protein)
Unique Ligands	ACT, IMD, YB, ZN

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5MWA \| pdb_00005mwa	Download File View File

human sEH Phosphatase in complex with 3-4-3,4-dichlorophenyl-5-phenyl-1,3-oxazol-2-yl-benzoic-acid

Kramer, J.S., Pogoryelov, D., Sorrell, F.J., Fox, N., Chaikuad, A., Knapp, S., Proschak, E.

(2019) J Med Chem

Released	2018-02-28
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Homo sapiens
Macromolecule	Bifunctional epoxide hydrolase 2 (protein)
Unique Ligands	8S9, MG

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5NBK \| pdb_00005nbk	Download File View File

NDM-1 metallo-beta-lactamase: a parsimonious interpretation of the diffraction data

Raczynska, J.E., Shabalin, I.G., Jaskolski, M., Minor, W., Wlodawer, A.

(2018) Drug Resist Updat 40: 1-12

Released	2018-10-03
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Metallo-beta-lactamase type 2 (protein)
Unique Ligands	CL, P6G, PG4, ZN

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5O7N \| pdb_00005o7n	Download File View File

Beta-lactamase VIM-2 in complex with (2R)-1-(2-Benzyl-3-mercaptopropanoyl)piperidine-2-carboxylic acid

Buettner, D., Kramer, J.S., Pogoryelov, D., Proschak, E.

(2018) ACS Infect Dis 4: 360-372

Released	2018-06-20
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Beta-lactamase VIM-2 (protein)
Unique Ligands	9NK, EDO, FMT, ZN

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6F8B \| pdb_00006f8b	Download File View File

LasB bound to thiol based inhibitor

Koehnke, J., Sikandar, A.

(2018) ACS Infect Dis 4: 988-997

Released	2018-03-28
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Elastase (protein)
Unique Ligands	CA, CXH, ZN

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6FR2 \| pdb_00006fr2	Download File View File

Soluble epoxide hydrolase in complex with LK864

Kramer, J.S., Pogoryelov, D., Krasavin, M., Proschak, E.

(2018) Bioorg Chem 80: 655-667

Released	2018-09-12
Method	X-RAY DIFFRACTION 2.262 Å
Organisms	Homo sapiens
Macromolecule	Bifunctional epoxide hydrolase 2 (protein)
Unique Ligands	E3N, MG

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6HGV \| pdb_00006hgv	Download File View File

Soluble epoxide hydrolase in complex with talinolol

Kramer, J.S., Pogoryelov, D., Hiesinger, K., Proschak, E.

(2019) ACS Med Chem Lett 10: 899-903

Released	2019-07-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Bifunctional epoxide hydrolase 2 (protein)
Unique Ligands	G3Q, MG

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6HGW \| pdb_00006hgw	Download File View File

Soluble epoxide hydrolase in complex with 2-(4-fluorophenyl)-N-(4-phenoxybenzyl)ethanamine

Kramer, J.S., Pogoryelov, D., Hiesinger, K., Proschak, E.

To be published

Released	2019-08-07
Method	X-RAY DIFFRACTION 2.407 Å
Organisms	Homo sapiens
Macromolecule	Bifunctional epoxide hydrolase 2 (protein)
Unique Ligands	G3W

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6HGX \| pdb_00006hgx	Download File View File

Soluble epoxide hydrolase in complex with 1-(4-((4-(tert-butyl)morpholin-2-yl)methoxy)phenyl)-3-cyclohexylurea

Kramer, J.S., Pogoryelov, D., Hiesinger, K., Proschak, E.

(2019) ACS Med Chem Lett 10: 899-903

Released	2019-07-03
Method	X-RAY DIFFRACTION 2.16 Å
Organisms	Homo sapiens
Macromolecule	Bifunctional epoxide hydrolase 2 (protein)
Unique Ligands	G3T, MG

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6T6B \| pdb_00006t6b	Download File View File

Crystal structure of PPARgamma in complex with compound 16 (MF27)

Chaikuad, A., Ni, X., Hanke, T., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Merk, D., Knapp, S., Structural Genomics Consortium (SGC)

(2020) J Med Chem 63: 4555-4561

Released	2019-12-11
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	MLQ

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6TBE \| pdb_00006tbe	Download File View File

LC3A in complex with (3R,4S,5R,6R)-5-hydroxy-6-((4-hydroxy-3-(4-hydroxy-3-isopentylbenzamido)-8-methyl-2-oxo-2H-chromen-7-yl)oxy)-3-methoxy-2,2-dimethyltetrahydro-2H-pyran-4-yl carbamate

Kramer, J.S., Pogoryelov, D., Hartmann, M., Chaikuad, A., Proschak, E.

(2021) J Med Chem 64: 3720-3746

Released	2020-11-18
Method	X-RAY DIFFRACTION 1.67008040045 Å
Organisms	Homo sapiens
Macromolecule	Microtubule-associated proteins 1A/1B light chain 3A (protein)
Unique Ligands	EDO, NOV

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6TSG \| pdb_00006tsg	Download File View File

Crystal structure of Peroxisome proliferator-activated receptor gamma (PPARG) in complex with TETRAC

Chaikuad, A., Gellrich, L., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Merk, D., Knapp, S., Structural Genomics Consortium (SGC)

(2020) J Med Chem 63: 6727-6740

Released	2020-07-22
Method	X-RAY DIFFRACTION 2.98 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	T4A

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6Y3U \| pdb_00006y3u	Download File View File

Crystal structure of PPARgamma in complex with compound (R)-16

Chaikuad, A., Hanke, T., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Merk, D., Knapp, S., Structural Genomics Consortium (SGC)

(2020) J Med Chem 63: 4555-4561

Released	2020-04-22
Method	X-RAY DIFFRACTION 2.62 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	MLQ

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6YL4 \| pdb_00006yl4	Download File View File

Soluble epoxide hydrolase in complex with 3-((R)-3-(1-hydroxyureido)but-1-yn-1-yl)-N-((S)-3-phenyl-3-(4-trifluoromethoxy)phenyl)propyl)benzamide

Kramer, J.S., Pogoryelov, D., Hiesinger, K., Proschak, E.

(2020) J Med Chem 63: 11498-11521

Released	2020-10-21
Method	X-RAY DIFFRACTION 2.001 Å
Organisms	Homo sapiens
Macromolecule	Bifunctional epoxide hydrolase 2 (protein)
Unique Ligands	OWW

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6YWK \| pdb_00006ywk	Download File View File

Crystal structure of SARS-CoV-2 (Covid-19) NSP3 macrodomain in complex with HEPES

Ni, X., Schroeder, M., Olieric, V., Sharpe, E.M., Wojdyla, J.A., Wang, M., Knapp, S., Chaikuad, A., Structural Genomics Consortium (SGC)

(2021) ACS Med Chem Lett 12: 603-609

Released	2020-05-06
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	NSP3 macrodomain (protein)
Unique Ligands	EDO, EPE, MG

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6YWL \| pdb_00006ywl	Download File View File

Crystal structure of SARS-CoV-2 (Covid-19) NSP3 macrodomain in complex with ADP-ribose

Schroeder, M., Ni, X., Olieric, V., Sharpe, E.M., Wojdyla, J.A., Wang, M., Knapp, S., Chaikuad, A., Structural Genomics Consortium (SGC)

(2021) ACS Med Chem Lett 12: 603-609

Released	2020-05-06
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	NSP3 macrodomain (protein)
Unique Ligands	APR, EDO, MG

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6YWM \| pdb_00006ywm	Download File View File

Crystal structure of SARS-CoV-2 (Covid-19) NSP3 macrodomain in complex with MES

Ni, X., Schroeder, M., Olieric, V., Sharpe, E.M., Wojdyla, J.A., Wang, M., Knapp, S., Chaikuad, A., Structural Genomics Consortium (SGC)

(2021) ACS Med Chem Lett 12: 603-609

Released	2020-05-06
Method	X-RAY DIFFRACTION 2.16 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	NSP3 macrodomain (protein)
Unique Ligands	EDO, MES, MG

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7A7G \| pdb_00007a7g	Download File View File

Soluble epoxide hydrolase in complex with TK90

Ni, X., Kramer, J.S., Kirchner, T., Proschak, E., Chaikuad, A., Knapp, S., Structural Genomics Consortium (SGC)

(2021) J Med Chem 64: 2815-2828

Released	2021-08-04
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Bifunctional epoxide hydrolase 2 (protein)
Unique Ligands	TK9

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7A7H \| pdb_00007a7h	Download File View File

Crystal structure of PPARgamma in complex with compound TK90

Ni, X., Kirchner, T., Proschak, E., Chaikuad, A., Knapp, S., Structural Genomics Consortium (SGC)

(2021) J Med Chem 64: 2815-2828

Released	2021-08-04
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	EDO, TK9

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7B88 \| pdb_00007b88	Download File View File

Crystal structure of Retinoic Acid Receptor alpha (RXRA) in complexed with S99 inhibitor

Chaikuad, A., Schierle, S., Merk, D., Knapp, S., Structural Genomics Consortium (SGC)

(2021) J Med Chem 64: 5123-5136

Released	2021-01-13
Method	X-RAY DIFFRACTION 2.38 Å
Organisms	Homo sapiens
Macromolecule	Nuclear receptor coactivator 2 (protein) Retinoic acid receptor RXR-alpha (protein)
Unique Ligands	T2K

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7B9O \| pdb_00007b9o	Download File View File

Crystal structure of Retinoic Acid Receptor alpha (RXRA) in complexed with S169 inhibitor

Ni, X., Chaikuad, A., Schierle, S., Merk, D., Knapp, S., Structural Genomics Consortium (SGC)

(2021) J Med Chem 64: 5123-5136

Released	2021-02-10
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens
Macromolecule	Nuclear receptor coactivator 2 (protein) Retinoic acid receptor RXR-alpha (protein)
Unique Ligands	T72

1 to 25 of 49 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

4CT1 | pdb_00004ct1

4CT2 | pdb_00004ct2

5A5Z | pdb_00005a5z

5AEN | pdb_00005aen

5FWQ | pdb_00005fwq

5MWA | pdb_00005mwa

5NBK | pdb_00005nbk

5O7N | pdb_00005o7n

6F8B | pdb_00006f8b

6FR2 | pdb_00006fr2

6HGV | pdb_00006hgv

6HGW | pdb_00006hgw

6HGX | pdb_00006hgx

6T6B | pdb_00006t6b

6TBE | pdb_00006tbe

6TSG | pdb_00006tsg

6Y3U | pdb_00006y3u

6YL4 | pdb_00006yl4

6YWK | pdb_00006ywk

6YWL | pdb_00006ywl

6YWM | pdb_00006ywm

7A7G | pdb_00007a7g

7A7H | pdb_00007a7h

7B88 | pdb_00007b88

7B9O | pdb_00007b9o