RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Klinke, S."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 36 Structures.

Refinements

Structure Determination Methodology

experimental (36)

Scientific Name of Source Organism

	synthetic construct (20)
	Neisseria meningitidis Z2491 (5)
	Acinetobacter calcoaceticus (4)
	Homo sapiens (4)
	Neisseria meningitidis serogroup A (2)
	Xanthomonas campestris pv. campestris (2)
	Bos taurus (1)
	Podospora anserina S mat+ (1)
	Populus trichocarpa (1)

Taxonomy

	other sequences (20)
	Bacteria (13)
	Eukaryota (7)

Experimental Method

	X-RAY DIFFRACTION (35)
	SOLID-STATE NMR (1)

Polymer Entity Type

	Protein (20)
	DNA (16)

Refinement Resolution (Å)

	1.0 - 1.5 (4)
	1.5 - 2.0 (16)
	2.0 - 2.5 (9)
	2.5 - 3.0 (5)
	3.0 - 3.5 (1)

Release Date

	2005 - 2009 (10)
	2010 - 2014 (7)
	2015 - 2019 (11)
	2020 - 2024 (3)
	2025 - 2029 (5)

Enzyme Classification Name

	Oxidoreductases (14)
	Lyases (1)
	Transferases (2)
	Ligases (1)

Symmetry Type

	Asymmetric (14)
	Cyclic (4)
	Dihedral (2)

SCOP Classification

	All beta proteins (3)
	Alpha and beta proteins (a/b) (1)

AllSelected

1 to 25 of 36 Structures

Page 1 of 2

Sort by

Explore in 3D

2FY6 \| pdb_00002fy6	Download File View File

Structure of the N-terminal domain of Neisseria meningitidis PilB

Ranaivoson, F.M., Kauffmann, B., Neiers, F., Boschi-Muller, S., Branlant, G., Favier, F.

(2006) J Mol Biology 358: 443-454

Released	2006-04-04
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Neisseria meningitidis Z2491
Macromolecule	Peptide methionine sulfoxide reductase msrA/msrB (protein)
Unique Ligands	CL, SO4

Explore in 3D

2J89 \| pdb_00002j89	Download File View File

Functional and structural aspects of poplar cytosolic and plastidial type A methionine sulfoxide reductases

Rouhier, N., Kauffmann, B., Tete-Favier, F., Palladino, P., Gans, P., Branlant, G., Jacquot, J.P., Boschi-Muller, S.

(2007) J Biological Chem 282: 3367

Released	2006-11-23
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Populus trichocarpa
Macromolecule	METHIONINE SULFOXIDE REDUCTASE A (protein)
Unique Ligands	BME

Explore in 3D

3BQE \| pdb_00003bqe	Download File View File

Structure of the central domain (MsrA) of Neisseria meningitidis PilB (reduced form)

Ranaivoson, F.M., Kauffmann, B., Favier, F.

(2008) J Mol Biology 377: 268-280

Released	2008-02-19
Method	X-RAY DIFFRACTION 2 Å
Organisms	Neisseria meningitidis Z2491
Macromolecule	Peptide methionine sulfoxide reductase msrA/msrB (protein)

Explore in 3D

3BQF \| pdb_00003bqf	Download File View File

Structure of the central domain (MsrA) of Neisseria meningitidis PilB (complex with a substrate)

Ranaivoson, F.M., Kauffmann, B., Favier, F.

(2008) J Mol Biology 377: 268-280

Released	2008-02-19
Method	X-RAY DIFFRACTION 2.24 Å
Organisms	Neisseria meningitidis Z2491
Macromolecule	Peptide methionine sulfoxide reductase msrA/msrB (protein)
Unique Ligands	SSM

Explore in 3D

3BQG \| pdb_00003bqg	Download File View File

Structure of the central domain (MsrA) of Neisseria meningitidis PilB (sulfenic acid form)

Ranaivoson, F.M., Kauffmann, B., Favier, F.

(2008) J Mol Biology 377: 268-280

Released	2008-02-19
Method	X-RAY DIFFRACTION 2 Å
Organisms	Neisseria meningitidis Z2491
Macromolecule	Peptide methionine sulfoxide reductase msrA/msrB (protein)

Explore in 3D

3BQH \| pdb_00003bqh	Download File View File

Structure of the central domain (MsrA) of Neisseria meningitidis PilB (oxidized form)

Ranaivoson, F.M., Kauffmann, B., Favier, F.

(2008) J Mol Biology 377: 268-280

Released	2008-02-19
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Neisseria meningitidis Z2491
Macromolecule	Peptide methionine sulfoxide reductase msrA/msrB (protein)
Unique Ligands	ACT

Explore in 3D

3HCG \| pdb_00003hcg	Download File View File

Structure of the C-terminal domain (MsrB) of Neisseria meningitidis PilB (reduced form)

Ranaivoson, F.M., Kauffmann, B., Favier, F.

(2009) J Mol Biology 394: 83-93

Released	2009-10-13
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Neisseria meningitidis serogroup A
Macromolecule	Peptide methionine sulfoxide reductase msrA/msrB (protein)
Unique Ligands	PO4

Explore in 3D

3HCH \| pdb_00003hch	Download File View File

Structure of the C-terminal domain (MsrB) of Neisseria meningitidis PilB (complex with substrate)

Ranaivoson, F.M., Kauffmann, B., Favier, F.

(2009) J Mol Biology 394: 83-93

Released	2009-10-13
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Neisseria meningitidis serogroup A
Macromolecule	Peptide methionine sulfoxide reductase msrA/msrB (protein)
Unique Ligands	CIT, P6G, RSM, TRS

Explore in 3D

3HCI \| pdb_00003hci	Download File View File

Structure of MsrB from Xanthomonas campestris (complex-like form)

Ranaivoson, F.M., Kauffmann, B., Favier, F.

(2009) J Mol Biology 394: 83-93

Released	2009-10-13
Method	X-RAY DIFFRACTION 2.59 Å
Organisms	Xanthomonas campestris pv. campestris
Macromolecule	Peptide methionine sulfoxide reductase (protein)
Unique Ligands	CA, RSM, ZN

Explore in 3D

3HCJ \| pdb_00003hcj	Download File View File

Structure of MsrB from Xanthomonas campestris (oxidized form)

Ranaivoson, F.M., Kauffmann, B., Favier, F.

(2009) J Mol Biology

Released	2009-10-13
Method	X-RAY DIFFRACTION 1.66 Å
Organisms	Xanthomonas campestris pv. campestris
Macromolecule	Peptide methionine sulfoxide reductase (protein)
Unique Ligands	ZN

Explore in 3D

4R44 \| pdb_00004r44	Download File View File

Racemic crystal structure of a tetramolecular DNA G-quadruplex

Mandal, P.K., Collie, G.W., Kauffmann, B., Huc, I.

(2014) Angew Chem Int Ed Engl 53: 14424-14427

Released	2014-11-12
Method	X-RAY DIFFRACTION 2.695 Å
Organisms	synthetic construct
Macromolecule	5'-D(TPGPGPGPGPT)-3' (nucleic acid)
Unique Ligands	K, NA

Explore in 3D

4R45 \| pdb_00004r45	Download File View File

Racemic crystal structure of a bimolecular DNA G-quadruplex (P-1)

Mandal, P.K., Collie, G.W., Kauffmann, B., Huc, I.

(2014) Angew Chem Int Ed Engl 53: 14424-14427

Released	2014-11-12
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	synthetic construct
Macromolecule	5'-D(GPGPGPGPTPTPTPTPGPGPGPG)-3' (nucleic acid)
Unique Ligands	K

Explore in 3D

4R47 \| pdb_00004r47	Download File View File

Racemic crystal structure of a bimolecular DNA G-quadruplex (P21/n)

Mandal, P.K., Collie, G.W., Kauffmann, B., Huc, I.

(2014) Angew Chem Int Ed Engl 53: 14424-14427

Released	2014-11-12
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	synthetic construct
Macromolecule	5'-D(GPGPGPGPTPTPTPTPGPGPGPG)-3' (nucleic acid)
Unique Ligands	K, MG

Explore in 3D

4R48 \| pdb_00004r48	Download File View File

Racemic crystal structure of a calcium-bound DNA four-way junction

Mandal, P.K., Collie, G.W., Kauffmann, B., Huc, I.

(2014) Angew Chem Int Ed Engl 53: 14424-14427

Released	2014-11-12
Method	X-RAY DIFFRACTION 2.33 Å
Organisms	synthetic construct
Macromolecule	5'-D(CPCPGPGPTPAPCPCPGPG)-3' (nucleic acid)
Unique Ligands	CA, NA

Explore in 3D

4R49 \| pdb_00004r49	Download File View File

Racemic crystal structure of a calcium-bound B-DNA duplex

Mandal, P.K., Collie, G.W., Kauffmann, B., Huc, I.

(2014) Angew Chem Int Ed Engl 53: 14424-14427

Released	2014-11-12
Method	X-RAY DIFFRACTION 1.28 Å
Organisms	synthetic construct
Macromolecule	5'-D(CPCPGPGPTPAPCPCPGPG)-3' (nucleic acid)
Unique Ligands	CA, NA

Explore in 3D

4R4A \| pdb_00004r4a	Download File View File

Racemic crystal structure of a cobalt-bound B-DNA duplex

Mandal, P.K., Collie, G.W., Kauffmann, B., Huc, I.

(2014) Angew Chem Int Ed Engl 53: 14424-14427

Released	2014-11-12
Method	X-RAY DIFFRACTION 1.49 Å
Organisms	synthetic construct
Macromolecule	5'-D(CPCPGPGPTPAPCPCPGPG)-3' (nucleic acid)
Unique Ligands	CO, SPM

Explore in 3D

4R4D \| pdb_00004r4d	Download File View File

Racemic crystal structure of a magnesium-bound B-DNA duplex

Mandal, P.K., Collie, G.W., Kauffmann, B., Huc, I.

(2014) Angew Chem Int Ed Engl 53: 14424-14427

Released	2014-11-12
Method	X-RAY DIFFRACTION 1.29 Å
Organisms	synthetic construct
Macromolecule	5'-D(CPCPGPGPTPAPCPCPGPG)-3' (nucleic acid)
Unique Ligands	MG, NA

Explore in 3D

5ET9 \| pdb_00005et9	Download File View File

Racemic crystal structures of Pribnow box consensus promoter sequence (P21/n)

Mandal, P.K., Collie, G.W., Kauffmann, B., Srivastava, S.C., Huc, I.

(2016) Nucleic Acids Res 44: 5936-5943

Released	2016-05-18
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	synthetic construct
Macromolecule	Pribnow box consensus sequence- template strand (nucleic acid) Pribnow box non-template strand (nucleic acid)
Unique Ligands	BA

Explore in 3D

5EWB \| pdb_00005ewb	Download File View File

Racemic crystal structures of Pribnow box consensus promoter sequence (P21/c)

Mandal, P.K., Collie, G.W., Kauffmann, B., Srivastava, S.C., Huc, I.

(2016) Nucleic Acids Res 44: 5936-5943

Released	2016-05-18
Method	X-RAY DIFFRACTION 1.694 Å
Organisms	synthetic construct
Macromolecule	PRIBNOW BOX CONSENSUS SEQUENCE- NON-TEMPLATE STRAND (nucleic acid) PRIBNOW BOX CONSENSUS SEQUENCE- TEMPLATE STRAND (nucleic acid)

Explore in 3D

5EYQ \| pdb_00005eyq	Download File View File

Racemic crystal structures of Pribnow box consensus promoter sequence (Pnna)

Mandal, P.K., Collie, G.W., Kauffmann, B., Srivastava, S.C., Huc, I.

(2016) Nucleic Acids Res 44: 5936-5943

Released	2016-05-18
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	synthetic construct
Macromolecule	Complementary strand (nucleic acid) Pribnow box template strand (nucleic acid)
Unique Ligands	NA

Explore in 3D

5EZF \| pdb_00005ezf	Download File View File

Racemic crystal structures of Pribnow box consensus promoter sequence (Pbca)

Mandal, P.K., Collie, G.W., Kauffmann, B., Srivastava, S.C., Huc, I.

(2016) Nucleic Acids Res 44: 5936-5943

Released	2016-05-18
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	synthetic construct
Macromolecule	Complementary strand (nucleic acid) Pribnow box template strand (nucleic acid)
Unique Ligands	CA

Explore in 3D

5F26 \| pdb_00005f26	Download File View File

Crystal structures of Pribnow box consensus promoter sequence (P63)

Mandal, P.K., Collie, G.W., Kauffmann, B., Srivastava, S.C., Huc, I.

(2016) Nucleic Acids Res 44: 5936-5943

Released	2016-05-18
Method	X-RAY DIFFRACTION 3 Å
Organisms	synthetic construct
Macromolecule	Complementary strand (nucleic acid) Pribnow box consensus sequence strand (nucleic acid)

Explore in 3D

5HIX \| pdb_00005hix	Download File View File

Cocrystal structure of an anti-parallel DNA G-quadruplex and a tetra-Quinoline Foldamer

Mandal, P.K., Baptiste, B., Langlois d'Estaintot, B., Kauffmann, B., Huc, I.

(2016) Chembiochem 17: 1911-1914

Released	2016-11-02
Method	X-RAY DIFFRACTION 2.48 Å
Organisms	synthetic construct
Macromolecule	Dimeric G-quadruplex (nucleic acid)
Unique Ligands	61Q, K

Explore in 3D

5J0E \| pdb_00005j0e	Download File View File

Crystal structures of Pribnow box consensus promoter sequence (P32)

Mandal, P.K., Collie, G.W., Kauffmann, B., Huc, I.

(2016) Nucleic Acids Res 44: 5936-5943

Released	2016-05-18
Method	X-RAY DIFFRACTION 2.81 Å
Organisms	synthetic construct
Macromolecule	Complementary sequence (nucleic acid) Pribnow box consensus promoter sequence (nucleic acid)
Unique Ligands	ZN

Explore in 3D

5MIN \| pdb_00005min	Download File View File

Apo form of the soluble PQQ-dependent Glucose Dehydrogenase from Acinetobacter calcoaceticus

Stines-Chaumeil, C., Mavre, F., Limoges, B., Kauffmann, B., Mano, N.

To be published

Released	2017-12-20
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Acinetobacter calcoaceticus
Macromolecule	Quinoprotein glucose dehydrogenase B (protein)
Unique Ligands	CA, CL

1 to 25 of 36 Structures

Page 1 of 2

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2FY6 | pdb_00002fy6

2J89 | pdb_00002j89

3BQE | pdb_00003bqe

3BQF | pdb_00003bqf

3BQG | pdb_00003bqg

3BQH | pdb_00003bqh

3HCG | pdb_00003hcg

3HCH | pdb_00003hch

3HCI | pdb_00003hci

3HCJ | pdb_00003hcj

4R44 | pdb_00004r44

4R45 | pdb_00004r45

4R47 | pdb_00004r47

4R48 | pdb_00004r48

4R49 | pdb_00004r49

4R4A | pdb_00004r4a

4R4D | pdb_00004r4d

5ET9 | pdb_00005et9

5EWB | pdb_00005ewb

5EYQ | pdb_00005eyq

5EZF | pdb_00005ezf

5F26 | pdb_00005f26

5HIX | pdb_00005hix

5J0E | pdb_00005j0e

5MIN | pdb_00005min