RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Khant, H.A."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 94 Structures.

Refinements

Structure Determination Methodology

experimental (94)

Scientific Name of Source Organism

	Homo sapiens (83)
	Severe acute respiratory syndrome coronavirus 2 (22)
	Human immunodeficiency virus 1 (10)
	Influenza A virus (10)
	Influenza A virus (A/mallard/Alberta/35/1976(H1N1)) (4)
	unidentified human coronavirus (4)
	Clostridium tetani (2)
	Middle East respiratory syndrome-related coronavirus (2)
	Plasmodium falciparum 3D7 (2)
	Plasmodium falciparum NF54 (2)

More...

Taxonomy

	Eukaryota (84)
	Riboviria (71)
	Bacteria (2)
	Duplodnaviria (2)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (50)
	ELECTRON MICROSCOPY (43)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (94)

Refinement Resolution (Å)

	1.5 - 2.0 (11)
	2.0 - 2.5 (15)
	2.5 - 3.0 (16)
	3.0 - 3.5 (29)
	3.5 - 4.0 (13)
	4.0 - 4.5 (5)
	> 4.5 (4)

Release Date

	2010 - 2014 (3)
	2015 - 2019 (37)
	2020 - 2024 (54)

Enzyme Classification Name

Hydrolases (16)

Membrane Protein Annotation

	mpstruc (3)
	OPM (2)
	MemProtMD (1)

Symmetry Type

	Asymmetric (71)
	Cyclic (23)
	Icosahedral (1)

SCOP Classification

	All beta proteins (25)
	Artifacts (5)
	Coiled coil proteins (2)
	Alpha and beta proteins (a+b) (1)

AllSelected

1 to 25 of 94 Structures

Page 1 of 4

Sort by

Explore in 3D

2XRA \| pdb_00002xra	Download File View File

crystal structure of the HK20 Fab in complex with a gp41 mimetic 5- Helix

Sabin, C., Corti, D., Buzon, V., Seaman, M.S., Lutje Hulsik, D., Hinz, A., Vanzetta, F., Agatic, G., Silacci, C., Langedijk, J.P.M., Mainetti, L., Scarlatti, G., Sallusto, F., Weiss, R., Lanzavecchia, A., Weissenhorn, W.

(2010) PLoS Pathog 6: e1001195-e1001195

Released	2010-12-15
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	HK20, HUMAN MONOCLONAL ANTIBODY HEAVY CHAIN (protein) HK20, HUMAN MONOCLONAL ANTIBODY LIGHT CHAIN (protein) TRANSMEMBRANE PROTEIN GP41 (protein)

Explore in 3D

3ZTJ \| pdb_00003ztj	Download File View File

Structure of influenza A neutralizing antibody selected from cultures of single human plasma cells in complex with human H3 Influenza haemagglutinin.

Voss, J.E., Vachieri, S.G., Gamblin, S.J., Collins, P.J., Haire, L.F., Skehel, J.J.

(2011) Science 333: 850

Released	2011-08-10
Method	X-RAY DIFFRACTION 3.41 Å
Organisms	Homo sapiens Influenza A virus (A/Aichi/2/1968(H3N2))
Macromolecule	FI6V3 ANTIBODY HEAVY CHAIN (protein) FI6V3 ANTIBODY LIGHT CHAIN (protein) HEMAGGLUTININ HA1 CHAIN (protein) HEMAGGLUTININ HA2 CHAIN (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

Explore in 3D

3ZTN \| pdb_00003ztn	Download File View File

STRUCTURE OF INFLUENZA A NEUTRALIZING ANTIBODY SELECTED FROM CULTURES OF SINGLE HUMAN PLASMA CELLS IN COMPLEX WITH HUMAN H1 INFLUENZA HAEMAGGLUTININ.

Hubbard, P.A., Ritchie, A.J., Corti, D., Voss, J.E., Gamblin, S.J., Codoni, G., Macagno, A., Jarrossay, D., Pinna, D., Minola, A., Vanzetta, F., Silacci, C., Fernandez-Rodriguez, B.M., Agatic, G., Giacchetto-Sasselli, I., Vachieri, S.G., Sallusto, F., Collins, P.J., Haire, L.F., Temperton, N., Langedijk, J.P.M., Skehel, J.J., Lanzavecchia, A.

(2011) Science 333: 850

Released	2011-08-10
Method	X-RAY DIFFRACTION 3.001 Å
Organisms	Homo sapiens Influenza A virus (A/California/04/2009(H1N1))
Macromolecule	FI6V3 ANTIBODY LIGHT CHAIN (protein) HAEMAGGLUTININ (protein)
Unique Ligands	GOL, NAG, SO4
Unique branched monosaccharides	BMA, NAG

Explore in 3D

4RWY \| pdb_00004rwy	Download File View File

Crystal structure of VH1-46 germline-derived CD4-binding site-directed antibody 8ANC131 in complex with HIV-1 clade B YU2 gp120

Acharya, P., Luongo, T.S., Kwong, P.D.

(2015) Cell 161: 1280-1292

Released	2015-07-01
Method	X-RAY DIFFRACTION 2.128 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Antibody 8ANC131 Heavy chain (protein) Antibody 8ANC131 Light chain (protein) HIV-1 YU2 gp120 (protein)
Unique Ligands	EDO, EPE, NA, NAG

Explore in 3D

4RX4 \| pdb_00004rx4	Download File View File

Crystal structure of VH1-46 germline-derived CD4-binding site-directed antibody 8ANC134 in complex with HIV-1 clade A Q842.d12 gp120

Zhou, T., Acharya, P., Moquin, S., Kwong, P.D.

(2015) Cell 161: 1280-1292

Released	2015-07-01
Method	X-RAY DIFFRACTION 3.45 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	8ANC134 Heavy chain (protein) 8ANC134 Light Chain (protein) HIV-1 Clade A Q842.d12 gp120 (protein)
Unique Ligands	EDO, NAG, SO4

Explore in 3D

4YDI \| pdb_00004ydi	Download File View File

Crystal structure of broad and potently neutralizing VRC01-class antibody Z258-VRC27.01, isolated from human donor Z258, in complex with HIV-1 gp120 from clade A strain Q23.17

Zhou, T., Srivatsan, S., Kwong, P.D.

(2015) Cell 161: 1280-1292

Released	2015-06-03
Method	X-RAY DIFFRACTION 3.452 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Envelope glycoprotein gp160 (protein) HEAVY CHAIN OF ANTIBODY Z258-VRC27.01 (protein) LIGHT CHAIN OF ANTIBODY Z258-VRC27.01 (protein)
Unique Ligands	EDO, NAG, SO4

Explore in 3D

4YDJ \| pdb_00004ydj	Download File View File

Crystal structure of broadly and potently neutralizing antibody 44-VRC13.01 in complex with HIV-1 clade AE strain 93TH057 gp120

Zhou, T., Moquin, S., Kwong, P.D.

(2015) Cell 161: 1280-1292

Released	2015-06-03
Method	X-RAY DIFFRACTION 2.308 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Envelope glycoprotein gp160,Envelope glycoprotein gp160 (protein) HEAVY CHAIN OF ANTIBODY 44-VRC13.01 (protein) LIGHT CHAIN OF ANTIBODY 44-VRC13.01 (protein)
Unique Ligands	BU3, CL, IPA, NA, NAG, PEG

Explore in 3D

4YDK \| pdb_00004ydk	Download File View File

Crystal structure of broadly and potently neutralizing antibody C38-VRC16.01 in complex with HIV-1 clade AE strain 93TH057 gp120

Zhou, T., Moquin, S., Zheng, A., Kwong, P.D.

(2015) Cell 161: 1280-1292

Released	2015-06-03
Method	X-RAY DIFFRACTION 2.051 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Envelope glycoprotein gp160,Envelope glycoprotein gp160 (protein) HEAVY CHAIN OF ANTIBODY C38-VRC16.01 (protein) LIGHT CHAIN OF ANTIBODY C38-VRC16.01 (protein)
Unique Ligands	GOL, NAG, NHE, PEG

Explore in 3D

4YDL \| pdb_00004ydl	Download File View File

Crystal structure of broadly and potently neutralizing antibody C38-VRC18.02 in complex with HIV-1 clade AE strain 93TH057gp120

Zhou, T., Srivatsan, S., Kwong, P.D.

(2015) Cell 161: 1280-1292

Released	2015-06-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Envelope glycoprotein gp160,Envelope glycoprotein gp160 (protein) HEAVY CHAIN OF ANTIBODY C38-VRC18.02 (protein) LIGHT CHAIN OF ANTIBODY C38-VRC18.02 (protein)
Unique Ligands	EPE, NAG, SO4

Explore in 3D

4YE4 \| pdb_00004ye4	Download File View File

Crystal Structure of Neutralizing Antibody HJ16 in Complex with HIV-1 gp120

Kwong, P.D., Chen, L., Zhou, T.

(2015) Cell 161: 1280-1292

Released	2015-07-22
Method	X-RAY DIFFRACTION 2.72 Å
Organisms	Homo sapiens Human immunodeficiency virus
Macromolecule	HT593.1 gp120 (protein) Heavy chain human antibody HJ16 (protein) Light chain of HJ16 (protein)
Unique Ligands	NAG

Explore in 3D

4YFL \| pdb_00004yfl	Download File View File

Crystal structure of VH1-46 germline-derived CD4-binding site-directed antibody 1B2530 in complex with HIV-1 clade A/E 93TH057 gp120

Acharya, P., Zhou, T., Moquin, S., Kwong, P.D.

(2015) Cell 161: 1280-1292

Released	2015-06-03
Method	X-RAY DIFFRACTION 3.387 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	1B2530 Light chain (protein) 1B2530 heavy chain (protein) Envelope glycoprotein gp160,Envelope glycoprotein gp160,Envelope glycoprotein gp160 (protein)
Unique Ligands	NAG

Explore in 3D

5A3I \| pdb_00005a3i	Download File View File

Crystal Structure of a Complex formed between FLD194 Fab and Transmissible Mutant H5 Haemagglutinin

Xiong, X., Corti, D., Liu, J., Pinna, D., Foglierini, M., Calder, L.J., Martin, S.R., Lin, Y.P., Walker, P.A., Collins, P.J., Monne, I., Suguitan Jr, A.L., Santos, C., Temperton, N.J., Subbarao, K., Lanzavecchia, A., Gamblin, S.J., Skehel, J.J.

(2015) Proc Natl Acad Sci U S A 112: 9430

Released	2015-07-22
Method	X-RAY DIFFRACTION 2.89 Å
Organisms	Homo sapiens Influenza A virus (A/Viet Nam/1203/2004(H5N1))
Macromolecule	ANTI-HAEMAGGLUTININ HA1 FAB HEAVY CHAIN (protein) ANTI-HAEMAGGLUTININ HA1 FAB LIGHT CHAIN (protein) HEMAGGLUTININ (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

Explore in 3D

5FHA \| pdb_00005fha	Download File View File

Crystal Structure of Protective Ebola Virus Antibody 114

Gilman, M.S.A., McLellan, J.S.

(2016) Science 351: 1343-1346

Released	2016-03-16
Method	X-RAY DIFFRACTION 1.973 Å
Organisms	Homo sapiens
Macromolecule	Antibody 114 Fab heavy chain (protein) Antibody 114 Fab light chain (protein)

Explore in 3D

5FHB \| pdb_00005fhb	Download File View File

Crystal Structure of Protective Ebola Virus Antibody 100

Gilman, M.S.A., McLellan, J.S.

(2016) Science 351: 1343-1346

Released	2016-03-16
Method	X-RAY DIFFRACTION 1.973 Å
Organisms	Homo sapiens
Macromolecule	Antibody 100 Fab heavy chain (protein) Antibody 100 Fab light chain (protein)
Unique Ligands	ACT, EDO

Explore in 3D

5FHC \| pdb_00005fhc	Download File View File

Crystal Structure of Protective Human Antibodies 100 and 114 in Complex with Ebola Virus Fusion Glycoprotein (GP)

Gilman, M.S.A., McLellan, J.S.

(2016) Science 351: 1343-1346

Released	2016-03-16
Method	X-RAY DIFFRACTION 6.704 Å
Organisms	Ebola virus - Mayinga, Zaire, 1976 Homo sapiens
Macromolecule	Unique protein chains: 6

Explore in 3D

5JW3 \| pdb_00005jw3	Download File View File

Structure of MEDI8852 Fab Fragment in Complex with H7 HA

Collins, P.J., Neu, U., Walker, P.A., Vorlaender, M.K., Ogrodowicz, R.W., Martin, S.R., Gamblin, S.J., Skehel, J.J.

(2016) Cell 166: 596-608

Released	2016-08-03
Method	X-RAY DIFFRACTION 3.75 Å
Organisms	Homo sapiens Influenza A virus (A/turkey/Italy/214845/2002(H7N3))
Macromolecule	Hemagglutinin (protein) MEDI8852 heavy chain (protein) MEDI8852 light chain (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

Explore in 3D

5JW4 \| pdb_00005jw4	Download File View File

Structure of MEDI8852 Fab Fragment in Complex with H5 HA

Neu, U., Collins, P.J., Walker, P.A., Vorlaender, M.K., Ogrodowicz, R.W., Martin, S.R., Gamblin, S.J., Skehel, J.J.

(2016) Cell 166: 596-608

Released	2016-08-03
Method	X-RAY DIFFRACTION 3.7 Å
Organisms	Homo sapiens Influenza A virus (A/Vietnam/1194/2004(H5N1))
Macromolecule	Unique protein chains: 6
Unique Ligands	NAG
Unique branched monosaccharides	NAG

Explore in 3D

5JW5 \| pdb_00005jw5	Download File View File

Structure of MEDI8852 Fab Fragment

Neu, U., Collins, P.J., Walker, P.A., Vorlaender, M.K., Ogrodowicz, R.W., Martin, S.R., Gamblin, S.J., Skehel, J.J.

(2016) Cell 166: 596-608

Released	2016-08-03
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	MEDI8852 Heavy chain (protein) MEDI8852 Light chain (protein)
Unique Ligands	PO4

Explore in 3D

5OMZ \| pdb_00005omz	Download File View File

Solution structure of domain III (DIII)of Zika virus Envelope protein

Zerbe, O., Bardelli, M.

(2017) Cell 171: 229-241.e15

Released	2017-10-04
Method	SOLUTION NMR
Organisms	Zika virus
Macromolecule	Envelope Protein (protein)

Explore in 3D

5TDG \| pdb_00005tdg	Download File View File

Crystal structure of prefusion-stabilized bovine RSV F (DS-Cav1 variant: strain ATue51908)

Chen, L., Zhang, B., Kwong, P.D.

(2017) NPJ Vaccines 2: 7-7

Released	2017-08-16
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Bovine orthopneumovirus Tequatrovirus T2
Macromolecule	Fusion glycoprotein F0,Fibritin (protein)
Unique Ligands	NAG

Explore in 3D

5TDL \| pdb_00005tdl	Download File View File

Crystal structure of prefusion-stabilized bovine RSV fusion glycoprotein (single-chain DS2-v1 variant: strain 391-2 sc9 DS-Cav1 Q98C Q361C)

Chen, L., Zhang, B., Kwong, P.D.

(2017) NPJ Vaccines 2: 7-7

Released	2017-08-16
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Bovine respiratory syncytial virus (strain Copenhagen) Tequatrovirus T4
Macromolecule	Bovine prefusion RSV F glycoprotein (protein)
Unique Ligands	NAG

Explore in 3D

5Y0A \| pdb_00005y0a	Download File View File

Cryo-EM structure of zika virus complexed with Fab of ZKA190 at pH 8.0 and 37 celsius degree

Wang, J.Q., Lok, S.M.

(2017) Cell 171: 229-241.e15

Released	2017-10-04
Method	ELECTRON MICROSCOPY 22 Å
Organisms	Homo sapiens Zika virus
Macromolecule	protein E (protein) variable region of Fab ZKA190 heavy chain (protein) variable region of Fab ZKA190 light chain (protein)

Explore in 3D

6BQB \| pdb_00006bqb	Download File View File

MGG4 Fab in complex with peptide

Oyen, D., Tan, J., Lanzavecchia, A., Wilson, I.A.

(2018) Nat Med 24: 401-407

Released	2018-03-07
Method	X-RAY DIFFRACTION 1.769 Å
Organisms	Homo sapiens Plasmodium falciparum
Macromolecule	MGG4 Fab heavy chain (protein) MGG4 Fab light chain (protein) N-terminal junction peptide (protein)
Unique Ligands	GOL

Explore in 3D

6FG1 \| pdb_00006fg1	Download File View File

CRYSTAL STRUCTURE OF FAB OF NATALIZUMAB IN COMPLEX WITH FAB OF NAA32.

Bertrand, T., Pouzieux, S.

(2019) Nat Med 25: 1402-1407

Released	2019-07-24
Method	X-RAY DIFFRACTION 2.03 Å
Organisms	Homo sapiens
Macromolecule	HEAVY CHAIN OF FAB NAA32 (protein) HEAVY CHAIN OF FAB NATALIZUMAB (protein) LIGHT CHAIN OF FAB NAA32 (protein) LIGHT CHAIN OF FAB NATALIZUMAB (protein)
Unique Ligands	GOL

Explore in 3D

6FG2 \| pdb_00006fg2	Download File View File

CRYSTAL STRUCTURE OF FAB OF NATALIZUMAB IN COMPLEX WITH FAB OF NAA84.

Bertrand, T., Pouzieux, S.

(2019) Nat Med 25: 1402-1407

Released	2019-07-24
Method	X-RAY DIFFRACTION 2.788 Å
Organisms	Homo sapiens
Macromolecule	HEAVY CHAIN FAB NAA84 (protein) HEAVY CHAIN FAB NATALIZUMAB (protein) LIGHT CHAIN FAB NAA84 (protein) LIGHT CHAIN FAB NATALIZUMAB (protein)
Unique branched monosaccharides	NAG

1 to 25 of 94 Structures

Page 1 of 4

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

2XRA | pdb_00002xra

3ZTJ | pdb_00003ztj

3ZTN | pdb_00003ztn

4RWY | pdb_00004rwy

4RX4 | pdb_00004rx4

4YDI | pdb_00004ydi

4YDJ | pdb_00004ydj

4YDK | pdb_00004ydk

4YDL | pdb_00004ydl

4YE4 | pdb_00004ye4

4YFL | pdb_00004yfl

5A3I | pdb_00005a3i

5FHA | pdb_00005fha

5FHB | pdb_00005fhb

5FHC | pdb_00005fhc

5JW3 | pdb_00005jw3

5JW4 | pdb_00005jw4

5JW5 | pdb_00005jw5

5OMZ | pdb_00005omz

5TDG | pdb_00005tdg

5TDL | pdb_00005tdl

5Y0A | pdb_00005y0a

6BQB | pdb_00006bqb

6FG1 | pdb_00006fg1

6FG2 | pdb_00006fg2