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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Opella, S.J."

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Search Summary

This query matches 256 Structures.

Refinements

Structure Determination Methodology

experimental (256)

Scientific Name of Source Organism

	Homo sapiens (133)
	Mus musculus (17)
	Escherichia coli K-12 (12)
	Staphylococcus aureus (10)
	Escherichia coli (8)
	Human immunodeficiency virus 1 (7)
	Pseudomonas putida (7)
	Mycolicibacterium smegmatis MC2 155 (6)
	synthetic construct (6)
	Pseudomonas aeruginosa PAO1 (5)

More...

Taxonomy

	Eukaryota (163)
	Bacteria (90)
	Riboviria (15)
	other sequences (6)
	Eukaryota (eukaryotes) (4)
	Duplodnaviria (3)
	Archaea (2)
	unclassified bacterial viruses (1)

Experimental Method

	X-RAY DIFFRACTION (223)
	ELECTRON MICROSCOPY (19)
	SOLUTION NMR (14)

Polymer Entity Type

	Protein (255)
	RNA (2)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (12)
	1.5 - 2.0 (64)
	2.0 - 2.5 (72)
	2.5 - 3.0 (62)
	3.0 - 3.5 (22)
	3.5 - 4.0 (6)
	4.0 - 4.5 (4)

Release Date

	1995 - 1999 (6)
	2000 - 2004 (12)
	2005 - 2009 (18)
	2010 - 2014 (37)
	2015 - 2019 (99)
	2020 - 2024 (84)

Enzyme Classification Name

	Hydrolases (58)
	Transferases (47)
	Ligases (13)
	Oxidoreductases (15)
	Lyases (8)

Membrane Protein Annotation

	PDBTM (13)
	MemProtMD (11)
	OPM (8)
	mpstruc (6)

Symmetry Type

	Asymmetric (162)
	Cyclic (71)
	Dihedral (21)
	Tetrahedral (6)
	Octahedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (44)
	All beta proteins (26)
	Alpha and beta proteins (a/b) (30)
	Artifacts (22)
	All alpha proteins (10)
	Small proteins (2)
	Multi-domain proteins (alpha and beta) (1)
	Membrane and cell surface proteins and peptides (1)

AllSelected

1 to 25 of 256 Structures

Page 1 of 11

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1ECB \| pdb_00001ecb	Download File View File

ESCHERICHIA COLI GLUTAMINE PHOSPHORIBOSYLPYROPHOSPHATE (PRPP) AMIDOTRANSFERASE COMPLEXED WITH 2 GMP, 1 MG PER SUBUNIT

Krahn, J.M., Smith, J.L.

(1997) Biochemistry 36: 11061-11068

Released	1998-04-15
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli
Macromolecule	GLUTAMINE PHOSPHORIBOSYLPYROPHOSPHATE AMIDOTRANSFERASE (protein)
Unique Ligands	5GP, MG

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1ECC \| pdb_00001ecc	Download File View File

ESCHERICHIA COLI GLUTAMINE PHOSPHORIBOSYLPYROPHOSPHATE (PRPP) AMIDOTRANSFERASE COMPLEXED WITH MN-CPRPP AND 5-OXO-NORLEUCINE

Krahn, J.M., Smith, J.L.

(1997) Biochemistry 36: 11061-11068

Released	1998-04-15
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli
Macromolecule	GLUTAMINE PHOSPHORIBOSYLPYROPHOSPHATE AMIDOTRANSFERASE (protein)
Unique Ligands	MN, ONL, PCP

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1ECF \| pdb_00001ecf	Download File View File

ESCHERICHIA COLI GLUTAMINE PHOSPHORIBOSYLPYROPHOSPHATE (PRPP) AMIDOTRANSFERASE

Krahn, J.M.

(1998) Protein Sci 7: 39-51

Released	1996-11-08
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	GLUTAMINE PHOSPHORIBOSYLPYROPHOSPHATE AMIDOTRANSFERASE (protein)
Unique Ligands	PIN

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1ECG \| pdb_00001ecg	Download File View File

DON INACTIVATED ESCHERICHIA COLI GLUTAMINE PHOSPHORIBOSYLPYROPHOSPHATE (PRPP) AMIDOTRANSFERASE

Krahn, J.M.

(1996) J Biological Chem 271: 15549-15557

Released	1996-11-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	GLUTAMINE PHOSPHORIBOSYLPYROPHOSPHATE AMIDOTRANSFERASE (protein)
Unique Ligands	ONL, PIN

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1ECJ \| pdb_00001ecj	Download File View File

ESCHERICHIA COLI GLUTAMINE PHOSPHORIBOSYLPYROPHOSPHATE (PRPP) AMIDOTRANSFERASE COMPLEXED WITH 2 AMP PER TETRAMER

Muchmore, C.R., Krahn, J.M., Smith, J.L.

(1998) Protein Sci 7: 39-51

Released	1998-04-15
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	GLUTAMINE PHOSPHORIBOSYLPYROPHOSPHATE AMIDOTRANSFERASE (protein)
Unique Ligands	AMP

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1IVO \| pdb_00001ivo	Download File View File

Crystal Structure of the Complex of Human Epidermal Growth Factor and Receptor Extracellular Domains.

Ogiso, H., Ishitani, R., Nureki, O., Fukai, S., Yamanaka, M., Kim, J.H., Saito, K., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2002) Cell 110: 775-787

Released	2002-10-16
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Homo sapiens
Macromolecule	Epidermal Growth Factor Receptor (protein) Epidermal growth factor (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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1L8L \| pdb_00001l8l	Download File View File

Molecular basis for the local confomational rearrangement of human phosphoserine phosphatase

Kim, H.Y., Heo, Y.S., Kim, J.H., Park, M.H., Moon, J., Park, S.Y., Lee, T.G., Jeon, Y.H., Ro, S., Hwang, K.Y.

(2002) J Biological Chem 277: 46651-46658

Released	2003-04-01
Method	X-RAY DIFFRACTION 2.51 Å
Organisms	Homo sapiens
Macromolecule	L-3-phosphoserine phosphatase (protein)
Unique Ligands	APO

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1L8O \| pdb_00001l8o	Download File View File

Molecular basis for the local conformational rearrangement of human phosphoserine phosphatase

Kim, H.Y., Heo, Y.S., Kim, J.H., Park, M.H., Moon, J., Park, S.Y., Lee, T.G., Jeon, Y.H., Ro, S., Hwang, K.Y.

(2002) J Biological Chem 277: 46651-46658

Released	2003-04-01
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	L-3-phosphoserine phosphatase (protein)
Unique Ligands	PO4, SER

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1O9A \| pdb_00001o9a	Download File View File

Solution structure of the complex of 1F12F1 from fibronectin with B3 from FnBB from S. dysgalactiae

Schwarz-Linek, U., Werner, J.M., Pickford, A.R., Pilka, E.S., Gurusiddappa, S., Briggs, J.A.G., Hook, M., Campbell, I.D., Potts, J.R.

(2003) Nature 423: 177-181

Released	2003-05-08
Method	SOLUTION NMR
Organisms	Homo sapiens Streptococcus dysgalactiae
Macromolecule	FIBRONECTIN (protein) FIBRONECTIN BINDING PROTEIN (protein)

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1PMS \| pdb_00001pms	Download File View File

PLECKSTRIN HOMOLOGY DOMAIN OF SON OF SEVENLESS 1 (SOS1) WITH GLYCINE-SERINE ADDED TO THE N-TERMINUS, NMR, 20 STRUCTURES

Koshiba, S., Kigawa, T., Kim, J., Shirouzu, M., Bowtell, D., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(1997) J Mol Biology 269: 579-591

Released	1997-05-15
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	SOS 1 (protein)

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1R6L \| pdb_00001r6l	Download File View File

Crystal Structure Of The tRNA Processing Enzyme Rnase pH From Pseudomonas Aeruginosa

Choi, J.M., Park, E.Y., Kim, J.H., Chang, S.K., Cho, Y.

(2004) J Biological Chem 279: 755-764

Released	2004-02-17
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Ribonuclease PH (protein)
Unique Ligands	NHE, SO4

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1R6M \| pdb_00001r6m	Download File View File

Crystal Structure Of The tRNA Processing Enzyme Rnase pH From Pseudomonas Aeruginosa In Complex With Phosphate

Choi, J.M., Park, E.Y., Kim, J.H., Chang, S.K., Cho, Y.

(2004) J Biological Chem 279: 755-764

Released	2004-02-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Ribonuclease PH (protein)
Unique Ligands	PO4

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1UC7 \| pdb_00001uc7	Download File View File

Crystal structure of DsbDgamma

Kim, J.H., Kim, S.J., Jeong, D.G., Son, J.H., Ryu, S.E.

(2003) FEBS Lett 543: 164-169

Released	2004-04-27
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	Thiol:disulfide interchange protein dsbD (protein)

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1UDT \| pdb_00001udt	Download File View File

Crystal structure of Human Phosphodiesterase 5 complexed with Sildenafil(Viagra)

Sung, B.-J., Lee, J.I., Heo, Y.-S., Kim, J.H., Moon, J., Yoon, J.M., Hyun, Y.-L., Kim, E., Eum, S.J., Lee, T.G., Cho, J.M., Park, S.-Y., Lee, J.-O., Jeon, Y.H., Hwang, K.Y., Ro, S.

(2003) Nature 425: 98-102

Released	2004-05-11
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	cGMP-specific 3',5'-cyclic phosphodiesterase (protein)
Unique Ligands	MG, VIA, ZN

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1UDU \| pdb_00001udu	Download File View File

Crystal structure of Human Phosphodiesterase 5 complexed with tadalafil(Cialis)

Sung, B.-J., Lee, J.I., Heo, Y.-S., Kim, J.H., Moon, J., Yoon, J.M., Hyun, Y.-L., Kim, E., Eum, S.J., Lee, T.G., Cho, J.M., Park, S.-Y., Lee, J.-O., Jeon, Y.H., Hwang, K.Y., Ro, S.

(2003) Nature 425: 98-102

Released	2004-05-11
Method	X-RAY DIFFRACTION 2.83 Å
Organisms	Homo sapiens
Macromolecule	cGMP-specific 3',5'-cyclic phosphodiesterase (protein)
Unique Ligands	CIA, MG, ZN

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1UHO \| pdb_00001uho	Download File View File

Crystal structure of Human Phosphodiesterase 5 complexed with Vardenafil(Levitra)

Sung, B.-J., Lee, J.I., Heo, Y.-S., Kim, J.H., Moon, J., Yoon, J.M., Hyun, Y.-L., Kim, E., Eum, S.J., Lee, T.G., Cho, J.M., Park, S.-Y., Lee, J.-O., Jeon, Y.H., Hwang, K.Y., Ro, S.

(2003) Nature 425: 98-102

Released	2004-07-09
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	cGMP-specific 3',5'-cyclic phosphodiesterase (protein)
Unique Ligands	MG, VDN, ZN

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1UKH \| pdb_00001ukh	Download File View File

Structural basis for the selective inhibition of JNK1 by the scaffolding protein JIP1 and SP600125

Heo, Y.-S., Kim, Y.K., Sung, B.-J., Lee, H.S., Lee, J.I., Seo, C.I., Park, S.-Y., Kim, J.H., Hyun, Y.-L., Jeon, Y.H., Ro, S., Lee, T.G., Cho, J.M., Hwang, K.Y., Yang, C.-H.

(2004) EMBO J 23: 2185-2195

Released	2004-08-30
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	11-mer peptide from C-jun-amino-terminal kinase interacting protein 1 (protein) Mitogen-activated protein kinase 8 isoform 4 (protein)

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1UKI \| pdb_00001uki	Download File View File

Structural basis for the selective inhibition of JNK1 by the scaffolding protein JIP1 and SP600125

Heo, Y.-S., Kim, Y.K., Sung, B.-J., Lee, H.S., Lee, J.I., Seo, C.I., Park, S.-Y., Kim, J.H., Hyun, Y.-L., Jeon, Y.H., Ro, S., Lee, T.G., Cho, J.M., Hwang, K.Y., Yang, C.-H.

(2004) EMBO J 23: 2185-2195

Released	2004-08-30
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	11-mer peptide from C-jun-amino-terminal kinase interacting protein 1 (protein) mitogen-activated protein kinase 8 isoform 4 (protein)
Unique Ligands	537

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1XM2 \| pdb_00001xm2	Download File View File

Crystal structure of Human PRL-1

Jeong, D.G., Kim, S.J., Kim, J.H., Son, J.H., Ryu, S.E.

(2005) J Mol Biology 345: 401-413

Released	2005-01-25
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine Phosphatase (protein)
Unique Ligands	SO4

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1YZ4 \| pdb_00001yz4	Download File View File

Crystal structure of DUSP15

Kim, S.J., Ryu, S.E., Jeong, D.G., Yoon, T.S., Kim, J.H., Cho, Y.H., Jeong, S.K., Lee, J.W., Son, J.H.

(2005) Proteins 61: 694-697

Released	2005-11-01
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	dual specificity phosphatase-like 15 isoform a (protein)
Unique Ligands	BOG, SO4

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1ZZW \| pdb_00001zzw	Download File View File

Crystal Structure of catalytic domain of Human MAP Kinase Phosphatase 5

Jeong, D.G., Yoon, T.S., Kim, J.H., Shim, M.Y., Jeong, S.K., Son, J.H., Ryu, S.E., Kim, S.J.

(2006) J Mol Biology 360: 946-955

Released	2006-07-04
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Dual specificity protein phosphatase 10 (protein)
Unique Ligands	EDO, SO4

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2B9L \| pdb_00002b9l	Download File View File

Crystal structure of prophenoloxidase activating factor-II from the beetle Holotrichia diomphalia

Piao, S., Song, Y.-L., Park, S.Y., Lee, B.L., Oh, B.-H., Ha, N.-C.

(2005) EMBO J 24: 4404-4414

Released	2006-01-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Holotrichia diomphalia
Macromolecule	prophenoloxidase activating factor (protein)
Unique Ligands	CA, SO4
Unique branched monosaccharides	FUC, NAG

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2ESB \| pdb_00002esb	Download File View File

Crystal structure of human DUSP18

Kim, S.J., Ryu, S.E., Jeong, D.G., Cho, Y.H., Yoon, T.S., Kim, J.H.

(2006) Acta Crystallogr D Biol Crystallogr 62: 582-588

Released	2006-06-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Dual specificity protein phosphatase 18 (protein)
Unique Ligands	ACT, EPE

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2EWT \| pdb_00002ewt	Download File View File

Crystal structure of the DNA-binding domain of BldD

Kim, I.K., Lee, C.J., Kim, M.K., Kim, J.M., Kim, J.H., Yim, H.S., Cha, S.S., Kang, S.O.

(2006) Mol Microbiol 60: 1179-1193

Released	2006-06-13
Method	X-RAY DIFFRACTION 1.81 Å
Organisms	Streptomyces coelicolor A3(2)
Macromolecule	putative DNA-binding protein (protein)
Unique Ligands	SO4