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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Ludes-Meyers, J."

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Search Summary

This query matches 91 Structures.

Refinements

Structure Determination Methodology

experimental (91)

Scientific Name of Source Organism

	Streptomyces olivaceoviridis (25)
	Phanerodontia chrysosporium (15)
	Homo sapiens (8)
	uncultured bacterium (8)
	Streptomyces avermitilis MA-4680 = NBRC 14893 (6)
	Streptomyces coelicolor A3(2) (5)
	Acidobacterium capsulatum ATCC 51196 (3)
	Arabidopsis thaliana (3)
	Cellvibrio japonicus Ueda107 (3)
	Coprinopsis cinerea (3)

More...

Taxonomy

	Bacteria (59)
	Eukaryota (35)
	other sequences (2)

Experimental Method

	X-RAY DIFFRACTION (87)
	ELECTRON MICROSCOPY (2)
	NEUTRON DIFFRACTION (2)
	SOLUTION NMR (2)

Polymer Entity Type

Protein (91)

Refinement Resolution (Å)

	0.5 - 1.0 (6)
	1.0 - 1.5 (12)
	1.5 - 2.0 (38)
	2.0 - 2.5 (26)
	2.5 - 3.0 (8)
	3.0 - 3.5 (1)

Release Date

	2000 - 2004 (14)
	2005 - 2009 (17)
	2010 - 2014 (25)
	2015 - 2019 (21)
	2020 - 2024 (14)

Enzyme Classification Name

	Hydrolases (61)
	Isomerases (3)

Membrane Protein Annotation

	PDBTM (2)
	MemProtMD (1)

Symmetry Type

	Asymmetric (74)
	Cyclic (22)
	Dihedral (2)

SCOP Classification

	All beta proteins (24)
	Alpha and beta proteins (a/b) (27)
	Artifacts (6)
	Alpha and beta proteins (a+b) (3)
	All alpha proteins (1)

AllSelected

1 to 25 of 91 Structures

Page 1 of 4

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1ISV \| pdb_00001isv	Download File View File

Crystal structure of xylanase from Streptomyces olivaceoviridis E-86 complexed with xylose

Fujimoto, Z., Kuno, A., Kaneko, S., Kobayashi, H., Kusakabe, I., Mizuno, H.

(2002) J Mol Biology 316: 65-78

Released	2002-02-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Streptomyces olivaceoviridis
Macromolecule	endo-1,4-beta-D-xylanase (protein)
Unique Ligands	XYP

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1ISW \| pdb_00001isw	Download File View File

Crystal structure of xylanase from Streptomyces olivaceoviridis E-86 complexed with xylobiose

Fujimoto, Z., Kuno, A., Kaneko, S., Kobayashi, H., Kusakabe, I., Mizuno, H.

(2002) J Mol Biology 316: 65-78

Released	2002-02-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Streptomyces olivaceoviridis
Macromolecule	endo-1,4-beta-D-xylanase (protein)
Unique Ligands	XYP
Unique branched monosaccharides	XYP

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1ISX \| pdb_00001isx	Download File View File

Crystal structure of xylanase from Streptomyces olivaceoviridis E-86 complexed with xylotriose

Fujimoto, Z., Kuno, A., Kaneko, S., Kobayashi, H., Kusakabe, I., Mizuno, H.

(2002) J Mol Biology 316: 65-78

Released	2002-02-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Streptomyces olivaceoviridis
Macromolecule	endo-1,4-beta-D-xylanase (protein)
Unique Ligands	XYP
Unique branched monosaccharides	XYP

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1ISY \| pdb_00001isy	Download File View File

Crystal structure of xylanase from Streptomyces olivaceoviridis E-86 complexed with glucose

Fujimoto, Z., Kuno, A., Kaneko, S., Kobayashi, H., Kusakabe, I., Mizuno, H.

(2002) J Mol Biology 316: 65-78

Released	2002-02-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Streptomyces olivaceoviridis
Macromolecule	endo-1,4-beta-D-xylanase (protein)
Unique Ligands	BGC

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1ISZ \| pdb_00001isz	Download File View File

Crystal structure of xylanase from Streptomyces olivaceoviridis E-86 complexed with galactose

Fujimoto, Z., Kuno, A., Kaneko, S., Kobayashi, H., Kusakabe, I., Mizuno, H.

(2002) J Mol Biology 316: 65-78

Released	2002-02-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Streptomyces olivaceoviridis
Macromolecule	endo-1,4-beta-D-xylanase (protein)
Unique Ligands	GAL

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1IT0 \| pdb_00001it0	Download File View File

Crystal structure of xylanase from Streptomyces olivaceoviridis E-86 complexed with lactose

Fujimoto, Z., Kuno, A., Kaneko, S., Kobayashi, H., Kusakabe, I., Mizuno, H.

(2002) J Mol Biology 316: 65-78

Released	2002-02-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Streptomyces olivaceoviridis
Macromolecule	endo-1,4-beta-D-xylanase (protein)
Unique branched monosaccharides	BGC, GAL

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1UAS \| pdb_00001uas	Download File View File

Crystal structure of rice alpha-galactosidase

Fujimoto, Z., Kaneko, S., Momma, M., Kobayashi, H., Mizuno, H.

(2003) J Biological Chem 278: 20313-20318

Released	2003-07-01
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Oryza sativa
Macromolecule	alpha-galactosidase (protein)
Unique Ligands	GLA, GOL, PT, SO4

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1V6U \| pdb_00001v6u	Download File View File

Crystal Structure Of Xylanase From Streptomyces Olivaceoviridis E-86 Complexed With 2(2)-alpha-L-arabinofuranosyl-xylobiose

Fujimoto, Z., Kaneko, S., Kuno, A., Kobayashi, H., Kusakabe, I., Mizuno, H.

(2004) J Biological Chem 279: 9606-9614

Released	2004-04-27
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Streptomyces olivaceoviridis
Macromolecule	endo-1,4-beta-D-xylanase (protein)
Unique Ligands	XYP, XYS
Unique branched monosaccharides	AHR, XYP

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1V6V \| pdb_00001v6v	Download File View File

Crystal Structure Of Xylanase From Streptomyces Olivaceoviridis E-86 Complexed With 3(2)-alpha-L-arabinofuranosyl-xylotriose

Fujimoto, Z., Kaneko, S., Kuno, A., Kobayashi, H., Kusakabe, I., Mizuno, H.

(2004) J Biological Chem 279: 9606-9614

Released	2004-04-27
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Streptomyces olivaceoviridis
Macromolecule	ENDO-1,4-BETA-D-XYLANASE (protein)
Unique Ligands	XYP
Unique branched monosaccharides	AHR, XYP

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1V6W \| pdb_00001v6w	Download File View File

Crystal Structure Of Xylanase From Streptomyces Olivaceoviridis E-86 Complexed With 2(2)-4-O-methyl-alpha-D-glucuronosyl-xylobiose

Fujimoto, Z., Kaneko, S., Kuno, A., Kobayashi, H., Kusakabe, I., Mizuno, H.

(2004) J Biological Chem 279: 9606-9614

Released	2004-04-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Streptomyces olivaceoviridis
Macromolecule	ENDO-1,4-BETA-D-XYLANASE (protein)
Unique Ligands	XYP
Unique branched monosaccharides	GCV, XYP

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1V6X \| pdb_00001v6x	Download File View File

Crystal Structure Of Xylanase From Streptomyces Olivaceoviridis E-86 Complexed With 3(3)-4-O-methyl-alpha-D-glucuronosyl-xylotriose

Fujimoto, Z., Kaneko, S., Kuno, A., Kobayashi, H., Kusakabe, I., Mizuno, H.

(2004) J Biological Chem 279: 9606-9614

Released	2004-04-27
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Streptomyces olivaceoviridis
Macromolecule	ENDO-1,4-BETA-D-XYLANASE (protein)
Unique Ligands	XYP
Unique branched monosaccharides	GCV, XYP

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1V6Y \| pdb_00001v6y	Download File View File

Crystal Structure Of chimeric Xylanase between Streptomyces Olivaceoviridis E-86 FXYN and Cellulomonas fimi Cex

Kaneko, S., Ichinose, H., Fujimoto, Z., Kuno, A., Yura, K., Go, M., Mizuno, H., Kusakabe, I., Kobayashi, H.

(2004) J Biological Chem 279: 26619-26626

Released	2004-09-07
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Cellulomonas fimi Streptomyces olivaceoviridis
Macromolecule	Beta-xylanase,Exoglucanase/xylanase (protein)

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1WKR \| pdb_00001wkr	Download File View File

Crystal structure of aspartic proteinase from Irpex lacteus

Fujimoto, Z., Fujii, Y., Kaneko, S., Kobayashi, H., Mizuno, H.

(2004) J Mol Biology 341: 1227-1235

Released	2004-09-07
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Irpex lacteus Streptomyces argenteolus subsp. toyonakensis
Macromolecule	Polyporopepsin (protein) pepstatin (protein)
Unique Ligands	SO4

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1XYF \| pdb_00001xyf	Download File View File

ENDO-1,4-BETA-XYLANASE FROM STREPTOMYCES OLIVACEOVIRIDIS

Fujimoto, Z., Mizuno, H., Kuno, A., Kusakabe, I.

(2000) J Mol Biology 300: 575-585

Released	2000-05-10
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Streptomyces olivaceoviridis
Macromolecule	ENDO-1,4-BETA-XYLANASE (protein)

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2D1Z \| pdb_00002d1z	Download File View File

Crystal structure of catalytic-site mutant xylanase from Streptomyces olivaceoviridis E-86

Suzuki, R., Kuno, A., Fujimoto, Z., Ito, S., Kawahara, S.I., Kaneko, S., Hasegawa, T., Taira, K.

(2009) J Biochem 146: 61-70

Released	2006-10-10
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Streptomyces olivaceoviridis
Macromolecule	ENDO-1,4-BETA-D-XYLANASE (protein)
Unique Ligands	GOL, SO4

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2D20 \| pdb_00002d20	Download File View File

Crystal structure of michaelis complex of catalytic-site mutant xylanase from Streptomyces olivaceoviridis E-86

Suzuki, R., Kuno, A., Fujimoto, Z., Ito, S., Kawahara, S.I., Kaneko, S., Hasegawa, T., Taira, K.

(2009) J Biochem 146: 61-70

Released	2006-10-10
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Streptomyces olivaceoviridis
Macromolecule	ENDO-1,4-BETA-D-XYLANASE (protein)
Unique Ligands	GOL, NPO
Unique branched monosaccharides	XYS

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2D22 \| pdb_00002d22	Download File View File

Crystal structure of covalent glycosyl-enzyme intermediate of catalytic-site mutant xylanase from Streptomyces olivaceoviridis E-86

Suzuki, R., Kuno, A., Fujimoto, Z., Ito, S., Kawahara, S.I., Kaneko, S., Hasegawa, T., Taira, K.

(2009) J Biochem 146: 61-70

Released	2006-10-10
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Streptomyces olivaceoviridis
Macromolecule	ENDO-1,4-BETA-D-XYLANASE (protein)
Unique Ligands	GOL, SO4
Unique branched monosaccharides	XYS

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2D23 \| pdb_00002d23	Download File View File

Crystal structure of EP complex of catalytic-site mutant xylanase from Streptomyces olivaceoviridis E-86

Suzuki, R., Kuno, A., Fujimoto, Z., Ito, S., Kawahara, S.I., Kaneko, S., Hasegawa, T., Taira, K.

(2009) J Biochem 146: 61-70

Released	2006-10-10
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Streptomyces olivaceoviridis
Macromolecule	ENDO-1,4-BETA-D-XYLANASE (protein)
Unique Ligands	AZI, GOL
Unique branched monosaccharides	XYS

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2D24 \| pdb_00002d24	Download File View File

Crystal structure of ES complex of catalytic-site mutant xylanase from Streptomyces olivaceoviridis E-86

Suzuki, R., Kuno, A., Fujimoto, Z., Ito, S., Kawahara, S.I., Kaneko, S., Hasegawa, T., Taira, K.

(2009) J Biochem 146: 61-70

Released	2006-10-10
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Streptomyces olivaceoviridis
Macromolecule	ENDO-1,4-BETA-D-XYLANASE (protein)
Unique Ligands	GOL, SO4
Unique branched monosaccharides	XYS

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2G3I \| pdb_00002g3i	Download File View File

Structure of S.olivaceoviridis xylanase Q88A/R275A mutant

Diertavitian, S., Kaneko, S., Fujimoto, Z., Kuno, A., Johansson, E., Lo Leggio, L.

(2012) Process Biochem 47: 358-365

Released	2007-03-06
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Streptomyces olivaceoviridis
Macromolecule	Xylanase (protein)
Unique Ligands	PO4

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2G3J \| pdb_00002g3j	Download File View File

Structure of S.olivaceoviridis xylanase Q88A/R275A mutant

Diertavitian, S., Kaneko, S., Fujimoto, Z., Kuno, A., Johansson, E., Lo Leggio, L.

(2012) Process Biochem 47: 358-365

Released	2007-03-06
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Streptomyces olivaceoviridis
Macromolecule	Xylanase (protein)
Unique Ligands	PO4
Unique branched monosaccharides	XYS

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2G4F \| pdb_00002g4f	Download File View File

Structure of S.olivaceoviridis xylanase Q88A/R275A mutant

Diertavitian, S., Kaneko, S., Fujimoto, Z., Kuno, A., Johansson, E., Lo Leggio, L.

(2012) Process Biochem 47: 358-365

Released	2007-03-06
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Streptomyces olivaceoviridis
Macromolecule	Hydrolase (protein)

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2I7T \| pdb_00002i7t	Download File View File

Structure of human CPSF-73

Mandel, C.R., Zhang, H., Tong, L.

(2006) Nature 444: 953-956

Released	2007-01-30
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Cleavage and polyadenylation specificity factor 73 kDa subunit (protein)
Unique Ligands	SO4, ZN

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2I7V \| pdb_00002i7v	Download File View File

Structure of Human CPSF-73

Mandel, C.R., Zhang, H., Tong, L.

(2006) Nature 444: 953-956

Released	2007-01-30
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Cleavage and polyadenylation specificity factor 73 kDa subunit (protein)
Unique Ligands	SO4, ZN