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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Muramatsu, H."

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This query matches 8 Structures.

Refinements

Structure Determination Methodology

experimental (8)

Scientific Name of Source Organism

	Pseudomonas syringae pv. tomato (3)
	Homo sapiens (2)
	Mus musculus (2)
	Bos taurus (1)
	Chlamydomonas reinhardtii (1)
	Human immunodeficiency virus (1)
	Human immunodeficiency virus 1 (1)
	Rattus norvegicus (1)
	Severe acute respiratory syndrome coronavirus 2 (1)
	unidentified (1)

Taxonomy

	Eukaryota (5)
	Bacteria (3)
	Riboviria (3)
	unclassified sequences (1)

Experimental Method

	ELECTRON MICROSCOPY (4)
	X-RAY DIFFRACTION (4)

Polymer Entity Type

Protein (8)

Refinement Resolution (Å)

	1.5 - 2.0 (4)
	2.5 - 3.0 (1)
	3.5 - 4.0 (2)
	4.0 - 4.5 (1)

Release Date

	2005 - 2009 (3)
	2020 - 2024 (5)

Enzyme Classification Name

	Oxidoreductases (3)
	Hydrolases (1)
	Lyases (1)

Membrane Protein Annotation

	MemProtMD (1)
	PDBTM (1)
	mpstruc (1)

Symmetry Type

	Cyclic (6)
	Asymmetric (2)

SCOP Classification

Alpha and beta proteins (a/b) (3)

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1 to 8 of 8 Structures

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1WTJ \| pdb_00001wtj	Download File View File

Crystal Structure of delta1-piperideine-2-carboxylate reductase from Pseudomonas syringae pvar.tomato

Goto, M., Muramatsu, H., Mihara, H., Kurihara, T., Esaki, N., Omi, R., Miyahara, I., Hirotsu, K.

(2005) J Biological Chem 280: 40875-40884

Released	2005-10-04
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Pseudomonas syringae pv. tomato
Macromolecule	ureidoglycolate dehydrogenase (protein)

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2CWF \| pdb_00002cwf	Download File View File

Crystal Structure of delta1-piperideine-2-carboxylate reductase from Pseudomonas syringae complexed with NADPH

Goto, M., Muramatsu, H., Mihara, H., Kurihara, T., Esaki, N., Omi, R., Miyahara, I., Hirotsu, K.

(2005) J Biological Chem 280: 40875-40884

Released	2005-10-04
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Pseudomonas syringae pv. tomato
Macromolecule	delta1-piperideine-2-carboxylate reductase (protein)
Unique Ligands	NDP

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2CWH \| pdb_00002cwh	Download File View File

Crystal Structure of delta1-piperideine-2-carboxylate reductase from Pseudomonas syringae complexed with NADPH and pyrrole-2-carboxylate

Goto, M., Muramatsu, H., Mihara, H., Kurihara, T., Esaki, N., Omi, R., Miyahara, I., Hirotsu, K.

(2005) J Biological Chem 280: 40875-40884

Released	2005-10-04
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Pseudomonas syringae pv. tomato
Macromolecule	delta1-piperideine-2-carboxylate reductase (protein)
Unique Ligands	NDP, PYC

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7YQA \| pdb_00007yqa	Download File View File

Crystal structure of D-threonine aldolase from Chlamydomonas reinhardtii

Hirato, Y., Goto, M., Mizobuchi, T., Muramatsu, H., Tanigawa, M., Nishimura, K.

(2023) Acta Crystallogr F Struct Biol Commun 79: 31-37

Released	2023-02-15
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Chlamydomonas reinhardtii
Macromolecule	D-threonine aldolase (protein)
Unique Ligands	MG

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8DTK \| pdb_00008dtk	Download File View File

Structure of RBD directed antibody DH1047 in complex with SARS-CoV-2 spike: Local refinement of RBD-Fab interace

May, A.J., Manne, K., Acharya, P.

(2023) bioRxiv

Released	2023-08-02
Method	ELECTRON MICROSCOPY 3.77 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	DH1047 Fab Heavy Chain (protein) DH1047 Fab Light Chain (protein) Spike protein S1 (protein)
Unique Ligands	NAG

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8DTO \| pdb_00008dto	Download File View File

Vaccine elicited Antibody MU89 bound to CH848.D949.10.17_N133D_N138T.DS.SOSIP.664 HIV-1 Env trimer

Stalls, V., Acharya, P.

(2024) Cell Host Microbe 32: 693-709.e7

Released	2023-04-19
Method	ELECTRON MICROSCOPY 3.57 Å
Organisms	Human immunodeficiency virus Mus musculus
Macromolecule	CH848.3.D0949.10.17chim.6R.DS.SOSIP.664_N133D_N138T gp120 (protein) Envelope Glycoprotein gp141 (protein) MU89 Heavy Chain (protein) MU89 Light Chain (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

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8DY6 \| pdb_00008dy6	Download File View File

Vaccine elicited Antibody MU89+S27Y bound to CH848.D949.10.17_N133D_N138T.DS.SOSIP.664 HIV-1 Env trimer

Stalls, V., Acharya, P.

(2024) Cell Host Microbe 32: 693-709.e7

Released	2023-04-19
Method	ELECTRON MICROSCOPY 4.32 Å
Organisms	Human immunodeficiency virus 1 Mus musculus
Macromolecule	Envelope glycoprotein gp160 (protein) MU89+S27Y Heavy Chain (protein) MU89+S27Y Light Chain (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

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8GW8 \| pdb_00008gw8	Download File View File

the human PTH1 receptor bound to an intracellular biased agonist

Kobayashi, K., Kusakizako, T., Okamoto, H.H., Nureki, O.

(2023) Nature 618: 1085-1093

Released	2023-06-14
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Bos taurus Homo sapiens Rattus norvegicus unidentified
Macromolecule	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 (protein) Isoform Gnas-2 of Guanine nucleotide-binding protein G(s) subunit alpha isoforms short (protein) Nanobody-35 (protein) Parathyroid hormone/parathyroid hormone-related peptide receptor (protein)
Unique Ligands	KHF

1 to 8 of 8 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1WTJ | pdb_00001wtj

Crystal Structure of delta1-piperideine-2-carboxylate reductase from Pseudomonas syringae pvar.tomato

2CWF | pdb_00002cwf

Crystal Structure of delta1-piperideine-2-carboxylate reductase from Pseudomonas syringae complexed with NADPH

2CWH | pdb_00002cwh

Crystal Structure of delta1-piperideine-2-carboxylate reductase from Pseudomonas syringae complexed with NADPH and pyrrole-2-carboxylate

7YQA | pdb_00007yqa

Crystal structure of D-threonine aldolase from Chlamydomonas reinhardtii

8DTK | pdb_00008dtk

Structure of RBD directed antibody DH1047 in complex with SARS-CoV-2 spike: Local refinement of RBD-Fab interace

8DTO | pdb_00008dto

Vaccine elicited Antibody MU89 bound to CH848.D949.10.17_N133D_N138T.DS.SOSIP.664 HIV-1 Env trimer

8DY6 | pdb_00008dy6

Vaccine elicited Antibody MU89+S27Y bound to CH848.D949.10.17_N133D_N138T.DS.SOSIP.664 HIV-1 Env trimer

8GW8 | pdb_00008gw8

the human PTH1 receptor bound to an intracellular biased agonist

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1WTJ | pdb_00001wtj

2CWF | pdb_00002cwf

2CWH | pdb_00002cwh

7YQA | pdb_00007yqa

8DTK | pdb_00008dtk

8DTO | pdb_00008dto

8DY6 | pdb_00008dy6

8GW8 | pdb_00008gw8