RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Nguyen, T.T."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 56 Structures.

Refinements

Structure Determination Methodology

experimental (56)

Scientific Name of Source Organism

	Homo sapiens (22)
	Severe acute respiratory syndrome coronavirus 2 (13)
	Halalkalibacterium halodurans C-125 (5)
	Deinococcus radiodurans (4)
	Streptomyces coelicolor (4)
	synthetic construct (4)
	Toxoplasma gondii (3)
	Escherichia coli (2)
	Mus musculus (2)
	Caldanaerobacter subterraneus subsp. tengcongensis (1)

More...

Taxonomy

	Eukaryota (25)
	Bacteria (19)
	Riboviria (15)
	other sequences (4)
	Varidnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (47)
	ELECTRON MICROSCOPY (9)

Polymer Entity Type

	Protein (56)
	RNA (6)
	DNA (3)

Refinement Resolution (Å)

	1.0 - 1.5 (4)
	1.5 - 2.0 (19)
	2.0 - 2.5 (14)
	2.5 - 3.0 (6)
	3.0 - 3.5 (10)
	3.5 - 4.0 (3)

Release Date

	2005 - 2009 (7)
	2010 - 2014 (16)
	2015 - 2019 (2)
	2020 - 2024 (31)

Enzyme Classification Name

	Hydrolases (30)
	Transferases (3)
	Isomerases (1)

Membrane Protein Annotation

OPM (1)

Symmetry Type

	Asymmetric (26)
	Cyclic (22)
	Dihedral (9)

SCOP Classification

	Alpha and beta proteins (a/b) (7)
	All beta proteins (10)
	Alpha and beta proteins (a+b) (2)
	All alpha proteins (1)

AllSelected

1 to 25 of 56 Structures

Page 1 of 3

Sort by

Explore in 3D

2IPK \| pdb_00002ipk	Download File View File

Crystal Structure of the MHC Class II Molecule HLA-DR1 in Complex with the Fluorogenic Peptide, AcPKXVKQNTLKLAT (X=3-[5-(dimethylamino)-1,3-dioxo-1,3-dihydro-2H-isoindol-2-yl]-L-alanine) and the Superantigen, SEC3 Variant 3B2

Nguyen, T.T., Stern, L.J.

(2007) Nat Chem Biol 3: 222-228

Released	2007-03-13
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens Influenza A virus Staphylococcus aureus subsp. aureus Mu50
Macromolecule	Enterotoxin type C-3 (protein) HA related Fluorogenic Peptide, AcPKXVKQNTLKLAT (X=3-[5-(dimethylamino)-1,3-dioxo-1,3-dihydro-2H-isoindol-2-yl]-L-alanine) (protein) HLA class II histocompatibility antigen, DR alpha chain (protein) HLA class II histocompatibility antigen, DRB1-1 beta chain (protein)

Explore in 3D

3FDK \| pdb_00003fdk	Download File View File

Crystal structure of hydrolase DR0930 with promiscuous catalytic activity

Fedorov, A.A., Fedorov, L.V., Xiang, D.F., Raushel, F.M., Almo, S.C.

(2009) Biochemistry 48: 2237-2247

Released	2009-06-30
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Deinococcus radiodurans
Macromolecule	HYDROLASE DR0930 (protein)
Unique Ligands	ZN

Explore in 3D

3HK5 \| pdb_00003hk5	Download File View File

Crystal structure of uronate isomerase from Bacillus halodurans complexed with zinc and D-Arabinarate

Fedorov, A.A., Fedorov, E.V., Nguyen, T.T., Raushel, F.M., Almo, S.C.

(2009) Biochemistry 48: 8879-8890

Released	2009-08-25
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Halalkalibacterium halodurans C-125
Macromolecule	Uronate isomerase (protein)
Unique Ligands	CL, CO3, RAT, ZN

Explore in 3D

3HK7 \| pdb_00003hk7	Download File View File

Crystal structure of uronate isomerase from Bacillus halodurans complexed with zinc and D-Arabinarate, monoclinic crystal form

Fedorov, A.A., Fedorov, E.V., Nguyen, T.T., Raushel, F.M., Almo, S.C.

(2009) Biochemistry 48: 8879-8890

Released	2009-08-25
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Halalkalibacterium halodurans C-125
Macromolecule	Uronate isomerase (protein)
Unique Ligands	CL, CO3, NA, RAT, ZN

Explore in 3D

3HK8 \| pdb_00003hk8	Download File View File

Crystal structure of uronate isomerase from Bacillus halodurans complexed with zinc and D-Arabinohydroxamate

Fedorov, A.A., Fedorov, E.V., Nguyen, T.T., Raushel, F.M., Almo, S.C.

(2009) Biochemistry 48: 8879-8890

Released	2009-08-25
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Halalkalibacterium halodurans C-125
Macromolecule	Uronate isomerase (protein)
Unique Ligands	CL, CO3, HDL, ZN

Explore in 3D

3HK9 \| pdb_00003hk9	Download File View File

Crystal structure of uronate isomerase from Bacillus halodurans complexed with zinc and D-Glucuronate

Fedorov, A.A., Fedorov, E.V., Nguyen, T.T., Raushel, F.M., Almo, S.C.

(2009) Biochemistry 48: 8879-8890

Released	2009-08-25
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Halalkalibacterium halodurans C-125
Macromolecule	Uronate isomerase (protein)
Unique Ligands	CL, CO3, REL, ZN

Explore in 3D

3HKA \| pdb_00003hka	Download File View File

Crystal structure of uronate isomerase from Bacillus halodurans complexed with zinc and D-Fructuronate

Fedorov, A.A., Fedorov, E.V., Nguyen, T.T., Raushel, F.M., Almo, S.C.

(2009) Biochemistry 48: 8879-8890

Released	2009-08-25
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Halalkalibacterium halodurans C-125
Macromolecule	Uronate isomerase (protein)
Unique Ligands	CL, CO3, FIX, ZN

Explore in 3D

3ID7 \| pdb_00003id7	Download File View File

Crystal structure of renal dipeptidase from Streptomyces coelicolor A3(2)

Fedorov, A.A., Fedorov, E.V., Cummings, J., Raushel, F.M., Almo, S.C.

(2010) Biochemistry 49: 611-622

Released	2010-01-12
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Streptomyces coelicolor
Macromolecule	Dipeptidase (protein)
Unique Ligands	CL, ZN

Explore in 3D

3ISI \| pdb_00003isi	Download File View File

Crystal structure of Sco3058 with bound inhibitor L-Ala-L-Asp Phosphinodipeptide

Nguyen, T.T.

To be published

Released	2010-08-04
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Streptomyces coelicolor
Macromolecule	renal dipeptidase (protein)
Unique Ligands	B88, ZN

Explore in 3D

3ITC \| pdb_00003itc	Download File View File

Crystal structure of Sco3058 with bound citrate and glycerol

Nguyen, T.T., Cummings, J.A., Tsai, C.-L., Barondeau, D.P., Raushel, F.M.

(2010) Biochemistry 49: 611-622

Released	2010-02-02
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Streptomyces coelicolor
Macromolecule	renal dipeptidase (protein)
Unique Ligands	CIT, GOL, ZN

Explore in 3D

3K5X \| pdb_00003k5x	Download File View File

Crystal structure of dipeptidase from Streptomics coelicolor complexed with phosphinate pseudodipeptide L-Ala-D-Asp at 1.4A resolution.

Fedorov, A.A., Fedorov, E.V., Cummings, J., Raushel, F.M., Almo, S.C.

(2010) Biochemistry 49: 611-622

Released	2010-01-12
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Streptomyces coelicolor
Macromolecule	Dipeptidase (protein)
Unique Ligands	P8D, ZN

Explore in 3D

3MDJ \| pdb_00003mdj	Download File View File

ER Aminopeptidase, ERAP1, Bound to the Zinc Aminopeptidase Inhibitor, Bestatin

Nguyen, T.T., Stern, L.J.

(2011) Nat Struct Mol Biol 18: 604-613

Released	2011-03-30
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Homo sapiens
Macromolecule	Endoplasmic reticulum aminopeptidase 1 (protein)
Unique Ligands	BES, NAG, ZN
Unique branched monosaccharides	BMA, MAN, NAG

Explore in 3D

3TID \| pdb_00003tid	Download File View File

Crystal structure of the LCMV derived peptide GP34 in complex with the murine mhc class I H-2 Kb

Nguyen, T.T., Shen, Z.T., Stern, L.J.

(2013) J Immunol 191: 5139-5152

Released	2012-08-22
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Homo sapiens Mammarenavirus choriomeningitidis Mus musculus
Macromolecule	Beta-2-microglobulin (protein) H-2 class I histocompatibility antigen, K-B alpha chain (protein) LCMV derived octamer peptide (protein)
Unique Ligands	ACT

Explore in 3D

3TIE \| pdb_00003tie	Download File View File

Crystal structure of the vaccinia derived peptide A11R in complex with the murine MHC CLASS I H-2 KB

Nguyen, T.T., Shen, Z.T., Stern, L.J.

(2013) J Immunol 191: 5139-5152

Released	2012-08-22
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens Mus musculus Vaccinia virus
Macromolecule	Beta-2-microglobulin (protein) H-2 class I histocompatibility antigen, K-B alpha chain (protein) Vaccinia derived octamer peptide (protein)

Explore in 3D

4DH6 \| pdb_00004dh6	Download File View File

Structure of Bace-1 (Beta-Secretase) in Complex with (2R)-N-((2S,3R)-1-(benzo[d][1,3]dioxol-5-yl)-3-hydroxy-4-((S)-6'-neopentyl-3',4'-dihydrospiro[cyclobutane-1,2'-pyrano[2,3-b]pyridine]-4'-ylamino)butan-2-yl)-2-methoxypropanamide

Sickmier, E.A.

(2012) J Med Chem 55: 9009-9024

Released	2012-04-18
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	0KN, GOL, IOD

Explore in 3D

4DI2 \| pdb_00004di2	Download File View File

Crystal structure of BACE1 in complex with hydroxyethylamine inhibitor 37

Whittington, D.A., Long, A.M.

(2012) J Med Chem 55: 9025-9044

Released	2012-10-10
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	0K9, GOL

Explore in 3D

4IO9 \| pdb_00004io9	Download File View File

Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Han, S., Marr, E.S.

(2013) Bioorg Med Chem Lett 23: 1727-1731

Released	2013-03-06
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Deinococcus radiodurans
Macromolecule	Unique protein chains: 28 Unique nucleic acid chains: 2
Unique Ligands	1F2, MG

Explore in 3D

4IOA \| pdb_00004ioa	Download File View File

Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Han, S., Marr, E.S.

(2013) Bioorg Med Chem Lett 23: 1727-1731

Released	2013-03-06
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Deinococcus radiodurans
Macromolecule	Unique protein chains: 28 Unique nucleic acid chains: 2
Unique Ligands	1F3, MG

Explore in 3D

4IOC \| pdb_00004ioc	Download File View File

Crystal structure of compound 4f bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Han, S., Marr, E.S.

(2013) Bioorg Med Chem Lett 23: 1727-1731

Released	2013-03-06
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Deinococcus radiodurans
Macromolecule	Unique protein chains: 28 Unique nucleic acid chains: 2
Unique Ligands	1F4, MG