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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Shroyer, M.J."

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Search Summary

This query matches 14 Structures.

Refinements

Structure Determination Methodology

experimental (14)

Scientific Name of Source Organism

	Homo sapiens (8)
	Pseudomonas putida KT2440 (3)
	Saccharomyces cerevisiae S288C (3)
	synthetic construct (3)

Taxonomy

	Eukaryota (11)
	Bacteria (3)
	other sequences (3)

Experimental Method

X-RAY DIFFRACTION (14)

Polymer Entity Type

Protein (14)

Refinement Resolution (Å)

	1.5 - 2.0 (3)
	2.0 - 2.5 (6)
	2.5 - 3.0 (5)

Release Date

	2010 - 2014 (12)
	2015 - 2019 (1)
	2020 - 2024 (1)

Enzyme Classification Name

Oxidoreductases (11)

Symmetry Type

	Asymmetric (11)
	Cyclic (4)

SCOP Classification

	All beta proteins (4)
	Alpha and beta proteins (a/b) (2)
	Artifacts (1)

AllSelected

1 to 14 of 14 Structures

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4B7E \| pdb_00004b7e	Download File View File

FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH CONSENSUS ANKYRIN REPEAT DOMAIN-LEU PEPTIDE (20-MER)

Chowdhury, R., Ge, W., Schofield, C.J.

(2013) Angew Chem Int Ed Engl 52: 1700-1704

Released	2013-01-23
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	CONSENSUS ANKYRIN REPEAT DOMAIN-LEU (protein) HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR (protein)
Unique Ligands	GOL, OGA, SO4, ZN

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4B7K \| pdb_00004b7k	Download File View File

FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH CONSENSUS ANKYRIN REPEAT DOMAIN-SER PEPTIDE (20-MER)

Chowdhury, R., Ge, W., Schofield, C.J.

(2013) Angew Chem Int Ed Engl 52: 1700-1704

Released	2013-01-23
Method	X-RAY DIFFRACTION 2.39 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	CONSENSUS ANKYRIN REPEAT DOMAIN-SER (protein) HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR (protein)
Unique Ligands	OGA, SO4, ZN

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4IW3 \| pdb_00004iw3	Download File View File

Crystal structure of a Pseudomonas putida prolyl-4-hydroxylase (P4H) in complex with elongation factor Tu (EF-Tu)

Scotti, J.S., McDonough, M.A., Schofield, C.J.

(2014) Proc Natl Acad Sci U S A 111: 13331-13336

Released	2014-01-29
Method	X-RAY DIFFRACTION 2.697 Å
Organisms	Pseudomonas putida KT2440
Macromolecule	Elongation factor Tu-A (protein) Putative uncharacterized protein (protein)
Unique Ligands	GDP, MG, MN, OGA

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4J0Q \| pdb_00004j0q	Download File View File

Crystal structure of Pseudomonas putida elongation factor Tu (EF-Tu)

Scotti, J.S., McDonough, M.A., Schofield, C.J.

(2014) Proc Natl Acad Sci U S A 111: 13331-13336

Released	2014-02-05
Method	X-RAY DIFFRACTION 2.294 Å
Organisms	Pseudomonas putida KT2440
Macromolecule	Elongation factor Tu-A (protein)
Unique Ligands	GDP, MES, MG, MPD

Explore in 3D

4J25 \| pdb_00004j25	Download File View File

Crystal structure of a Pseudomonas putida prolyl-4-hydroxylase (P4H)

Scotti, J.S., McDonough, M.A., Schofield, C.J.

(2014) Proc Natl Acad Sci U S A 111: 13331-13336

Released	2014-02-05
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Pseudomonas putida KT2440
Macromolecule	Putative uncharacterized protein (protein)
Unique Ligands	MN, OGA

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4JAA \| pdb_00004jaa	Download File View File

Factor inhibiting HIF-1 alpha in complex with consensus ankyrin repeat domain-(d)LEU peptide

Scotti, J.S., Ge, W., McDonough, M.A., Schofield, C.J.

To be published

Released	2014-02-19
Method	X-RAY DIFFRACTION 2.39 Å
Organisms	Homo sapiens
Macromolecule	CONSENSUS ANKYRIN REPEAT DOMAIN-(d)LEU (protein) Hypoxia-inducible factor 1-alpha inhibitor (protein)
Unique Ligands	OGA, SO4, ZN

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4NHK \| pdb_00004nhk	Download File View File

Crystal structure of Tpa1p from Saccharomyces cerevisiae, termination and polyadenylation protein 1, in complex with pyridine-2,4-dicarboxylic acid (2,4-PDCA)

Scotti, J.S., McDonough, M.A., Schofield, C.J.

(2015) Structure 23: 639-652

Released	2014-11-19
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	PKHD-type hydroxylase TPA1 (protein)
Unique Ligands	GOL, MN, PD2

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4NHL \| pdb_00004nhl	Download File View File

Crystal structure of Tpa1p from Saccharomyces cerevisiae, termination and polyadenylation protein 1, in complex with N-oxalylglycine (NOG)

Scotti, J.S., McDonough, M.A., Schofield, C.J.

(2015) Structure 23: 639-652

Released	2014-11-19
Method	X-RAY DIFFRACTION 2.84 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	PKHD-type hydroxylase TPA1 (protein)
Unique Ligands	MN, OGA

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4NHM \| pdb_00004nhm	Download File View File

Crystal structure of Tpa1p from Saccharomyces cerevisiae, termination and polyadenylation protein 1, in complex with N-[(1-chloro-4-hydroxyisoquinolin-3-yl)carbonyl]glycine (IOX3/UN9)

Scotti, J.S., McDonough, M.A., Schofield, C.J.

(2015) Structure 23: 639-652

Released	2014-11-19
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	PKHD-type hydroxylase TPA1 (protein)
Unique Ligands	GOL, MN, UN9

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4NHX \| pdb_00004nhx	Download File View File

Crystal structure of human OGFOD1, 2-oxoglutarate and iron-dependent oxygenase domain containing 1, in complex with N-oxalylglycine (NOG)

Horita, S., McDonough, M.A., Schofield, C.J.

(2015) Structure 23: 639-652

Released	2014-11-19
Method	X-RAY DIFFRACTION 2.105 Å
Organisms	Homo sapiens
Macromolecule	2-oxoglutarate and iron-dependent oxygenase domain-containing protein 1 (protein)
Unique Ligands	GOL, MN, NA, OGA

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4NHY \| pdb_00004nhy	Download File View File

Crystal structure of human OGFOD1, 2-oxoglutarate and iron-dependent oxygenase domain containing 1, in complex with pyridine-2,4-dicarboxylic acid (2,4-PDCA)

Horita, S., McDonough, M.A., Schofield, C.J.

(2015) Structure 23: 639-652

Released	2014-11-19
Method	X-RAY DIFFRACTION 2.603 Å
Organisms	Homo sapiens
Macromolecule	2-oxoglutarate and iron-dependent oxygenase domain-containing protein 1 (protein)
Unique Ligands	GOL, MN, PD2

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4NJ4 \| pdb_00004nj4	Download File View File

Crystal Structure of Human ALKBH5

Aik, W.S., McDonough, M.A., Schofield, C.J.

(2014) Nucleic Acids Res 42: 4741-4754

Released	2014-01-15
Method	X-RAY DIFFRACTION 2.02 Å
Organisms	Homo sapiens
Macromolecule	RNA demethylase ALKBH5 (protein)
Unique Ligands	GOL, MN, NO3, UN9

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4NR1 \| pdb_00004nr1	Download File View File

Factor inhibiting HIF-1 alpha in complex with consensus ankyrin repeat domain-(d)allyl-GLY peptide

Scotti, J.S., McDonough, M.A., Schofield, C.J.

To be published

Released	2015-01-21
Method	X-RAY DIFFRACTION 2.68 Å
Organisms	Homo sapiens
Macromolecule	CONSENSUS ANKYRIN REPEAT DOMAIN-(D)allyl glycine (protein) Hypoxia-inducible factor 1-alpha inhibitor (protein)
Unique Ligands	OGA, SO4, ZN

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6RUJ \| pdb_00006ruj	Download File View File

Factor inhibiting HIF-1 alpha in complex with consensus ankyrin repeat domain-(d)3-hydroxy-Leu peptide

Nakashima, Y., McDonough, M.A., Schofield, C.J.

(2020) Commun Chem

Released	2020-07-08
Method	X-RAY DIFFRACTION 2.42 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	CONSENSUS ANKYRIN REPEAT DOMAIN-(D)3-hydroxy-Leu (protein) Hypoxia-inducible factor 1-alpha inhibitor (protein)
Unique Ligands	OGA, SO4, ZN

1 to 14 of 14 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

4B7E | pdb_00004b7e

FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH CONSENSUS ANKYRIN REPEAT DOMAIN-LEU PEPTIDE (20-MER)

4B7K | pdb_00004b7k

FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH CONSENSUS ANKYRIN REPEAT DOMAIN-SER PEPTIDE (20-MER)

4IW3 | pdb_00004iw3

Crystal structure of a Pseudomonas putida prolyl-4-hydroxylase (P4H) in complex with elongation factor Tu (EF-Tu)

4J0Q | pdb_00004j0q

Crystal structure of Pseudomonas putida elongation factor Tu (EF-Tu)

4J25 | pdb_00004j25

Crystal structure of a Pseudomonas putida prolyl-4-hydroxylase (P4H)

4JAA | pdb_00004jaa

Factor inhibiting HIF-1 alpha in complex with consensus ankyrin repeat domain-(d)LEU peptide

4NHK | pdb_00004nhk

Crystal structure of Tpa1p from Saccharomyces cerevisiae, termination and polyadenylation protein 1, in complex with pyridine-2,4-dicarboxylic acid (2,4-PDCA)

4NHL | pdb_00004nhl

Crystal structure of Tpa1p from Saccharomyces cerevisiae, termination and polyadenylation protein 1, in complex with N-oxalylglycine (NOG)

4NHM | pdb_00004nhm

Crystal structure of Tpa1p from Saccharomyces cerevisiae, termination and polyadenylation protein 1, in complex with N-[(1-chloro-4-hydroxyisoquinolin-3-yl)carbonyl]glycine (IOX3/UN9)

4NHX | pdb_00004nhx

Crystal structure of human OGFOD1, 2-oxoglutarate and iron-dependent oxygenase domain containing 1, in complex with N-oxalylglycine (NOG)

4NHY | pdb_00004nhy

Crystal structure of human OGFOD1, 2-oxoglutarate and iron-dependent oxygenase domain containing 1, in complex with pyridine-2,4-dicarboxylic acid (2,4-PDCA)

4NJ4 | pdb_00004nj4

Crystal Structure of Human ALKBH5

4NR1 | pdb_00004nr1

Factor inhibiting HIF-1 alpha in complex with consensus ankyrin repeat domain-(d)allyl-GLY peptide

6RUJ | pdb_00006ruj

Factor inhibiting HIF-1 alpha in complex with consensus ankyrin repeat domain-(d)3-hydroxy-Leu peptide

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

4B7E | pdb_00004b7e

4B7K | pdb_00004b7k

4IW3 | pdb_00004iw3

4J0Q | pdb_00004j0q

4J25 | pdb_00004j25

4JAA | pdb_00004jaa

4NHK | pdb_00004nhk

4NHL | pdb_00004nhl

4NHM | pdb_00004nhm

4NHX | pdb_00004nhx

4NHY | pdb_00004nhy

4NJ4 | pdb_00004nj4

4NR1 | pdb_00004nr1

6RUJ | pdb_00006ruj