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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Numao, S."

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Search Summary

This query matches 33 Structures.

Refinements

Structure Determination Methodology

experimental (33)

Scientific Name of Source Organism

	Homo sapiens (27)
	Drosophila melanogaster (3)
	Campylobacter jejuni (2)
	Campylobacter lari (1)

Taxonomy

	Eukaryota (30)
	Bacteria (3)

Experimental Method

	X-RAY DIFFRACTION (31)
	SOLUTION NMR (2)

Polymer Entity Type

Protein (33)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (10)
	2.0 - 2.5 (15)
	2.5 - 3.0 (2)
	3.0 - 3.5 (2)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (14)
	2005 - 2009 (6)
	2010 - 2014 (1)
	2015 - 2019 (3)
	2020 - 2024 (4)
	2025 - 2029 (4)

Enzyme Classification Name

	Hydrolases (26)
	Transferases (5)
	Lyases (4)

Membrane Protein Annotation

	MemProtMD (1)
	OPM (1)
	PDBTM (1)
	mpstruc (1)

Symmetry Type

	Asymmetric (29)
	Cyclic (4)
	Tetrahedral (1)

SCOP Classification

	All beta proteins (25)
	Alpha and beta proteins (a/b) (19)
	All alpha proteins (9)
	Alpha and beta proteins (a+b) (6)
	Artifacts (1)

AllSelected

1 to 25 of 33 Structures

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1BSI \| pdb_00001bsi	Download File View File

HUMAN PANCREATIC ALPHA-AMYLASE FROM PICHIA PASTORIS, GLYCOSYLATED PROTEIN

Rydberg, E.H., Sidhu, G., Vo, H.C., Hewitt, J., Cote, H.C.F., Wang, Y., Numao, S., Macgillivray, R.T.A., Overall, C.M., Brayer, G.D., Withers, S.G.

(1999) Protein Sci 8: 635-643

Released	1999-05-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	ALPHA-AMYLASE (protein)
Unique Ligands	CA, CL, NAG

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1KB3 \| pdb_00001kb3	Download File View File

Three Dimensional Structure Analysis of the R195A Variant of Human Pancreatic Alpha Amylase

Numao, S., Maurus, R., Sidhu, G., Wang, Y., Overall, C.M., Brayer, G.D., Withers, S.G.

(2002) Biochemistry 41: 215-225

Released	2002-05-01
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	ALPHA-AMYLASE, PANCREATIC (protein)
Unique Ligands	CA, NAG

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1KGU \| pdb_00001kgu	Download File View File

THREE DIMENSIONAL STRUCTURE ANALYSIS OF THE R337A VARIANT OF HUMAN PANCREATIC ALPHA-AMYLASE

Numao, S., Maurus, R., Sidhu, G., Wang, Y., Overall, C.M., Brayer, G.D., Withers, S.G.

(2002) Biochemistry 41: 215-225

Released	2002-01-16
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	ALPHA-AMYLASE, PANCREATIC (protein)
Unique Ligands	CA

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1KGW \| pdb_00001kgw	Download File View File

THREE DIMENSIONAL STRUCTURE ANALYSIS OF THE R337Q VARIANT OF HUMAN PANCREATIC ALPHA-MYLASE

Numao, S., Maurus, R., Sidhu, G., Wang, Y., Overall, C.M., Brayer, G.D., Withers, S.G.

(2002) Biochemistry 41: 215-225

Released	2002-01-16
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	ALPHA-AMYLASE, PANCREATIC (protein)
Unique Ligands	CA, NAG

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1KGX \| pdb_00001kgx	Download File View File

Three Dimensional Structure Analysis of the R195Q Variant of Human Pancreatic Alpha Amylase

Numao, S., Maurus, R., Sidhu, G., Wang, Y., Overall, C.M., Brayer, G.D., Withers, S.G.

(2002) Biochemistry 41: 215-225

Released	2002-01-16
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	ALPHA-AMYLASE, PANCREATIC (protein)
Unique Ligands	CA, NAG

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1QWN \| pdb_00001qwn	Download File View File

GOLGI ALPHA-MANNOSIDASE II Covalent Intermediate Complex with 5-fluoro-gulosyl-fluoride

Numao, S., Kuntz, D.A., Withers, S.G., Rose, D.R.

(2003) J Biological Chem 278: 48074-48083

Released	2003-10-07
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Drosophila melanogaster
Macromolecule	Alpha-mannosidase II (protein)
Unique Ligands	GUL, MPD, NAG, TRS, ZN

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1QWU \| pdb_00001qwu	Download File View File

Golgi alpha-mannosidase II D341N mutant complex with 5-F-guloside

Numao, S., Kuntz, D.A., Withers, S.G., Rose, D.R.

(2003) J Biological Chem 278: 48074-48083

Released	2003-10-07
Method	X-RAY DIFFRACTION 2.03 Å
Organisms	Drosophila melanogaster
Macromolecule	Alpha-mannosidase II (protein)
Unique Ligands	GUL, MPD, NAG, ZN

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1QX1 \| pdb_00001qx1	Download File View File

Golgi alpha-mannosidase II D341N mutant complex with 2-F-mannosyl-F

Numao, S., Kuntz, D.A., Withers, S.G., Rose, D.R.

(2003) J Biological Chem 278: 48074-48083

Released	2003-10-07
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Drosophila melanogaster
Macromolecule	Alpha-mannosidase II (protein)
Unique Ligands	FMF, MPD, NAG, ZN

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1U2Y \| pdb_00001u2y	Download File View File

In situ extension as an approach for identifying novel alpha-amylase inhibitors, structure containing D-gluconhydroximo-1,5-lactam

Numao, S., Li, C., Damager, I., Wrodnigg, T.M., Begum, A., Overall, C.M., Brayer, G.D., Withers, S.G.

(2004) J Biological Chem 279: 48282-48291

Released	2004-09-07
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	Alpha-amylase, pancreatic (protein)
Unique Ligands	CA, CL, GOX, NAG

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1U30 \| pdb_00001u30	Download File View File

In situ extension as an approach for identifying novel alpha-amylase inhibitors, structure containing maltosyl-alpha (1,4)-D-gluconhydroximo-1,5-lactam

Numao, S., Li, C., Damager, I., Wrodnigg, T.M., Begum, A., Overall, C.M., Brayer, G.D., Withers, S.G.

(2004) J Biological Chem 279: 48282-48291

Released	2004-09-07
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Alpha-amylase, pancreatic (protein)
Unique Ligands	CA, CL, GOX, LAG, NAG

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1U33 \| pdb_00001u33	Download File View File

In situ extension as an approach for identifying novel alpha-amylase inhibitors

Numao, S., Li, C., Damager, I., Wrodnigg, T.M., Begum, A., Overall, C.M., Brayer, G.D., Withers, S.G.

(2004) J Biological Chem 279: 48282-48291

Released	2004-09-07
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	Alpha-amylase, pancreatic (protein)
Unique Ligands	CA, CL, LM2, NAG

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1XCW \| pdb_00001xcw	Download File View File

Acarbose Rearrangement Mechanism Implied by the Kinetic and Structural Analysis of Human Pancreatic alpha-Amylase in Complex with Analogues and Their Elongated Counterparts

Li, C., Begum, A., Numao, S., Park, K.H., Withers, S.G., Brayer, G.D.

(2005) Biochemistry 44: 3347-3357

Released	2004-12-07
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Alpha-amylase (protein)
Unique Ligands	CA, CL, NAG
Unique branched monosaccharides	AC1, GLC

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1XCX \| pdb_00001xcx	Download File View File

Acarbose Rearrangement Mechanism Implied by the Kinetic and Structural Analysis of Human Pancreatic alpha-Amylase in Complex with Analogues and Their Elongated Counterparts

Li, C., Begum, A., Numao, S., Park, K.H., Withers, S.G., Brayer, G.D.

(2005) Biochemistry 44: 3347-3357

Released	2004-12-07
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Alpha-amylase (protein)
Unique Ligands	CA, CL, NAG
Unique branched monosaccharides	AC1, BGC, GLC

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1XD0 \| pdb_00001xd0	Download File View File

Acarbose Rearrangement Mechanism Implied by the Kinetic and Structural Analysis of Human Pancreatic alpha-Amylase in Complex with Analogues and Their Elongated Counterparts

Li, C., Begum, A., Numao, S., Park, K.H., Withers, S.G., Brayer, G.D.

(2005) Biochemistry 44: 3347-3357

Released	2004-12-07
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Alpha-amylase (protein)
Unique Ligands	ARE, CA, CL, NAG

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1XD1 \| pdb_00001xd1	Download File View File

Acarbose Rearrangement Mechanism Implied by the Kinetic and Structural Analysis of Human Pancreatic alpha-Amylase in Complex with Analogues and Their Elongated Counterparts

Li, C., Begum, A., Numao, S., Park, K.H., Withers, S.G., Brayer, G.D.

(2005) Biochemistry 44: 3347-3357

Released	2004-12-07
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Alpha-amylase (protein)
Unique Ligands	6SA, CA, CL, NAG

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1XGZ \| pdb_00001xgz	Download File View File

Structure of the N298S variant of human pancreatic alpha-amylase

Maurus, R., Begum, A., Kuo, H.H., Racaza, A., Numao, S., Overall, C.M., Withers, S.G., Brayer, G.D.

(2005) Protein Sci 14: 743-755

Released	2005-05-24
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Alpha-amylase, pancreatic (protein)
Unique Ligands	CA, NAG

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1XH0 \| pdb_00001xh0	Download File View File

Structure of the N298S variant of human pancreatic alpha-amylase complexed with acarbose

Maurus, R., Begum, A., Kuo, H.H., Racaza, A., Numao, S., Overall, C.M., Withers, S.G., Brayer, G.D.

(2005) Protein Sci 14: 743-755

Released	2005-05-24
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Alpha-amylase, pancreatic (protein)
Unique Ligands	AAO, NAG

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1XH1 \| pdb_00001xh1	Download File View File

Structure of the N298S variant of human pancreatic alpha-amylase complexed with chloride

Maurus, R., Begum, A., Kuo, H.H., Racaza, A., Numao, S., Overall, C.M., Withers, S.G., Brayer, G.D.

(2005) Protein Sci 14: 743-755

Released	2005-05-24
Method	X-RAY DIFFRACTION 2.03 Å
Organisms	Homo sapiens
Macromolecule	Alpha-amylase, pancreatic (protein)
Unique Ligands	CA, CL, NAG

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1XH2 \| pdb_00001xh2	Download File View File

Structure of the N298S variant of human pancreatic alpha-amylase complexed with chloride and acarbose

Maurus, R., Begum, A., Kuo, H.H., Racaza, A., Numao, S., Overall, C.M., Withers, S.G., Brayer, G.D.

(2005) Protein Sci 14: 743-755

Released	2005-05-24
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Alpha-amylase, pancreatic (protein)
Unique Ligands	ARE, CA, CL, NAG

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2K32 \| pdb_00002k32	Download File View File

Truncated AcrA from Campylobacter jejuni for glycosylation studies

Slynko, V., Schubert, M., Numao, S., Kowarik, M., Aebi, M., Allain, F.

(2009) J Am Chem Soc 131: 1274-1281

Released	2009-02-03
Method	SOLUTION NMR
Organisms	Campylobacter jejuni
Macromolecule	A (protein)

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2K33 \| pdb_00002k33	Download File View File

Solution structure of an N-glycosylated protein using in vitro glycosylation

Slynko, V., Schubert, M., Numao, S., Kowarik, M., Aebi, M., Allain, F.H.-T.

(2009) J Am Chem Soc 131: 1274-1281

Released	2009-02-03
Method	SOLUTION NMR
Organisms	Campylobacter jejuni
Macromolecule	AcrA (protein)
Unique branched monosaccharides	A2G, B6D, BGC

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3RCE \| pdb_00003rce	Download File View File

Bacterial oligosaccharyltransferase PglB

Lizak, C., Gerber, S., Numao, S., Aebi, M., Locher, K.P.

(2011) Nature 474: 350-355

Released	2011-06-15
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Campylobacter lari
Macromolecule	Oligosaccharide transferase to N-glycosylate proteins (protein) Substrate Mimic Peptide (protein)
Unique Ligands	MG

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6ENB \| pdb_00006enb	Download File View File

LTA4 hydrolase (E297Q) mutant in complex with Pro-Gly-Pro peptide

Srinivas, H.

(2017) Sci Rep 7: 13591-13591

Released	2017-12-13
Method	X-RAY DIFFRACTION 1.84 Å
Organisms	Homo sapiens
Macromolecule	Leukotriene A-4 hydrolase (protein) PRO-GLY-PRO (protein)
Unique Ligands	ACT, IMD, YB, ZN

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6ENC \| pdb_00006enc	Download File View File

LTA4 hydrolase in complex with Compound11

Srinivas, H.

(2017) Sci Rep 7: 13591-13591

Released	2017-12-13
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	Leukotriene A-4 hydrolase (protein)
Unique Ligands	ACT, BGW, IMD, YB, ZN

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6END \| pdb_00006end	Download File View File

LTA4 hydrolase in complex with Compound15

Srinivas, H.

(2017) Sci Rep 7: 13591-13591

Released	2017-12-13
Method	X-RAY DIFFRACTION 2.24 Å
Organisms	Homo sapiens
Macromolecule	Leukotriene A-4 hydrolase (protein)
Unique Ligands	ACT, BGK, IMD, YB, ZN

1 to 25 of 33 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1BSI | pdb_00001bsi

1KB3 | pdb_00001kb3

1KGU | pdb_00001kgu

1KGW | pdb_00001kgw

1KGX | pdb_00001kgx

1QWN | pdb_00001qwn

1QWU | pdb_00001qwu

1QX1 | pdb_00001qx1

1U2Y | pdb_00001u2y

1U30 | pdb_00001u30

1U33 | pdb_00001u33

1XCW | pdb_00001xcw

1XCX | pdb_00001xcx

1XD0 | pdb_00001xd0

1XD1 | pdb_00001xd1

1XGZ | pdb_00001xgz

1XH0 | pdb_00001xh0

1XH1 | pdb_00001xh1

1XH2 | pdb_00001xh2

2K32 | pdb_00002k32

2K33 | pdb_00002k33

3RCE | pdb_00003rce

6ENB | pdb_00006enb

6ENC | pdb_00006enc

6END | pdb_00006end