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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Lelieveld, L.T."

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Search Summary

This query matches 205 Structures.

Refinements

Structure Determination Methodology

experimental (205)

Scientific Name of Source Organism

	Homo sapiens (36)
	Saccharolobus solfataricus (14)
	Saccharolobus solfataricus P2 (12)
	Thermotoga maritima MSB8 (9)
	Streptomyces viridosporus (8)
	Mycobacterium tuberculosis (6)
	Paecilomyces sp. 'thermophila (6)
	Trypanosoma cruzi (6)
	Trypanosoma cruzi strain CL Brener (6)
	Bacillus subtilis subsp. subtilis str. 168 (5)

More...

Taxonomy

	Bacteria (99)
	Eukaryota (76)
	Archaea (34)
	other sequences (3)
	Riboviria (2)

Experimental Method

	X-RAY DIFFRACTION (186)
	ELECTRON MICROSCOPY (18)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (202)
	DNA (3)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (17)
	1.5 - 2.0 (53)
	2.0 - 2.5 (77)
	2.5 - 3.0 (44)
	3.0 - 3.5 (11)
	3.5 - 4.0 (1)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (4)
	2010 - 2014 (105)
	2015 - 2019 (48)
	2020 - 2024 (35)
	2025 - 2029 (12)

Enzyme Classification Name

	Hydrolases (80)
	Transferases (44)
	Oxidoreductases (44)
	Isomerases (9)
	Ligases (5)
	Lyases (2)

Membrane Protein Annotation

OPM (1)

Symmetry Type

	Asymmetric (78)
	Cyclic (87)
	Dihedral (26)
	Tetrahedral (17)
	Helical (1)

SCOP Classification

	All alpha proteins (24)
	Alpha and beta proteins (a/b) (31)
	All beta proteins (9)
	Artifacts (7)
	Small proteins (5)
	Alpha and beta proteins (a+b) (1)
	Coiled coil proteins (1)

AllSelected

1 to 25 of 205 Structures

Page 1 of 9

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1WKQ \| pdb_00001wkq	Download File View File

Crystal Structure of Bacillus subtilis Guanine Deaminase. The first domain-swapped structure in the cytidine deaminase superfamily

Liaw, S.H., Chang, Y.J., Lai, C.T.

(2004) J Biological Chem 279: 35479-35485

Released	2004-07-13
Method	X-RAY DIFFRACTION 1.17 Å
Organisms	Bacillus subtilis
Macromolecule	Guanine deaminase (protein)
Unique Ligands	IMD, ZN

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1ZR6 \| pdb_00001zr6	Download File View File

The crystal structure of an Acremonium strictum glucooligosaccharide oxidase reveals a novel flavinylation

Huang, C.-H., Lai, W.-L., Lee, M.-H., Tsai, Y.-C., Liaw, S.-H.

(2005) J Biological Chem 280: 38831-38838

Released	2005-09-13
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Sarocladium strictum
Macromolecule	glucooligosaccharide oxidase (protein)
Unique Ligands	FAD, NAG, ZN

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2LA1 \| pdb_00002la1	Download File View File

Expression in Pichia pastoris and backbone dynamics of dendroaspin, a three finger toxin

Chuang, W.J., Cheng, C.H., Chen, Y.C., Shiu, J.H.

(2012) Protein Sci 21: 1872-1884

Released	2012-03-07
Method	SOLUTION NMR
Organisms	Dendroaspis jamesoni kaimosae
Macromolecule	Mambin (protein)

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2RD0 \| pdb_00002rd0	Download File View File

Structure of a human p110alpha/p85alpha complex

Huang, C., Gabelli, S.B., Amzel, L.M.

(2007) Science 318: 1744-1748

Released	2007-12-25
Method	X-RAY DIFFRACTION 3.05 Å
Organisms	Homo sapiens
Macromolecule	Phosphatidylinositol 3-kinase regulatory subunit alpha (protein) Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform (protein)

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2XA8 \| pdb_00002xa8	Download File View File

Crystal structure of the Fab domain of omalizumab at 2.41A

Huang, C.H., Hung, F.H.A., Lim, C., Chang, T.W., Ma, C.

(2015) Sci Rep 5: 11581-11581

Released	2011-05-11
Method	X-RAY DIFFRACTION 2.42 Å
Organisms	Homo sapiens
Macromolecule	OMALIZUMAB HEAVY CHAIN (protein) OMALIZUMAB LIGHT CHAIN (protein)

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3AMC \| pdb_00003amc	Download File View File

Crystal structures of Thermotoga maritima Cel5A, apo form and dimer/au

Wu, T.H., Huang, C.H., Ko, T.P., Lai, H.L., Ma, Y., Cheng, Y.S., Liu, J.R., Guo, R.T.

(2011) Biochim Biophys Acta 1814: 1832-1840

Released	2011-08-10
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Thermotoga maritima MSB8
Macromolecule	Endoglucanase (protein)

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3AMD \| pdb_00003amd	Download File View File

Crystal structures of Thermotoga maritima Cel5A, apo form and tetramer/au

Wu, T.H., Huang, C.H., Ko, T.P., Lai, H.L., Ma, Y., Cheng, Y.S., Liu, J.R., Guo, R.T.

(2011) Biochim Biophys Acta 1814: 1832-1840

Released	2011-08-10
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermotoga maritima MSB8
Macromolecule	Endoglucanase (protein)

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3AMG \| pdb_00003amg	Download File View File

Crystal structures of Thermotoga maritima Cel5A in complex with Cellobiose substrate, mutant form

Wu, T.H., Huang, C.H., Ko, T.P., Lai, H.L., Ma, Y., Cheng, Y.S., Liu, J.R., Guo, R.T.

(2011) Biochim Biophys Acta 1814: 1832-1840

Released	2011-08-17
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Thermotoga maritima MSB8
Macromolecule	Endoglucanase (protein)
Unique Ligands	BGC
Unique branched monosaccharides	BGC

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3AMR \| pdb_00003amr	Download File View File

Crystal Structures of Bacillus subtilis Alkaline Phytase in Complex with Ca2+, Co2+, Ni2+, Mg2+ and myo-Inositol Hexasulfate

Zeng, Y.F., Ko, T.P., Lai, H.L., Cheng, Y.S., Wu, T.H., Ma, Y., Yang, C.S., Cheng, K.J., Huang, C.H., Guo, R.T., Liu, J.R.

(2011) J Mol Biology 409: 214-224

Released	2011-04-13
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Bacillus subtilis
Macromolecule	3-phytase (protein)
Unique Ligands	CA, IHS

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3AMS \| pdb_00003ams	Download File View File

Crystal Structures of Bacillus subtilis Alkaline Phytase in Complex with Ca2+, Cd2+, Co2+, Ni2+, Mg2+ and myo-Inositol Hexasulfate

Zeng, Y.F., Ko, T.P., Lai, H.L., Cheng, Y.S., Wu, T.H., Ma, Y., Yang, C.S., Cheng, K.J., Huang, C.H., Guo, R.T., Liu, J.R.

(2011) J Mol Biology 409: 214-224

Released	2011-04-13
Method	X-RAY DIFFRACTION 2.08 Å
Organisms	Bacillus subtilis
Macromolecule	3-phytase (protein)
Unique Ligands	CA, CD, IHS

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3AOF \| pdb_00003aof	Download File View File

Crystal structures of Thermotoga maritima Cel5A in complex with Mannotriose substrate

Wu, T.H., Huang, C.H., Ko, T.P., Lai, H.L., Ma, Y., Cheng, Y.S., Liu, J.R., Guo, R.T.

(2011) Biochim Biophys Acta 1814: 1832-1840

Released	2011-08-10
Method	X-RAY DIFFRACTION 1.288 Å
Organisms	Thermotoga maritima MSB8
Macromolecule	Endoglucanase (protein)
Unique branched monosaccharides	BMA

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3AXD \| pdb_00003axd	Download File View File

The truncated Fibrobacter succinogenes 1,3-1,4-beta-D-glucanase V18Y/W203Y in apo-form

Huang, J.W., Cheng, Y.S., Ko, T.P., Lin, C.Y., Lai, H.L., Chen, C.C., Ma, Y., Huang, C.H., Zheng, Y., Liu, J.R., Guo, R.T.

(2012) Appl Microbiol Biotechnol 94: 111-121

Released	2012-02-15
Method	X-RAY DIFFRACTION 1.53 Å
Organisms	Fibrobacter succinogenes subsp. succinogenes S85
Macromolecule	Beta-glucanase (protein)
Unique Ligands	CA, TRS

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3AXE \| pdb_00003axe	Download File View File

The truncated Fibrobacter succinogenes 1,3-1,4-beta-D-glucanase V18Y/W203Y in complex with cellotetraose (cellobiose density was observed)

Huang, J.W., Cheng, Y.S., Ko, T.P., Lin, C.Y., Lai, H.L., Chen, C.C., Ma, Y., Huang, C.H., Zheng, Y., Liu, J.R., Guo, R.T.

(2012) Appl Microbiol Biotechnol 94: 111-121

Released	2012-02-15
Method	X-RAY DIFFRACTION 1.53 Å
Organisms	Fibrobacter succinogenes subsp. succinogenes S85
Macromolecule	Beta-glucanase (protein)
Unique Ligands	CA, TRS
Unique branched monosaccharides	BGC

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3AZR \| pdb_00003azr	Download File View File

Diverse Substrates Recognition Mechanism Revealed by Thermotoga maritima Cel5A Structures in Complex with Cellobiose

Wu, T.H., Huang, C.H., Ko, T.P., Lai, H.L., Ma, Y., Chen, C.C., Cheng, Y.S., Liu, J.R., Guo, R.T.

(2011) Biochim Biophys Acta 1814: 1832-1840

Released	2011-08-10
Method	X-RAY DIFFRACTION 1.71 Å
Organisms	Thermotoga maritima MSB8
Macromolecule	Endoglucanase (protein)
Unique Ligands	BGC
Unique branched monosaccharides	BGC, GLC

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3AZS \| pdb_00003azs	Download File View File

Diverse Substrates Recognition Mechanism Revealed by Thermotoga maritima Cel5A Structures in Complex with Mannotriose

Wu, T.H., Huang, C.H., Ko, T.P., Lai, H.L., Ma, Y., Chen, C.C., Cheng, Y.S., Liu, J.R., Guo, R.T.

(2011) Biochim Biophys Acta 1814: 1832-1840

Released	2011-08-10
Method	X-RAY DIFFRACTION 1.69 Å
Organisms	Thermotoga maritima MSB8
Macromolecule	Endoglucanase (protein)
Unique branched monosaccharides	BMA, MAN

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3AZT \| pdb_00003azt	Download File View File

Diverse Substrates Recognition Mechanism Revealed by Thermotoga maritima Cel5A Structures in Complex with Cellotetraose

Wu, T.H., Huang, C.H., Ko, T.P., Lai, H.L., Ma, Y., Chen, C.C., Cheng, Y.S., Liu, J.R., Guo, R.T.

(2011) Biochim Biophys Acta 1814: 1832-1840

Released	2011-08-10
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Thermotoga maritima MSB8
Macromolecule	Endoglucanase (protein)
Unique branched monosaccharides	BGC, GLC

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3HHM \| pdb_00003hhm	Download File View File

Crystal structure of p110alpha H1047R mutant in complex with niSH2 of p85alpha and the drug wortmannin

Amzel, L.M., Vogelstein, B., Gabelli, S.B., Mandelker, D.

(2009) Proc Natl Acad Sci U S A 106: 16996-17001

Released	2009-09-29
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform (protein) niSH2 p85alpha (protein)
Unique Ligands	KWT

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3HIZ \| pdb_00003hiz	Download File View File

Crystal structure of p110alpha H1047R mutant in complex with niSH2 of p85alpha

Amzel, L.M., Vogelstein, B., Gabelli, S.B., Mandelker, D.

(2009) Proc Natl Acad Sci U S A 106: 16996-17001

Released	2009-09-29
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Homo sapiens
Macromolecule	Phosphatidylinositol 3-kinase regulatory subunit alpha (protein) Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform (protein)

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3IBA \| pdb_00003iba	Download File View File

Crystal structure of the complex of Trypanosoma cruzi farnesyl diphosphate synthase with zoledronate, IPP and Mg2+

Amzel, L.M., Huang, C.H., Gabelli, S.B., Oldfield, E.

(2010) Proteins 78: 888-899

Released	2010-02-09
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Trypanosoma cruzi
Macromolecule	Farnesyl pyrophosphate synthase (protein)
Unique Ligands	IPE, MG, SO4, ZOL

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3ICK \| pdb_00003ick	Download File View File

Trypanosoma cruzi farnesyl diphosphate synthase homodimer in complex with minodronate and isopentenyl disphosphate

Amzel, L.M., Huang, C.H., Gabelli, S.B., Oldfield, E.

(2010) Proteins 78: 888-899

Released	2010-02-09
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Trypanosoma cruzi
Macromolecule	Farnesyl pyrophosphate synthase (protein)
Unique Ligands	ACY, IPE, M0N, MG, SO4

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3ICM \| pdb_00003icm	Download File View File

Trypanosoma cruzi farnesyl diphosphate synthase homodimer in complex with isopentenyl pyrophosphate, Mg2+ and 1-(2-Hydroxy-2,2-bis-phosphono-ethyl)-3-phenyl-pyridinium

Amzel, L.M., Huang, C.H., Gabelli, S.B., Oldfield, E.

(2010) Proteins 78: 888-899

Released	2010-02-09
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Trypanosoma cruzi
Macromolecule	Farnesyl pyrophosphate synthase (protein)
Unique Ligands	IPE, MG, P2H, SO4

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3ICN \| pdb_00003icn	Download File View File

Trypanosoma cruzi farnesyl diphosphate synthase homodimer in complex with isopentenyl pyrophosphate and 3-Fluoro-1-(2-hydroxy-2,2-bis-phosphono-ethyl)-pyridinium

Amzel, L.M., Huang, C.H., Gabelli, S.B., Oldfield, E.

(2010) Proteins 78: 888-899

Released	2010-02-09
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Trypanosoma cruzi
Macromolecule	Farnesyl pyrophosphate synthase (protein)
Unique Ligands	IPE, MG, NI9, SO4

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3ICZ \| pdb_00003icz	Download File View File

Trypanosoma cruzi farnesyl diphosphate synthase homodimer in complex with 1-(2,2-Bis-phosphono-ethyl)-3-butyl-pyridinium and isopentenyl pyrophosphate

Amzel, L.M., Huang, C.H., Gabelli, S.B., Oldfield, E.

(2010) Proteins 78: 888-899

Released	2010-02-09
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Trypanosoma cruzi
Macromolecule	Farnesyl pyrophosphate synthase (protein)
Unique Ligands	IPE, MG, PB6

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3ID0 \| pdb_00003id0	Download File View File

Trypanosoma cruzi farnesyl diphosphate synthase homodimer in complex with 3-Fluoro-1-(2-hydroxy-2,2-bisphosphono-ethyl)pyridinium

Amzel, L.M., Huang, C.H., Gabelli, S.B., Oldfield, E.

(2010) Proteins 78: 888-899

Released	2010-02-09
Method	X-RAY DIFFRACTION 2.81 Å
Organisms	Trypanosoma cruzi
Macromolecule	Farnesyl pyrophosphate synthase (protein)
Unique Ligands	MG, NI9, SO4