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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Johnson, K.M."

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Search Summary

This query matches 14 Structures.

Refinements

Structure Determination Methodology

experimental (14)

Scientific Name of Source Organism

	Homo sapiens (14)
	synthetic construct (3)
	DNA molecule (1)

Taxonomy

	Eukaryota (14)
	other sequences (3)
	Eukaryota (eukaryotes) (1)
	unclassified sequences (1)

Experimental Method

X-RAY DIFFRACTION (14)

Polymer Entity Type

	Protein (14)
	DNA (4)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.0 - 2.5 (3)
	2.5 - 3.0 (4)
	3.0 - 3.5 (4)
	3.5 - 4.0 (1)

Release Date

	2005 - 2009 (3)
	2015 - 2019 (3)
	2020 - 2024 (8)

Enzyme Classification Name

	Transferases (11)
	Hydrolases (1)

Symmetry Type

	Asymmetric (13)
	Cyclic (1)

SCOP Classification

	All alpha proteins (3)
	Alpha and beta proteins (a+b) (3)

AllSelected

1 to 14 of 14 Structures

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2VHF \| pdb_00002vhf	Download File View File

Structure of the CYLD USP domain

Komander, D., Lord, C.J., Scheel, H., Swift, S., Hofmann, K., Ashworth, A., Barford, D.

(2008) Mol Cell Biol 29: 451

Released	2008-03-11
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE CYLD (protein)
Unique Ligands	ZN

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2W18 \| pdb_00002w18	Download File View File

Crystal structure of the C-terminal WD40 domain of human PALB2

Oliver, A.W., Pearl, L.H.

(2009) EMBO Rep 10: 990

Released	2009-07-28
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	PARTNER AND LOCALIZER OF BRCA2 (protein)
Unique Ligands	GOL

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3EU7 \| pdb_00003eu7	Download File View File

Crystal Structure of a PALB2 / BRCA2 complex

Oliver, A.W., Pearl, L.H.

(2009) EMBO Rep 10: 990-996

Released	2009-07-28
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	19meric peptide from Breast cancer type 2 susceptibility protein (protein) Partner and localizer of BRCA2 (protein)
Unique Ligands	GOL

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4U6A \| pdb_00004u6a	Download File View File

X-ray crystal structure of human TNKS in complex with a small molecule inhibitor

Oliver, A.W.

To be published

Released	2015-07-08
Method	X-RAY DIFFRACTION 2.37 Å
Organisms	Homo sapiens
Macromolecule	Tankyrase-1 (protein)
Unique Ligands	3DN, EDO, GOL, ZN

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4UUH \| pdb_00004uuh	Download File View File

X-ray crystal structure of human TNKS in complex with a small molecule inhibitor

Oliver, A.W., Rajasekaran, M.B., Pearl, L.H.

(2015) Med Chem Res 6: 1687

Released	2015-07-08
Method	X-RAY DIFFRACTION 2.52 Å
Organisms	Homo sapiens
Macromolecule	TANKYRASE-1 (protein)
Unique Ligands	EDO, GOL, T40, ZN

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4UW1 \| pdb_00004uw1	Download File View File

X-ray crystal structure of human TNKS in complex with a small molecule inhibitor

Oliver, A.W., Rajasekaran, M.B., Pearl, L.H.

(2015) Med Chem Res 6: 1687

Released	2015-07-08
Method	X-RAY DIFFRACTION 3.37 Å
Organisms	Homo sapiens
Macromolecule	TANKYRASE-1 (protein)
Unique Ligands	92R, EDO, GOL, ZN

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6NTU \| pdb_00006ntu	Download File View File

Crystal Structure of human PARP-1 ART domain bound to inhibitor UKTT-15

Langelier, M.F., Pascal, J.M.

(2020) Science 368:

Released	2020-02-05
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Poly [ADP-ribose] polymerase 1 (protein)
Unique Ligands	1PE, DMS, L1S, SO4
Unique branched monosaccharides	FRU, GLC

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6VKK \| pdb_00006vkk	Download File View File

Crystal Structure of human PARP-1 CAT domain bound to inhibitor rucaparib

Steffen, J.D., Pascal, J.M.

(2020) Science 368:

Released	2020-06-17
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Poly [ADP-ribose] polymerase 1 (protein)
Unique Ligands	GOL, RPB, SO4

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6VKO \| pdb_00006vko	Download File View File

Crystal Structure of human PARP-1 CAT domain bound to inhibitor UKTT15

Langelier, M.F., Pascal, J.M.

(2020) Science 368:

Released	2020-06-17
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Poly [ADP-ribose] polymerase 1 (protein)
Unique Ligands	L1S, SO4

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6VKQ \| pdb_00006vkq	Download File View File

Crystal Structure of human PARP-1 CAT domain bound to inhibitor EB-47

Steffen, J.D., Pascal, J.M.

(2020) Science 368:

Released	2020-06-17
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	Poly [ADP-ribose] polymerase 1 (protein)
Unique Ligands	SO4, UHB

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7S68 \| pdb_00007s68	Download File View File

Structure of human PARP1 domains (Zn1, Zn3, WGR and HD) bound to a DNA double strand break.

Rouleau-Turcotte, E., Pascal, J.M.

(2022) Mol Cell 82: 2939-2951.e5

Released	2022-06-29
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	DNA molecule Homo sapiens
Macromolecule	Fusion of PARP1 zinc fingers 1 and 3 (Zn1, Zn3) (protein) Poly [ADP-ribose] polymerase 1 (protein) DNA (5'-D(GPCPCPTPGPCPAPGPGPC)-3') (nucleic acid)
Unique Ligands	ZN

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7S6H \| pdb_00007s6h	Download File View File

Human PARP1 deltaV687-E688 bound to NAD+ analog EB-47 and to a DNA double strand break.

Rouleau-Turcotte, E., Pascal, J.M.

(2022) Mol Cell 82: 2939-2951.e5

Released	2022-06-29
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Fusion of human PARP1 zinc fingers 1 and 3 (Zn1, Zn3) (protein) Poly [ADP-ribose] polymerase 1 (protein) DNA (5'-D(CPGPAPCPG)-3') (nucleic acid) DNA (5'-D(CPGPTPCPG)-3') (nucleic acid)
Unique Ligands	EDO, UHB, ZN

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7S6M \| pdb_00007s6m	Download File View File

Human PARP1 deltaV687-E688 bound to a DNA double strand break.

Rouleau-Turcotte, E., Pascal, J.M.

(2022) Mol Cell 82: 2939-2951.e5

Released	2022-06-29
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Fusion of human PARP1 zinc fingers 1 and 3 (Zn1, Zn3) (protein) Poly [ADP-ribose] polymerase 1 (protein) DNA (5'-D(CPGPAPCPG)-3') (nucleic acid) DNA (5'-D(CPGPTPCPG)-3') (nucleic acid)
Unique Ligands	EDO, ZN

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7S81 \| pdb_00007s81	Download File View File

Structure of human PARP1 domains (Zn1, Zn3, WGR, HD) bound to a DNA double strand break.

Rouleau-Turcotte, E., Pascal, J.M.

(2022) Mol Cell 82: 2939-2951.e5

Released	2022-06-29
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Poly [ADP-ribose] polymerase 1 (protein) DNA (5'-D(APTPGPCPGPGPCPCPGPCPAPT)-3') (nucleic acid)
Unique Ligands	ZN

1 to 14 of 14 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

2VHF | pdb_00002vhf

Structure of the CYLD USP domain

2W18 | pdb_00002w18

Crystal structure of the C-terminal WD40 domain of human PALB2

3EU7 | pdb_00003eu7

Crystal Structure of a PALB2 / BRCA2 complex

4U6A | pdb_00004u6a

X-ray crystal structure of human TNKS in complex with a small molecule inhibitor

4UUH | pdb_00004uuh

X-ray crystal structure of human TNKS in complex with a small molecule inhibitor

4UW1 | pdb_00004uw1

X-ray crystal structure of human TNKS in complex with a small molecule inhibitor

6NTU | pdb_00006ntu

Crystal Structure of human PARP-1 ART domain bound to inhibitor UKTT-15

6VKK | pdb_00006vkk

Crystal Structure of human PARP-1 CAT domain bound to inhibitor rucaparib

6VKO | pdb_00006vko

Crystal Structure of human PARP-1 CAT domain bound to inhibitor UKTT15

6VKQ | pdb_00006vkq

Crystal Structure of human PARP-1 CAT domain bound to inhibitor EB-47

7S68 | pdb_00007s68

Structure of human PARP1 domains (Zn1, Zn3, WGR and HD) bound to a DNA double strand break.

7S6H | pdb_00007s6h

Human PARP1 deltaV687-E688 bound to NAD+ analog EB-47 and to a DNA double strand break.

7S6M | pdb_00007s6m

Human PARP1 deltaV687-E688 bound to a DNA double strand break.

7S81 | pdb_00007s81

Structure of human PARP1 domains (Zn1, Zn3, WGR, HD) bound to a DNA double strand break.

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2VHF | pdb_00002vhf

2W18 | pdb_00002w18

3EU7 | pdb_00003eu7

4U6A | pdb_00004u6a

4UUH | pdb_00004uuh

4UW1 | pdb_00004uw1

6NTU | pdb_00006ntu

6VKK | pdb_00006vkk

6VKO | pdb_00006vko

6VKQ | pdb_00006vkq

7S68 | pdb_00007s68

7S6H | pdb_00007s6h

7S6M | pdb_00007s6m

7S81 | pdb_00007s81