RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Nathanson, K.L."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 54 Structures.

Refinements

Structure Determination Methodology

experimental (54)

Scientific Name of Source Organism

	Homo sapiens (11)
	Paenibacillus fukuinensis (6)
	Mus musculus (4)
	Penicillium chrysogenum (4)
	Pyrococcus horikoshii (4)
	Escherichia coli (3)
	Paenibacillus polymyxa (3)
	Pyrococcus furiosus (3)
	Tachypleus tridentatus (3)
	Trypanosoma brucei brucei (3)

More...

Taxonomy

	Eukaryota (29)
	Bacteria (16)
	Archaea (7)
	Eukaryota (eukaryotes) (2)

Experimental Method

	X-RAY DIFFRACTION (37)
	SOLUTION NMR (17)

Polymer Entity Type

	Protein (54)
	RNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (7)
	2.0 - 2.5 (14)
	2.5 - 3.0 (11)
	3.0 - 3.5 (2)

Release Date

	1990 - 1994 (4)
	1995 - 1999 (2)
	2000 - 2004 (11)
	2005 - 2009 (11)
	2010 - 2014 (9)
	2015 - 2019 (13)
	2020 - 2024 (4)

Enzyme Classification Name

	Hydrolases (21)
	Transferases (8)
	Oxidoreductases (3)
	Ligases (5)
	Isomerases (2)
	Translocases (2)
	Lyases (1)

Membrane Protein Annotation

OPM (1)

Symmetry Type

	Asymmetric (38)
	Cyclic (17)
	Dihedral (3)

SCOP Classification

	Alpha and beta proteins (a/b) (17)
	All beta proteins (8)
	Alpha and beta proteins (a+b) (10)
	Peptides (2)
	Artifacts (1)
	Small proteins (1)

AllSelected

1 to 25 of 54 Structures

Page 1 of 3

Sort by

Explore in 3D

1AA9 \| pdb_00001aa9	Download File View File

HUMAN C-HA-RAS(1-171)(DOT)GDP, NMR, MINIMIZED AVERAGE STRUCTURE

Ito, Y., Yamasaki, Y., Muto, Y., Kawai, G., Nishimura, S., Miyazawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(1997) Biochemistry 36: 9109-9119

Released	1997-07-29
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	C-HA-RAS (protein)
Unique Ligands	GDP, MG

Explore in 3D

1BQT \| pdb_00001bqt	Download File View File

THREE-DIMENSIONAL STRUCTURE OF HUMAN INSULIN-LIKE GROWTH FACTOR-I (IGF-I) DETERMINED BY 1H-NMR AND DISTANCE GEOMETRY, 6 STRUCTURES

Sato, A., Nishimura, S., Ohkubo, T., Kyogoku, Y., Koyama, S., Kobayashi, M., Yasuda, T., Kobayashi, Y.

(1993) Int J Pept Protein Res 41: 433-440

Released	1999-05-18
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	INSULIN-LIKE GROWTH FACTOR-I (protein)

Explore in 3D

1GIH \| pdb_00001gih	Download File View File

HUMAN CYCLIN DEPENDENT KINASE 2 COMPLEXED WITH THE CDK4 INHIBITOR

Ikuta, M., Nishimura, S.

(2001) J Biological Chem 276: 27548-27554

Released	2002-02-06
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	CELL DIVISION PROTEIN KINASE 2 (protein)
Unique Ligands	1PU

Explore in 3D

1GII \| pdb_00001gii	Download File View File

HUMAN CYCLIN DEPENDENT KINASE 2 COMPLEXED WITH THE CDK4 INHIBITOR

Ikuta, M., Nishimura, S.

(2001) J Biological Chem 276: 27548-27554

Released	2002-02-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	CELL DIVISION PROTEIN KINASE 2 (protein)
Unique Ligands	1PU

Explore in 3D

1GIJ \| pdb_00001gij	Download File View File

HUMAN CYCLIN DEPENDENT KINASE 2 COMPLEXED WITH THE CDK4 INHIBITOR

Ikuta, M., Nishimura, S.

(2002) J Biological Chem 276: 27548-27554

Released	2002-02-06
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	CELL DIVISION PROTEIN KINASE 2 (protein)
Unique Ligands	2PU

Explore in 3D

1IQ8 \| pdb_00001iq8	Download File View File

Crystal Structure of archaeosine tRNA-guanine transglycosylase from Pyrococcus horikoshii

Ishitani, R., Nureki, O., Fukai, S., Kijimoto, T., Nameki, N., Watanabe, M., Kondo, H., Sekine, M., Okada, N., Nishimura, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2002) J Mol Biology 318: 665-677

Released	2002-05-22
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Pyrococcus horikoshii
Macromolecule	ARCHAEOSINE TRNA-GUANINE TRANSGLYCOSYLASE (protein)
Unique Ligands	MG, ZN

Explore in 3D

1IT7 \| pdb_00001it7	Download File View File

Crystal structure of archaeosine tRNA-guanine transglycosylase complexed with guanine

Ishitani, R., Nureki, O., Fukai, S., Kijimoto, T., Nameki, N., Watanabe, M., Kondo, H., Sekine, M., Okada, N., Nishimura, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2002) J Mol Biology 318: 665-677

Released	2002-05-22
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Pyrococcus horikoshii
Macromolecule	Archaeosine tRNA-guanine transglycosylase (protein)
Unique Ligands	GUN, MG, ZN

Explore in 3D

1IT8 \| pdb_00001it8	Download File View File

Crystal structure of archaeosine tRNA-guanine transglycosylase from Pyrococcus horikoshii complexed with archaeosine precursor, preQ0

Ishitani, R., Nureki, O., Fukai, S., Kijimoto, T., Nameki, N., Watanabe, M., Kondo, H., Sekine, M., Okada, N., Nishimura, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2002) J Mol Biology 318: 665-677

Released	2002-05-22
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Pyrococcus horikoshii
Macromolecule	archaeosine tRNA-guanine transglycosylase (protein)
Unique Ligands	MG, PQ0, ZN

Explore in 3D

1ITC \| pdb_00001itc	Download File View File

Beta-Amylase from Bacillus cereus var. mycoides Complexed with Maltopentaose

Miyake, H., Kurisu, G., Kusunoki, M., Nishimura, S., Kitamura, S., Nitta, Y.

(2003) Biochemistry 42: 5574-5581

Released	2003-05-27
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Bacillus cereus
Macromolecule	Beta-Amylase (protein)
Unique Ligands	ACY, CA, SO4
Unique branched monosaccharides	GLC

Explore in 3D

1IWC \| pdb_00001iwc	Download File View File

TFE-induded structure of the N-terminal domain of pig gastric H/K-ATPase

Fujitani, N., Kanagawa, M., Aizawa, T., Ohkubo, T., Kaya, S., Demura, M., Kawano, K., Taniguchi, K., Nitta, K.

(2003) Biochem Biophys Res Commun 300: 223-229

Released	2002-11-27
Method	SOLUTION NMR
Organisms	Sus scrofa
Macromolecule	gastric H/K-ATPase (protein)

Explore in 3D

1IWF \| pdb_00001iwf	Download File View File

Solution structure of the N-terminal domain of pig gastric H/K-ATPase

Fujitani, N., Kanagawa, M., Aizawa, T., Ohkubo, T., Kaya, S., Demura, M., Kawano, K., Taniguchi, K., Nitta, K.

(2003) Biochem Biophys Res Commun 300: 223-229

Released	2002-11-27
Method	SOLUTION NMR
Organisms	Sus scrofa
Macromolecule	gastric H/K-ATPase (protein)

Explore in 3D

1J18 \| pdb_00001j18	Download File View File

Crystal Structure of a Beta-Amylase from Bacillus cereus var. mycoides Cocrystallized with Maltose

Miyake, H., Kurisu, G., Kusunoki, M., Nishimura, S., Kitamura, S., Nitta, Y.

(2003) Biochemistry 42: 5574-5581

Released	2003-05-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bacillus cereus
Macromolecule	Beta-amylase (protein)
Unique Ligands	ACY, CA, SO4
Unique branched monosaccharides	BGC, GLC

Explore in 3D

1J2B \| pdb_00001j2b	Download File View File

Crystal Structure Of Archaeosine tRNA-Guanine Transglycosylase Complexed With lambda-form tRNA(Val)

Ishitani, R., Nureki, O., Nameki, N., Okada, N., Nishimura, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2003) Cell 113: 383-394

Released	2003-05-27
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Pyrococcus horikoshii
Macromolecule	Archaeosine tRNA-guanine transglycosylase (protein) tRNA(Val) (nucleic acid)
Unique Ligands	MG, ZN

Explore in 3D

1Q21 \| pdb_00001q21	Download File View File

CRYSTAL STRUCTURES AT 2.2 ANGSTROMS RESOLUTION OF THE CATALYTIC DOMAINS OF NORMAL RAS PROTEIN AND AN ONCOGENIC MUTANT COMPLEXED WITH GSP

Kim, S.-H.

(1991) J Mol Biology 217: 503-516

Released	1992-07-15
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	C-H-RAS P21 PROTEIN CATALYTIC DOMAIN (protein)
Unique Ligands	GDP, MG

Explore in 3D

1TVO \| pdb_00001tvo	Download File View File

The structure of ERK2 in complex with a small molecule inhibitor

Kinoshita, T.

(2005) Biochem Biophys Res Commun 336: 357-363

Released	2005-09-13
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Mitogen-activated protein kinase 1 (protein)
Unique Ligands	FRZ

Explore in 3D

1VBM \| pdb_00001vbm	Download File View File

Crystal structure of the Escherichia coli tyrosyl-tRNA synthetase complexed with Tyr-AMS

Kobayashi, T., Sakamoto, K., Takimura, T., Kamata, K., Sekine, R., Nishimura, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2005) J Mol Biology 346: 105-117

Released	2005-01-25
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli
Macromolecule	Tyrosyl-tRNA synthetase (protein)
Unique Ligands	SO4, YSA

Explore in 3D

1VBN \| pdb_00001vbn	Download File View File

Escherichia coli tyrosyl-tRNA synthetase mutant complexed with Tyr-AMS

Kobayashi, T., Sakamoto, K., Takimura, T., Kamata, K., Sekine, R., Nishimura, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2005) Proc Natl Acad Sci U S A 102: 1366-1371

Released	2005-01-25
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli
Macromolecule	Tyrosyl-tRNA synthetase (protein)
Unique Ligands	YSA

Explore in 3D

1WQ3 \| pdb_00001wq3	Download File View File

Escherichia coli tyrosyl-tRNA synthetase mutant complexed with 3-iodo-L-tyrosine

Kobayashi, T., Sakamoto, K., Nureki, O., Takimura, T., Kamata, K., Sekine, R., Nishimura, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2005) Proc Natl Acad Sci U S A 102: 1366-1371

Released	2005-01-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli str. K-12 substr. W3110
Macromolecule	Tyrosyl-tRNA synthetase (protein)
Unique Ligands	IYR

Explore in 3D

1WQ4 \| pdb_00001wq4	Download File View File

Escherichia coli tyrosyl-tRNA synthetase mutant complexed with L-tyrosine

Kobayashi, T., Sakamoto, K., Nureki, O., Takimura, T., Kamata, K., Sekine, R., Nishimura, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2005) Proc Natl Acad Sci U S A 102: 1366-1371

Released	2005-01-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli str. K-12 substr. W3110
Macromolecule	Tyrosyl-tRNA synthetase (protein)
Unique Ligands	TYR