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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Liddle, J."

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Search Summary

This query matches 59 Structures.

Refinements

Structure Determination Methodology

experimental (59)

Scientific Name of Source Organism

	Homo sapiens (45)
	Pseudomonas fluorescens (11)
	Mus musculus (3)
	Human immunodeficiency virus 1 (1)
	synthetic construct (1)

Taxonomy

	Eukaryota (48)
	Bacteria (11)
	Riboviria (1)
	other sequences (1)

Experimental Method

X-RAY DIFFRACTION (59)

Polymer Entity Type

Protein (59)

Refinement Resolution (Å)

	1.0 - 1.5 (6)
	1.5 - 2.0 (38)
	2.0 - 2.5 (10)
	2.5 - 3.0 (2)
	3.0 - 3.5 (3)

Release Date

	2010 - 2014 (7)
	2015 - 2019 (44)
	2020 - 2024 (4)
	2025 - 2029 (4)

Enzyme Classification Name

	Oxidoreductases (22)
	Hydrolases (20)
	Transferases (14)

Symmetry Type

	Asymmetric (55)
	Cyclic (4)

SCOP Classification

	All beta proteins (17)
	Alpha and beta proteins (a+b) (16)
	Multi-domain proteins (alpha and beta) (2)
	All alpha proteins (1)

AllSelected

1 to 25 of 59 Structures

Page 1 of 3

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2XUE \| pdb_00002xue	Download File View File

CRYSTAL STRUCTURE OF JMJD3

Chung, C., Rowland, P., Mosley, J., Thomas, P.J.

(2012) Nature 488: 404

Released	2011-12-28
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	LYSINE-SPECIFIC DEMETHYLASE 6B (protein)
Unique Ligands	AKG, FE, SO4, ZN

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3SRV \| pdb_00003srv	Download File View File

Crystal structure of spleen tyrosine kinase (SYK) in complex with a diaminopyrimidine carboxamide inhibitor

Somers, D.O., Neu, M.

(2011) Bioorg Med Chem Lett 21: 6188-6194

Released	2011-09-21
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase SYK (protein)
Unique Ligands	GOL, S19

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4ASK \| pdb_00004ask	Download File View File

CRYSTAL STRUCTURE OF JMJD3 WITH GSK-J1

Chung, C., Mosley, J., Liddle, J.

(2012) Nature 488: 404

Released	2012-07-25
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Homo sapiens
Macromolecule	LYSINE-SPECIFIC DEMETHYLASE 6B (protein)
Unique Ligands	CO, K0I, ZN

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4AWI \| pdb_00004awi	Download File View File

Human Jnk1alpha kinase with 4-phenyl-7-azaindole IKK2 inhibitor.

Chung, C., Vicentini, G., Liddle, J., Bamborough, P.

(2012) Bioorg Med Chem Lett 22: 5222

Released	2013-05-01
Method	X-RAY DIFFRACTION 1.91 Å
Organisms	Homo sapiens
Macromolecule	MITOGEN-ACTIVATED PROTEIN KINASE 8 (protein)
Unique Ligands	AQ2, SO4

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4EYU \| pdb_00004eyu	Download File View File

The free structure of the mouse C-terminal domain of KDM6B

Cheng, Z.J., Patel, D.J.

(2012) Nature 488: 404-408

Released	2012-08-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Mus musculus
Macromolecule	Lysine-specific demethylase 6B (protein)
Unique Ligands	NI, OGA, ZN

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4EZ4 \| pdb_00004ez4	Download File View File

free KDM6B structure

Cheng, Z.J., Patel, D.J.

(2012) Nature 488: 404-408

Released	2012-08-08
Method	X-RAY DIFFRACTION 2.99 Å
Organisms	Mus musculus
Macromolecule	Lysine-specific demethylase 6B (protein)
Unique Ligands	NI, OGA, ZN

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4EZH \| pdb_00004ezh	Download File View File

the crystal structure of KDM6B bound with H3K27me3 peptide

Cheng, Z.J., Patel, D.J.

(2012) Nature 488: 404-408

Released	2012-08-08
Method	X-RAY DIFFRACTION 2.52 Å
Organisms	Mus musculus synthetic construct
Macromolecule	Lysine-specific demethylase 6B (protein) SYNTHESIZED methylation peptide (protein)
Unique Ligands	NI, OGA, ZN

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4X8C \| pdb_00004x8c	Download File View File

Crystal structure of human peptidylarginine deiminase type4 (PAD4) in complex with GSK147

Lewis, H.D., Bax, B.D., Chung, C.-W., Polyakova, O., Thorpe, J.

(2015) Nat Chem Biol 11: 189-191

Released	2015-01-28
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	Protein-arginine deiminase type-4 (protein)
Unique Ligands	3YZ, CA

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4X8G \| pdb_00004x8g	Download File View File

Crystal structure of human peptidylarginine deiminase type4 (PAD4) in complex with GSK199

Lewis, H.D., Bax, B.D., Chung, C.-W., Polyakova, O., Thorpe, J.

(2015) Nat Chem Biol 11: 189-191

Released	2015-01-28
Method	X-RAY DIFFRACTION 3.29 Å
Organisms	Homo sapiens
Macromolecule	Protein-arginine deiminase type-4 (protein)
Unique Ligands	3Z0, CA

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4YJO \| pdb_00004yjo	Download File View File

THE KINASE DOMAIN OF HUMAN SPLEEN TYROSINE (SYK) IN COMPLEX WITH GTC000222

Somers, D.O., Neu, M.

(2011) Bioorg Med Chem Lett 21: 6188-6194

Released	2015-09-30
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase SYK (protein)
Unique Ligands	4DF, GOL

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4YJP \| pdb_00004yjp	Download File View File

THE KINASE DOMAIN OF HUMAN SPLEEN TYROSINE (SYK) IN COMPLEX WITH GTC000223

Somers, D.O., Neu, M.

(2011) Bioorg Med Chem Lett 21: 6188-6194

Released	2015-09-30
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase SYK (protein)
Unique Ligands	4DL, DMS

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4YJQ \| pdb_00004yjq	Download File View File

SYK kinase domain in complex with inhibitor GTC000224

Somers, D.O., Neu, M., Stuckey, J.

(2011) Bioorg Med Chem Lett 21: 6188-6194

Released	2015-09-30
Method	X-RAY DIFFRACTION 1.34 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase SYK (protein)
Unique Ligands	4DK

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4YJR \| pdb_00004yjr	Download File View File

SYK kinase domain in complex with inhibitor GTC000225

Somers, D.O., Neu, M., Stuckey, J.

(2011) Bioorg Med Chem Lett 21: 6188-6194

Released	2015-09-30
Method	X-RAY DIFFRACTION 1.32 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase SYK (protein)
Unique Ligands	4DJ

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4YJS \| pdb_00004yjs	Download File View File

THE KINASE DOMAIN OF HUMAN SPLEEN TYROSINE (SYK) IN COMPLEX WITH GTC000226

Somers, D.O.

(2011) Bioorg Med Chem Lett 21: 6188-6194

Released	2015-09-30
Method	X-RAY DIFFRACTION 2.22 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase SYK (protein)
Unique Ligands	4DN

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4YJT \| pdb_00004yjt	Download File View File

THE KINASE DOMAIN OF HUMAN SPLEEN TYROSINE (SYK) IN COMPLEX WITH GTC000233

Somers, D.O., Neu, M., Stuckey, J.

(2011) Bioorg Med Chem Lett 21: 6188-6194

Released	2015-09-30
Method	X-RAY DIFFRACTION 1.52 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase SYK (protein)
Unique Ligands	4DQ, GOL

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4YJU \| pdb_00004yju	Download File View File

THE KINASE DOMAIN OF HUMAN SPLEEN TYROSINE (SYK) IN COMPLEX WITH GTC000249

Somers, D.O., Neu, M., Stuckey, J.

(2011) Bioorg Med Chem Lett 21: 6188-6194

Released	2015-09-30
Method	X-RAY DIFFRACTION 1.67 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase SYK (protein)
Unique Ligands	4DO

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4YJV \| pdb_00004yjv	Download File View File

THE KINASE DOMAIN OF HUMAN SPLEEN TYROSINE (SYK) IN COMPLEX WITH GTC000250

Somers, D.O., Neu, M., Stuckey, J.

To be published

Released	2015-10-14
Method	X-RAY DIFFRACTION 1.652 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase SYK (protein)
Unique Ligands	4DT

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5FN0 \| pdb_00005fn0	Download File View File

Crystal structure of Pseudomonas fluorescens kynurenine-3- monooxygenase (KMO) in complex with GSK180

Mole, D.J., Webster, S.P., Uings, I., Zheng, X., Binnie, M., Wilson, K., Hutchinson, J.P., Mirguet, O., Walker, A., Beaufils, B., Ancellin, N., Trottet, L., Beneton, V., Mowat, C.G., Wilkinson, M., Rowland, P., Haslam, C., McBride, A., Homer, N.Z.M., Baily, J.E., Sharp, M.G.F., Garden, O.J., Hughes, J., Howie, S.E.M., Holmes, D., Liddle, J., Iredale, J.P.

(2016) Nat Med 22: 202

Released	2016-01-13
Method	X-RAY DIFFRACTION 3.19 Å
Organisms	Pseudomonas fluorescens
Macromolecule	KYNURENINE 3-MONOOXYGENASE (protein)
Unique Ligands	FAD, JHY

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5FP3 \| pdb_00005fp3	Download File View File

Cell penetrant inhibitors of the JMJD2 (KDM4) and JARID1 (KDM5) families of histone lysine demethylases

Chung, C.

(2016) J Med Chem 59: 1357

Released	2016-01-27
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens
Macromolecule	HUMAN LYSINE-SPECIFIC DEMETHYLASE 6B, JMJD3 (protein)
Unique Ligands	BCN, CO, MG, YC8, ZN

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5FP4 \| pdb_00005fp4	Download File View File

Crystal structure of human KDM4D in complex with 3-(4- phenylbutanamido)pyridine-4-carboxylic acid

Chung, C.

(2016) J Med Chem 59: 1357

Released	2016-01-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	LYSINE-SPECIFIC DEMETHYLASE 4D (protein)
Unique Ligands	FE2, GOL, SO4, YC8, ZN

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5FP8 \| pdb_00005fp8	Download File View File

Crystal structure of human KDM4D in complex with 3-4-methylthiophen-2- ylmethylaminopyridine-4-carboxylic acid

Chung, C.

(2016) J Med Chem 59: 1357

Released	2016-01-27
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Homo sapiens
Macromolecule	LYSINE-SPECIFIC DEMETHYLASE 4D (protein)
Unique Ligands	AUY, CO, SO4, ZN

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5FP9 \| pdb_00005fp9	Download File View File

Crystal structure of human KDM4D in complex with 3-aminopyridine-4- carboxylic acid

Chung, C.

(2016) J Med Chem 59: 1357

Released	2016-01-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	HUMAN LYSINE-SPECIFIC DEMETHYLASE 4D JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 3D, JUMONJI DOMAIN-CONTAINING PROTEIN 2D, JMJD2D (protein)
Unique Ligands	4SV, CO, GOL, SO4, ZN

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5FPA \| pdb_00005fpa	Download File View File

Crystal structure of human KDM4D in complex with 3H,4H-pyrido-3,4-d- pyrimidin-4-one

Chung, C.

(2016) J Med Chem 59: 1357

Released	2016-01-27
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Homo sapiens
Macromolecule	LYSINE-SPECIFIC DEMETHYLASE 4D (protein)
Unique Ligands	CO, N5J, SO4, ZN

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5FPB \| pdb_00005fpb	Download File View File

Crystal structure of human KDM4D in complex with 2-1H-pyrazol-4-yloxy- 3H,4H-pyrido-3,4-d-pyrimidin-4-one

Chung, C.

(2016) J Med Chem 59: 1357

Released	2016-01-27
Method	X-RAY DIFFRACTION 1.91 Å
Organisms	Homo sapiens
Macromolecule	LYSINE-SPECIFIC DEMETHYLASE 4D (protein)
Unique Ligands	CO, HA6, SO4, ZN