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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Srikannathasan, V."

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Search Summary

This query matches 39 Structures.

Refinements

Structure Determination Methodology

experimental (39)

Scientific Name of Source Organism

	Homo sapiens (24)
	Staphylococcus aureus subsp. aureus N315 (6)
	Rattus norvegicus (5)
	Staphylococcus aureus (2)
	Bos taurus (1)
	Dubowvirus dv11 (1)

Taxonomy

	Eukaryota (30)
	Bacteria (8)
	Duplodnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (38)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (39)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (10)
	2.0 - 2.5 (21)
	2.5 - 3.0 (4)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (1)
	2005 - 2009 (2)
	2010 - 2014 (16)
	2015 - 2019 (16)
	2020 - 2024 (3)

Enzyme Classification Name

	Transferases (9)
	Oxidoreductases (6)
	Hydrolases (3)

Symmetry Type

	Cyclic (28)
	Asymmetric (11)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (10)
	Artifacts (4)
	All alpha proteins (4)

AllSelected

1 to 25 of 39 Structures

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1NDD \| pdb_00001ndd	Download File View File

STRUCTURE OF NEDD8

Whitby, F.G., Xia, G., Pickart, C.M., Hill, C.P.

(1998) J Biological Chem 273: 34983-34991

Released	1999-02-23
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (UBIQUITIN-LIKE PROTEIN NEDD8) (protein)
Unique Ligands	CL, SO4

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1S2H \| pdb_00001s2h	Download File View File

The Mad2 spindle checkpoint protein possesses two distinct natively folded states

Luo, X., Tang, Z., Xia, G., Wassmann, K., Matsumoto, T., Rizo, J., Yu, H.

(2004) Nat Struct Mol Biol 11: 338-345

Released	2004-03-30
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Mitotic spindle assembly checkpoint protein MAD2A (protein)

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2HIW \| pdb_00002hiw	Download File View File

Crystal Structure of Inactive Conformation Abl Kinase Catalytic Domain Complexed with Type II Inhibitor

Lee, C.

(2006) Chem Biol 13: 779-786

Released	2006-08-22
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Proto-oncogene tyrosine-protein kinase ABL1 (protein)
Unique Ligands	7MP

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2QYF \| pdb_00002qyf	Download File View File

Crystal structure of the Mad2/p31(comet)/Mad2-binding peptide ternary complex

Tomchick, D.R., Luo, X.

(2007) Cell 131: 744-755

Released	2008-01-29
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	MAD2L1-binding protein (protein) Mitotic spindle assembly checkpoint protein MAD2A (protein) peptide (protein)

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3OAP \| pdb_00003oap	Download File View File

Crystal structure of human Retinoid X Receptor alpha-ligand binding domain complex with 9-cis retinoic acid and the coactivator peptide GRIP-1

Xia, G., Smith, C.D., Muccio, D.D.

(2011) Biochemistry 50: 93-105

Released	2010-11-17
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens
Macromolecule	Nuclear receptor coactivator 2 (protein) Retinoic acid receptor RXR-alpha (protein)
Unique Ligands	9CR

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3PNE \| pdb_00003pne	Download File View File

Structure of rat neuronal nitric oxide synthase heme domain in complex with 6-(((3R,4R)-4-(2-((2,2-Difluoro-2-(3-chlorophenyl)ethyl)amino)ethoxy)pyrrolidin-3-yl)methyl)-4-methylpyridin-2-amine

Li, H., Delker, S., Poulos, T.L.

(2011) J Med Chem 54: 6399-6403

Released	2011-11-02
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Rattus norvegicus
Macromolecule	Nitric oxide synthase, brain (protein)
Unique Ligands	8AX, ACT, H4B, HEM, ZN

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3PNF \| pdb_00003pnf	Download File View File

Structure of rat neuronal nitric oxide synthase heme domain in complex with 6-(((3R,4R)-4-(2-((2,2-Difluoro-2-(2-chlorophenyl)ethyl)amino)ethoxy)pyrrolidin-3-yl)methyl)-4-methylpyridin-2-amine

Li, H., Delker, S., Poulos, T.L.

(2011) J Med Chem 54: 6399-6403

Released	2011-11-02
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Rattus norvegicus
Macromolecule	Nitric oxide synthase, brain (protein)
Unique Ligands	8BX, ACT, H4B, HEM, ZN

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3PNG \| pdb_00003png	Download File View File

Structure of rat neuronal nitric oxide synthase heme domain in complex with 6-(((3R,4R)-4-(2-((2-fluoro-2-(3-fluorophenyl)ethyl)amino)ethoxy)pyrrolidin-3-yl)methyl)-4-methylpyridin-2-amine

Li, H., Delker, S., Poulos, T.L.

(2011) J Med Chem 54: 6399-6403

Released	2011-10-05
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Rattus norvegicus
Macromolecule	Nitric oxide synthase, brain (protein)
Unique Ligands	8CX, ACT, H4B, HEM, ZN

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3PNH \| pdb_00003pnh	Download File View File

Structure of Bovine Endothelial Nitric Oxide Synthase Heme Domain in complex with 6-(((3R,4R)-4-(2-((2-FLUORO-2-(3-FLUOROPHENYL) ETHYL)AMINO)ETHOXY)PYRROLIDIN-3-YL)METHYL)-4-METHYLPYRIDIN-2-AMINE

Delker, S.L., Li, H., Poulos, T.L.

(2011) J Med Chem 54: 6399-6403

Released	2011-10-05
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Bos taurus
Macromolecule	Nitric oxide synthase, endothelial (protein)
Unique Ligands	8CX, ACT, CAD, GOL, H4B, HEM, ZN

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3SVP \| pdb_00003svp	Download File View File

Structure of rat neuronal nitric oxide synthase heme domain in complex with 6-(((3R,4R)-4-(2-((2,2-Difluoro-2-(3-chloro-5-fluorophenyl)ethyl)amino)ethoxy)pyrrolidin-3-yl)methyl)-4-methylpyridin-2-amine

Li, H., Poulos, T.L.

(2011) J Med Chem 54: 6399-6403

Released	2011-09-28
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Rattus norvegicus
Macromolecule	Nitric oxide synthase, brain (protein)
Unique Ligands	ACT, H4B, HEM, JK5, ZN

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3SVQ \| pdb_00003svq	Download File View File

Structure of rat neuronal nitric oxide synthase heme domain in complex with 6-(((3R,4R)-4-(2-((2,2-Difluoro-2-(2,3-difluorophenyl)ethyl)amino)ethoxy)pyrrolidin-3-yl)methyl)-4-methylpyridin-2-amine

Li, H., Poulos, T.L.

(2011) J Med Chem 54: 6399-6403

Released	2011-09-28
Method	X-RAY DIFFRACTION 2.18 Å
Organisms	Rattus norvegicus
Macromolecule	Nitric oxide synthase, brain (protein)
Unique Ligands	ACT, H4B, HEM, JK4, ZN

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4DZO \| pdb_00004dzo	Download File View File

Structure of Human Mad1 C-terminal Domain Reveals Its Involvement in Kinetochore Targeting

Luo, X., Sun, H., Tomchick, D.R.

(2012) Proc Natl Acad Sci U S A 109: 6549-6554

Released	2012-04-11
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Homo sapiens
Macromolecule	Mitotic spindle assembly checkpoint protein MAD1 (protein)

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4K4J \| pdb_00004k4j	Download File View File

Crystal structure of human Retinoid X Receptor alpha-ligand binding domain complex with 9cUAB30 and the coactivator peptide GRIP-1

Xia, G., Smith, C.D., Muccio, D.D.

(2014) J Biological Chem 289: 814-826

Released	2013-11-13
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Nuclear receptor coactivator 2 peptide (protein) Retinoic acid receptor RXR-alpha (protein)
Unique Ligands	1O8

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4K6I \| pdb_00004k6i	Download File View File

Crystal structure of human retinoid X receptor alpha-ligand binding domain complex with Targretin and the coactivator peptide GRIP-1

Xia, G., Smith, C.D., Muccio, D.D.

(2014) J Biological Chem 289: 814-826

Released	2013-11-13
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Nuclear receptor coactivator 2 (protein) Retinoic acid receptor RXR-alpha (protein)
Unique Ligands	9RA

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4M8E \| pdb_00004m8e	Download File View File

CRYSTAL STRUCTURE OF HUMAN RETINOID X RECEPTOR ALPHA-LIGAND BINDING DOMAIN COMPLEX WITH (S) 4-Methyl 9cUAB30 COACTIVATOR PEPTIDE GRIP-1

Xia, G., Smith, C.D., Muccio, D.D.

(2014) Bioorg Med Chem 22: 178-185

Released	2014-01-22
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Nuclear receptor coactivator 2 (protein) Retinoic acid receptor RXR-alpha (protein)
Unique Ligands	29V

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4M8H \| pdb_00004m8h	Download File View File

CRYSTAL STRUCTURE OF HUMAN RETINOID X RECEPTOR ALPHA-LIGAND BINDING DOMAIN COMPLEX WITH (R)4-METHYL 9cUAB30 AND COACTIVATOR PEPTIDE GRIP-1

Xia, G., Smith, C.D., Muccio, D.D.

(2014) Bioorg Med Chem 22: 178-185

Released	2014-01-22
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Nuclear receptor coactivator 2 (protein) Retinoic acid receptor RXR-alpha (protein)
Unique Ligands	R4M

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4POH \| pdb_00004poh	Download File View File

Crystal structure of human Retinoid X Receptor alpha-ligand binding domain complex with 8-methyl UAB30 and the coactivator peptide GRIP-1

Xia, G., Smith, C.D., Muccio, D.D.

(2014) J Med Chem 57: 5370-5380

Released	2014-06-18
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Nuclear receptor coactivator 2 (protein) Retinoic acid receptor RXR-alpha (protein)
Unique Ligands	2VR

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4POJ \| pdb_00004poj	Download File View File

Crystal structure of human Retinoid X Receptor alpha-ligand binding domain complex with 7-methyl UAB30 and the coactivator peptide GRIP-1

Xia, G., Smith, C.D., Muccio, D.D.

(2014) J Med Chem 57: 5370-5380

Released	2014-06-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Nuclear receptor coactivator 2 (protein) Retinoic acid receptor RXR-alpha (protein)
Unique Ligands	2VP

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4PP3 \| pdb_00004pp3	Download File View File

Crystal structure of human Retinoid X Receptor alpha-ligand binding domain complex with 6-methyl UAB30 and the coactivator peptide GRIP-1

Xia, G., Smith, C.D., Muccio, D.D.

(2014) J Med Chem 57: 5370-5380

Released	2014-06-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Nuclear receptor coactivator 2 (protein) Retinoic acid receptor RXR-alpha (protein)
Unique Ligands	2VZ

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4PP5 \| pdb_00004pp5	Download File View File

Crystal structure of human Retinoid X Receptor alpha-ligand binding domain complex with 5-methyl UAB30 and the coactivator peptide GRIP-1

Xia, G., Smith, C.D., Muccio, D.D.

(2014) J Med Chem 57: 5370-5380

Released	2014-06-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Nuclear receptor coactivator 2 (protein) Retinoic acid receptor RXR-alpha (protein)
Unique Ligands	2W0

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4QR3 \| pdb_00004qr3	Download File View File

Brd4 Bromodomain 1 complex with its novel inhibitors

Xiong, B., Cao, D.Y., Chen, T.T., Xu, Y.C.

(2015) J Med Chem 58: 1281-1297

Released	2015-07-01
Method	X-RAY DIFFRACTION 1.374 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein)
Unique Ligands	BNJ

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4QR4 \| pdb_00004qr4	Download File View File

Brd4 Bromodomain 1 complex with its novel inhibitors

Xiong, B., Cao, D.Y., Chen, T.T., Xu, Y.C.

(2015) J Med Chem 58: 1281-1297

Released	2015-07-01
Method	X-RAY DIFFRACTION 1.28 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein)
Unique Ligands	BNK

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4QR5 \| pdb_00004qr5	Download File View File

Brd4 Bromodomain 1 complex with its novel inhibitors

Xiong, B., Cao, D.Y., Chen, T.T., Xu, Y.C.

(2015) J Med Chem 58: 1281-1297

Released	2015-07-01
Method	X-RAY DIFFRACTION 1.41 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein)
Unique Ligands	BNM

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4RFW \| pdb_00004rfw	Download File View File

Crystal structure of human retinoid X Receptor alpha-ligand binding domain complex with 9cUAB70 and the coactivator peptide GRIP-1

Xia, G., Muccio, D.D., Smith, C.D.

(2015) J Med Chem 58: 7763-7774

Released	2015-09-16
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Nuclear receptor coactivator 2 (protein) Retinoic acid receptor RXR-alpha (protein)
Unique Ligands	3RB

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4RMC \| pdb_00004rmc	Download File View File

Crystal Structure of human retinoid X receptor alpha-ligand binding domain complex with 9cUAB76 and the coactivator peptide GRIP-1

Xia, G., Muccio, D.D.

(2015) J Med Chem 58: 7763-7774

Released	2015-09-16
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Nuclear receptor coactivator 2 (protein) Retinoic acid receptor RXR-alpha (protein)
Unique Ligands	3SV

1 to 25 of 39 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1NDD | pdb_00001ndd

1S2H | pdb_00001s2h

2HIW | pdb_00002hiw

2QYF | pdb_00002qyf

3OAP | pdb_00003oap

3PNE | pdb_00003pne

3PNF | pdb_00003pnf

3PNG | pdb_00003png

3PNH | pdb_00003pnh

3SVP | pdb_00003svp

3SVQ | pdb_00003svq

4DZO | pdb_00004dzo

4K4J | pdb_00004k4j

4K6I | pdb_00004k6i

4M8E | pdb_00004m8e

4M8H | pdb_00004m8h

4POH | pdb_00004poh

4POJ | pdb_00004poj

4PP3 | pdb_00004pp3

4PP5 | pdb_00004pp5

4QR3 | pdb_00004qr3

4QR4 | pdb_00004qr4

4QR5 | pdb_00004qr5

4RFW | pdb_00004rfw

4RMC | pdb_00004rmc