RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Perrett, H.R."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 38 Structures.

Refinements

Structure Determination Methodology

experimental (38)

Scientific Name of Source Organism

	Severe acute respiratory syndrome coronavirus 2 (34)
	Homo sapiens (17)
	Bat coronavirus RaTG13 (1)
	Pangolin coronavirus (1)

Taxonomy

	Riboviria (36)
	Eukaryota (17)

Experimental Method

	ELECTRON MICROSCOPY (35)
	X-RAY DIFFRACTION (3)

Polymer Entity Type

Protein (38)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.5 - 3.0 (5)
	3.0 - 3.5 (6)
	3.5 - 4.0 (15)
	4.0 - 4.5 (6)
	> 4.5 (4)

Release Date

2020 - 2024 (38)

Enzyme Classification Name

	Hydrolases (12)
	Transferases (1)

Symmetry Type

	Asymmetric (25)
	Cyclic (13)

AllSelected

1 to 25 of 38 Structures

Page 1 of 2

Sort by

Explore in 3D

6ZGE \| pdb_00006zge	Download File View File

Uncleavable Spike Protein of SARS-CoV-2 in Closed Conformation

Wrobel, A.G., Benton, D.J., Rosenthal, P.B., Gamblin, S.J.

(2020) Nat Struct Mol Biol 27: 763-767

Released	2020-07-01
Method	ELECTRON MICROSCOPY 2.6 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

Explore in 3D

6ZGF \| pdb_00006zgf	Download File View File

Spike Protein of RaTG13 Bat Coronavirus in Closed Conformation

Wrobel, A.G., Benton, D.J., Rosenthal, P.B., Gamblin, S.J.

(2020) Nat Struct Mol Biol 27: 763-767

Released	2020-07-01
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Bat coronavirus RaTG13
Macromolecule	Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, FUC, NAG

Explore in 3D

6ZGG \| pdb_00006zgg	Download File View File

Furin Cleaved Spike Protein of SARS-CoV-2 with One RBD Erect

Wrobel, A.G., Benton, D.J., Rosenthal, P.B., Gamblin, S.J.

(2020) Nat Struct Mol Biol 27: 763-767

Released	2020-07-01
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)

Explore in 3D

6ZGH \| pdb_00006zgh	Download File View File

Furin Cleaved Spike Protein of SARS-CoV-2 in Intermediate Conformation

Wrobel, A.G., Benton, D.J., Rosenthal, P.B., Gamblin, S.J.

(2020) Nat Struct Mol Biol 27: 763-767

Released	2020-07-01
Method	ELECTRON MICROSCOPY 6.8 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)

Explore in 3D

6ZGI \| pdb_00006zgi	Download File View File

Furin Cleaved Spike Protein of SARS-CoV-2 in Closed Conformation

Wrobel, A.G., Benton, D.J., Rosenthal, P.B., Gamblin, S.J.

(2020) Nat Struct Mol Biol 27: 763-767

Released	2020-07-01
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

Explore in 3D

7A5R \| pdb_00007a5r	Download File View File

Complex of SARS-CoV-2 spike and CR3022 Fab (Non-Uniform Refinement)

Wrobel, A.G., Benton, D.J., Rosenthal, P.B., Gamblin, S.J.

(2020) Nat Commun 11: 5337-5337

Released	2020-09-16
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	CR3022 Fab Heavy Chain (protein) CR3022 Fab Light Chain (protein) Spike glycoprotein (protein)
Unique branched monosaccharides	NAG

Explore in 3D

7A5S \| pdb_00007a5s	Download File View File

Complex of SARS-CoV-2 spike and CR3022 Fab (Homogeneous Refinement)

Wrobel, A.G., Benton, D.J., Rosenthal, P.B., Gamblin, S.J.

(2020) Nat Commun 11: 5337-5337

Released	2020-09-16
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	CR3022 Fab Heavy Chain (protein) CR3022 Fab Light Chain (protein) Spike glycoprotein (protein)
Unique branched monosaccharides	NAG

Explore in 3D

7A91 \| pdb_00007a91	Download File View File

Dissociated S1 domain of SARS-CoV-2 Spike bound to ACE2 (Non-Uniform Refinement)

Benton, D.J., Wrobel, A.G., Rosenthal, P.B., Gamblin, S.J.

(2020) Nature 588: 327-330

Released	2020-09-16
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Angiotensin-converting enzyme 2 (protein) Spike glycoprotein (protein)
Unique Ligands	NAG, ZN
Unique branched monosaccharides	NAG

Explore in 3D

7A92 \| pdb_00007a92	Download File View File

Dissociated S1 domain of SARS-CoV-2 Spike bound to ACE2 (Unmasked Refinement)

Benton, D.J., Wrobel, A.G., Rosenthal, P.B., Gamblin, S.J.

(2020) Nature 588: 327-330

Released	2020-09-30
Method	ELECTRON MICROSCOPY 4.2 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Angiotensin-converting enzyme 2 (protein) Spike glycoprotein (protein)
Unique Ligands	NAG, ZN
Unique branched monosaccharides	NAG

Explore in 3D

7A93 \| pdb_00007a93	Download File View File

SARS-CoV-2 Spike Glycoprotein with 2 RBDs Erect

Benton, D.J., Wrobel, A.G., Rosenthal, P.B., Gamblin, S.J.

(2020) Nature 588: 327-330

Released	2020-09-16
Method	ELECTRON MICROSCOPY 5.9 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)

Explore in 3D

7A94 \| pdb_00007a94	Download File View File

SARS-CoV-2 Spike Glycoprotein with 1 ACE2 Bound

Benton, D.J., Wrobel, A.G., Rosenthal, P.B., Gamblin, S.J.

(2020) Nature 588: 327-330

Released	2020-09-16
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Angiotensin-converting enzyme 2 (protein) Spike glycoprotein (protein)
Unique Ligands	NAG, ZN

Explore in 3D

7A95 \| pdb_00007a95	Download File View File

SARS-CoV-2 Spike Glycoprotein with 1 ACE2 Bound and 1 RBD Erect in Clockwise Direction

Benton, D.J., Wrobel, A.G., Rosenthal, P.B., Gamblin, S.J.

(2020) Nature 588: 327-330

Released	2020-09-16
Method	ELECTRON MICROSCOPY 4.3 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Angiotensin-converting enzyme 2 (protein) Spike glycoprotein (protein)

Explore in 3D

7A96 \| pdb_00007a96	Download File View File

SARS-CoV-2 Spike Glycoprotein with 1 ACE2 Bound and 1 RBD Erect in Anticlockwise Direction

Benton, D.J., Wrobel, A.G., Rosenthal, P.B., Gamblin, S.J.

(2020) Nature 588: 327-330

Released	2020-09-16
Method	ELECTRON MICROSCOPY 4.8 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Angiotensin-converting enzyme 2 (protein) Spike glycoprotein (protein)

Explore in 3D

7A97 \| pdb_00007a97	Download File View File

SARS-CoV-2 Spike Glycoprotein with 2 ACE2 Bound

Benton, D.J., Wrobel, A.G., Rosenthal, P.B., Gamblin, S.J.

(2020) Nature 588: 327-330

Released	2020-09-16
Method	ELECTRON MICROSCOPY 4.4 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Angiotensin-converting enzyme 2 (protein) Spike glycoprotein (protein)

Explore in 3D

7A98 \| pdb_00007a98	Download File View File

SARS-CoV-2 Spike Glycoprotein with 3 ACE2 Bound

Benton, D.J., Wrobel, A.G., Rosenthal, P.B., Gamblin, S.J.

(2020) Nature 588: 327-330

Released	2020-09-23
Method	ELECTRON MICROSCOPY 5.4 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Angiotensin-converting enzyme 2 (protein) Spike glycoprotein (protein)

Explore in 3D

7B62 \| pdb_00007b62	Download File View File

Crystal structure of SARS-CoV-2 spike protein N-terminal domain in complex with biliverdin

Pye, V.E., Rosa, A., Roustan, C., Cherepanov, P.

(2021) Sci Adv 7:

Released	2021-04-28
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)
Unique Ligands	1PE, BLA, NAG, PEG, PG4, PGE

Explore in 3D

7BBH \| pdb_00007bbh	Download File View File

Structure of Coronavirus Spike from Smuggled Guangdong Pangolin

Wrobel, A.G., Benton, D.J., Rosenthal, P.B., Gamblin, S.J.

(2021) Nat Commun 12: 837-837

Released	2020-12-30
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Pangolin coronavirus
Macromolecule	Surface glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

Explore in 3D

7BNM \| pdb_00007bnm	Download File View File

Closed conformation of D614G SARS-CoV-2 spike protein

Benton, D.J., Wrobel, A.G., Rosenthal, P.B., Gamblin, S.J.

(2021) Proc Natl Acad Sci U S A 118:

Released	2021-02-03
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

Explore in 3D

7BNN \| pdb_00007bnn	Download File View File

Open conformation of D614G SARS-CoV-2 spike with 1 Erect RBD

Benton, D.J., Wrobel, A.G., Rosenthal, P.B., Gamblin, S.J.

(2021) Proc Natl Acad Sci U S A 118:

Released	2021-02-03
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	FUC, NAG

Explore in 3D

7BNO \| pdb_00007bno	Download File View File

Open conformation of D614G SARS-CoV-2 spike with 2 Erect RBDs

Benton, D.J., Wrobel, A.G., Rosenthal, P.B., Gamblin, S.J.

(2021) Proc Natl Acad Sci U S A 118:

Released	2021-02-03
Method	ELECTRON MICROSCOPY 4.2 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

Explore in 3D

7NT9 \| pdb_00007nt9	Download File View File

Trimeric SARS-CoV-2 spike ectodomain in complex with biliverdin (closed conformation)

Rosa, A., Pye, V.E., Nans, A., Cherepanov, P.

(2021) Sci Adv 7:

Released	2021-04-28
Method	ELECTRON MICROSCOPY 3.36 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)
Unique Ligands	BLA, NAG
Unique branched monosaccharides	NAG

Explore in 3D

7NTA \| pdb_00007nta	Download File View File

Trimeric SARS-CoV-2 spike ectodomain in complex with biliverdin (one RBD erect)

Rosa, A., Pye, V.E., Nans, A., Cherepanov, P.

(2021) Sci Adv 7:

Released	2021-04-28
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)
Unique Ligands	BLA, NAG
Unique branched monosaccharides	NAG

Explore in 3D

7NTC \| pdb_00007ntc	Download File View File

Trimeric SARS-CoV-2 spike ectodomain bound to P008_056 Fab

Rosa, A., Pye, V.E., Nans, A., Cherepanov, P.

(2021) Sci Adv 7:

Released	2021-04-28
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	P008_056 Fab Heavy chain (protein) P008_056 Fab Light chain (protein) Spike glycoprotein (protein)
Unique Ligands	BLA, NAG
Unique branched monosaccharides	NAG

Explore in 3D

7R0Z \| pdb_00007r0z	Download File View File

Dissociated S1 domain of Alpha Variant SARS-CoV-2 Spike bound to ACE2 (Non-Uniform Refinement)

Benton, D.J., Wrobel, A.G., Gamblin, S.J.

(2022) Nat Commun 13: 1178-1178

Released	2022-03-09
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Angiotensin-converting enzyme 2 (protein) Spike glycoprotein (protein)
Unique Ligands	NAG, ZN

Explore in 3D

7R10 \| pdb_00007r10	Download File View File

Dissociated S1 domain of Alpha Variant SARS-CoV-2 Spike bound to ACE2

Benton, D.J., Wrobel, A.G., Gamblin, S.J.

(2022) Nat Commun 13: 1178-1178

Released	2022-03-02
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Angiotensin-converting enzyme 2 (protein) Spike glycoprotein (protein)
Unique Ligands	NAG, ZN

1 to 25 of 38 Structures

Page 1 of 2

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

6ZGE | pdb_00006zge

6ZGF | pdb_00006zgf

6ZGG | pdb_00006zgg

6ZGH | pdb_00006zgh

6ZGI | pdb_00006zgi

7A5R | pdb_00007a5r

7A5S | pdb_00007a5s

7A91 | pdb_00007a91

7A92 | pdb_00007a92

7A93 | pdb_00007a93

7A94 | pdb_00007a94

7A95 | pdb_00007a95

7A96 | pdb_00007a96

7A97 | pdb_00007a97

7A98 | pdb_00007a98

7B62 | pdb_00007b62

7BBH | pdb_00007bbh

7BNM | pdb_00007bnm

7BNN | pdb_00007bnn

7BNO | pdb_00007bno

7NT9 | pdb_00007nt9

7NTA | pdb_00007nta

7NTC | pdb_00007ntc

7R0Z | pdb_00007r0z

7R10 | pdb_00007r10