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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Poyraz, O."

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Search Summary

This query matches 14 Structures.

Refinements

Structure Determination Methodology

experimental (14)

Scientific Name of Source Organism

	Mycobacterium tuberculosis (8)
	Mycobacterium tuberculosis H37Rv (4)
	Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 (2)

Taxonomy

Bacteria (14)

Experimental Method

	X-RAY DIFFRACTION (13)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (14)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (4)
	2.0 - 2.5 (6)
	2.5 - 3.0 (2)

Release Date

	2010 - 2014 (6)
	2015 - 2019 (8)

Enzyme Classification Name

Transferases (12)

Symmetry Type

	Cyclic (11)
	Asymmetric (3)

SCOP Classification

	Alpha and beta proteins (a/b) (12)
	All alpha proteins (2)
	Artifacts (2)

AllSelected

1 to 14 of 14 Structures

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2KV7 \| pdb_00002kv7	Download File View File

NMR solution structure of a soluble PrgI mutant from Salmonella Typhimurium

Schmidt, H., Poyraz, O., Seidel, K., Delissen, F., Ader, C., Tenenboim, H., Goosmann, C., Laube, B., Thuenemann, A.F., Zychlinski, A., Baldus, M., Lange, A., Griesinger, C., Kolbe, M.

(2010) Nat Struct Mol Biol 17: 788-792

Released	2010-06-16
Method	SOLUTION NMR
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
Macromolecule	Protein prgI (protein)

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2X9C \| pdb_00002x9c	Download File View File

Crystal structure of a soluble PrgI mutant from Salmonella Typhimurium

Poyraz, O., Schmidt, H., Seidel, K., Delissen, F., Ader, C., Tenenboim, H., Goosmann, C., Laube, B., Thuenemann, A.F., Zychlinsky, A., Baldus, M., Lange, A., Griesinger, C., Kolbe, M.

(2010) Nat Struct Mol Biol 17: 788

Released	2010-06-16
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
Macromolecule	PROTEIN PRGI (protein)

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3ZEI \| pdb_00003zei	Download File View File

Structure of the Mycobacterium tuberculosis O-Acetylserine Sulfhydrylase (OASS) CysK1 in complex with a small molecule inhibitor

Poyraz, O., Schnell, R., Schneider, G.

(2013) J Med Chem 56: 6457

Released	2013-08-07
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	O-ACETYLSERINE SULFHYDRYLASE (protein)
Unique Ligands	AWH, MPD, PLP

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4BZP \| pdb_00004bzp	Download File View File

Structure of the Mycobacterium tuberculosis APS kinase CysC in complex with ADP

Poyraz, O., Lohkamp, B., Schnell, R., Schneider, G.

(2015) PLoS One 10: 21494

Released	2014-08-06
Method	X-RAY DIFFRACTION 1.47 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	BIFUNCTIONAL ENZYME CYSN/CYSC (protein)
Unique Ligands	ADP, EDO

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4BZQ \| pdb_00004bzq	Download File View File

Structure of the Mycobacterium tuberculosis APS kinase CysC in complex with ADP and APS

Poyraz, O., Schnell, R., Schneider, G.

(2015) PLoS One 10: 21494

Released	2014-08-13
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	BIFUNCTIONAL ENZYME CYSN/CYSC (protein)
Unique Ligands	ADP, ADX, CIT, EDO

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4BZX \| pdb_00004bzx	Download File View File

Structure of the Mycobacterium tuberculosis APS kinase CysC in complex with AMPPNP and APS

Poyraz, O., Lohkamp, B., Schnell, R., Schneider, G.

(2015) PLoS One 10: 21494

Released	2014-08-13
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	BIFUNCTIONAL ENZYME CYSN/CYSC (protein)
Unique Ligands	ADX, ANP, CIT, EDO, MG, PEG

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4RFV \| pdb_00004rfv	Download File View File

Structure of the Mycobacterium tuberculosis APS kinase CysC Cys556Ala mutant

Poyraz, O., Brunner, K., Schnell, R., Schneider, G.

(2015) PLoS One 10: e0121494-e0121494

Released	2015-01-28
Method	X-RAY DIFFRACTION 1.69 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Bifunctional enzyme CysN/CysC (protein)
Unique Ligands	PO4

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5I6D \| pdb_00005i6d	Download File View File

Mycobacterium tuberculosis CysM in complex with the Urea-scaffold inhibitor 5 [3-(3-(p-Tolyl)ureido) benzoic acid]

Schnell, R., Maric, S., Schneider, G.

(2016) J Med Chem 59: 6848-6859

Released	2016-08-17
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	O-phosphoserine sulfhydrylase (protein)
Unique Ligands	AU6, GOL, PLP

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5I7A \| pdb_00005i7a	Download File View File

Mycobacterium tuberculosis CysM in complex with the Urea-scaffold inhibitor 1 [3-(3-(3,4-Dichlorophenyl)ureido)benzoic acid]

Schnell, R., Maric, S., Schneider, G.

(2016) J Med Chem 59: 6848-6859

Released	2016-08-17
Method	X-RAY DIFFRACTION 2.08 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	O-phosphoserine sulfhydrylase (protein)
Unique Ligands	68Q, PLP

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5I7H \| pdb_00005i7h	Download File View File

Mycobacterium tuberculosis CysM in complex with the Urea-scaffold inhibitor 6 [3-(3-(4-Bromophenyl)ureido)benzoic acid]

Schnell, R., Maric, S., Schneider, G.

(2016) J Med Chem 59: 6848-6859

Released	2016-08-17
Method	X-RAY DIFFRACTION 2.57 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	O-phosphoserine sulfhydrylase (protein)
Unique Ligands	68V, CL, PLP

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5I7O \| pdb_00005i7o	Download File View File

Mycobacterium tuberculosis CysM in complex with the Urea-scaffold inhibitor 7 [3-(3-(4-Chlorophenyl)ureido)benzoic acid]

Schnell, R., Maric, S., Schneider, G.

(2016) J Med Chem 59: 6848-6859

Released	2016-08-17
Method	X-RAY DIFFRACTION 2.49 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	O-phosphoserine sulfhydrylase (protein)
Unique Ligands	PLP, S16

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5I7R \| pdb_00005i7r	Download File View File

Mycobacterium tuberculosis CysM in complex with the Urea-scaffold inhibitor 2 [3-(3-([1,1'-biphenyl]-3-yl)ureido)benzoic acid]

Schnell, R., Maric, S., Schneider, G.

(2016) J Med Chem 59: 6848-6859

Released	2016-08-17
Method	X-RAY DIFFRACTION 1.73 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	O-phosphoserine sulfhydrylase (protein)
Unique Ligands	68W, ACT, PLP

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5IW8 \| pdb_00005iw8	Download File View File

Mycobacterium tuberculosis CysM in complex with the Urea-scaffold inhibitor 4 [5-(3-([1,1'-Biphenyl]-3-yl)ureido)-2-hydroxybenzoic acid]

Brunner, K., Schnell, R., Schneider, G.

(2016) J Med Chem 59: 6848-6859

Released	2016-08-17
Method	X-RAY DIFFRACTION 2.04 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	O-phosphoserine sulfhydrylase (protein)
Unique Ligands	6EC, NA, PLP

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5IWC \| pdb_00005iwc	Download File View File

Mycobacterium tuberculosis CysM in complex with the Urea-scaffold inhibitor 3 [4-(3-([1,1'-Biphenyl]-3-yl)ureido)-2-hydroxybenzoic acid]

Schnell, R., Maric, S., Lindqvist, Y., Schneider, G.

(2016) J Med Chem 59: 6848-6859

Released	2016-08-17
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	O-phosphoserine sulfhydrylase (protein)
Unique Ligands	6EQ, PLP

1 to 14 of 14 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

2KV7 | pdb_00002kv7

NMR solution structure of a soluble PrgI mutant from Salmonella Typhimurium

2X9C | pdb_00002x9c

Crystal structure of a soluble PrgI mutant from Salmonella Typhimurium

3ZEI | pdb_00003zei

Structure of the Mycobacterium tuberculosis O-Acetylserine Sulfhydrylase (OASS) CysK1 in complex with a small molecule inhibitor

4BZP | pdb_00004bzp

Structure of the Mycobacterium tuberculosis APS kinase CysC in complex with ADP

4BZQ | pdb_00004bzq

Structure of the Mycobacterium tuberculosis APS kinase CysC in complex with ADP and APS

4BZX | pdb_00004bzx

Structure of the Mycobacterium tuberculosis APS kinase CysC in complex with AMPPNP and APS

4RFV | pdb_00004rfv

Structure of the Mycobacterium tuberculosis APS kinase CysC Cys556Ala mutant

5I6D | pdb_00005i6d

Mycobacterium tuberculosis CysM in complex with the Urea-scaffold inhibitor 5 [3-(3-(p-Tolyl)ureido) benzoic acid]

5I7A | pdb_00005i7a

Mycobacterium tuberculosis CysM in complex with the Urea-scaffold inhibitor 1 [3-(3-(3,4-Dichlorophenyl)ureido)benzoic acid]

5I7H | pdb_00005i7h

Mycobacterium tuberculosis CysM in complex with the Urea-scaffold inhibitor 6 [3-(3-(4-Bromophenyl)ureido)benzoic acid]

5I7O | pdb_00005i7o

Mycobacterium tuberculosis CysM in complex with the Urea-scaffold inhibitor 7 [3-(3-(4-Chlorophenyl)ureido)benzoic acid]

5I7R | pdb_00005i7r

Mycobacterium tuberculosis CysM in complex with the Urea-scaffold inhibitor 2 [3-(3-([1,1'-biphenyl]-3-yl)ureido)benzoic acid]

5IW8 | pdb_00005iw8

Mycobacterium tuberculosis CysM in complex with the Urea-scaffold inhibitor 4 [5-(3-([1,1'-Biphenyl]-3-yl)ureido)-2-hydroxybenzoic acid]

5IWC | pdb_00005iwc

Mycobacterium tuberculosis CysM in complex with the Urea-scaffold inhibitor 3 [4-(3-([1,1'-Biphenyl]-3-yl)ureido)-2-hydroxybenzoic acid]

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2KV7 | pdb_00002kv7

2X9C | pdb_00002x9c

3ZEI | pdb_00003zei

4BZP | pdb_00004bzp

4BZQ | pdb_00004bzq

4BZX | pdb_00004bzx

4RFV | pdb_00004rfv

5I6D | pdb_00005i6d

5I7A | pdb_00005i7a

5I7H | pdb_00005i7h

5I7O | pdb_00005i7o

5I7R | pdb_00005i7r

5IW8 | pdb_00005iw8

5IWC | pdb_00005iwc