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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Haubrich, K."

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Search Summary

This query matches 17 Structures.

Refinements

Structure Determination Methodology

experimental (17)

Scientific Name of Source Organism

	Homo sapiens (17)
	Influenza A virus (A/Puerto Rico/8/1934(H1N1)) (2)

Taxonomy

	Eukaryota (17)
	Riboviria (2)

Experimental Method

X-RAY DIFFRACTION (17)

Polymer Entity Type

Protein (17)

Refinement Resolution (Å)

	1.5 - 2.0 (4)
	2.0 - 2.5 (5)
	2.5 - 3.0 (5)
	3.0 - 3.5 (1)
	3.5 - 4.0 (1)
	4.0 - 4.5 (1)

Release Date

	2015 - 2019 (5)
	2020 - 2024 (12)

Enzyme Classification Name

	Ligases (4)
	Transferases (4)

Symmetry Type

	Asymmetric (13)
	Cyclic (4)

SCOP Classification

	All beta proteins (1)
	Alpha and beta proteins (a+b) (1)

AllSelected

1 to 17 of 17 Structures

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5NQH \| pdb_00005nqh	Download File View File

Structure of the human Fe65-PTB2 homodimer

Feilen, L.P., Haubrich, K., Sinning, I., Konietzko, U., Kins, S., Simon, B., Wild, K.

(2017) Front Mol Neurosci 10: 140-140

Released	2017-05-03
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Amyloid beta A4 precursor protein-binding family B member 1 (protein)
Unique Ligands	GOL, SO4

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5NT1 \| pdb_00005nt1	Download File View File

Complex of influenza A NS1 effector domain with TRIM25 coiled coil

Koliopoulos, M.G., Rittinger, K.

(2018) Nat Commun 9: 1820-1820

Released	2018-05-16
Method	X-RAY DIFFRACTION 2.82 Å
Organisms	Homo sapiens Influenza A virus (A/Puerto Rico/8/1934(H1N1))
Macromolecule	E3 ubiquitin/ISG15 ligase TRIM25 (protein) Non-structural protein 1 (protein)

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5NT2 \| pdb_00005nt2	Download File View File

Complex of influenza A NS1 with TRIM25 coiled coil domain

Koliopoulos, M.G., Rittinger, K.

(2018) Nat Commun 9: 1820-1820

Released	2018-05-23
Method	X-RAY DIFFRACTION 4.259 Å
Organisms	Homo sapiens Influenza A virus (A/Puerto Rico/8/1934(H1N1))
Macromolecule	E3 ubiquitin/ISG15 ligase TRIM25 (protein) Non-structural protein 1 (protein)

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6FLM \| pdb_00006flm	Download File View File

Crystal structure of the human TRIM25 PRYSPRY domain

Cusack, S., Kowalinski, E.

(2018) Nat Commun 9: 1820-1820

Released	2018-05-23
Method	X-RAY DIFFRACTION 2.009 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin/ISG15 ligase TRIM25 (protein)
Unique Ligands	CL, SO4

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6FLN \| pdb_00006fln	Download File View File

Crystal structure of the human TRIM25 coiled-coil and PRYSPRY domains

Cusack, S., Lethier, M.

(2018) Nat Commun 9: 1820-1820

Released	2018-05-23
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin/ISG15 ligase TRIM25 (protein)

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7ZLM \| pdb_00007zlm	Download File View File

Crystal structure of SOCS2:ElonginB:ElonginC in complex with compound MN551

Ramachandran, S., Ciulli, A., Makukhin, N.

(2023) Nat Commun 14: 6345-6345

Released	2023-04-26
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Homo sapiens
Macromolecule	Elongin-B (protein) Elongin-C (protein) Suppressor of cytokine signaling 2 (protein)
Unique Ligands	JIH

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7ZLN \| pdb_00007zln	Download File View File

Crystal structure of SOCS2:ElonginB:ElonginC in complex with compound 11

Ramachandran, S., Ciulli, A., Makukhin, N.

(2023) Nat Commun 14: 6345-6345

Released	2023-04-26
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Elongin-B (protein) Elongin-C (protein) Suppressor of cytokine signaling 2 (protein)
Unique Ligands	JI9

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7ZLO \| pdb_00007zlo	Download File View File

Crystal structure of SOCS2:ElonginB:ElonginC in complex with compound 12

Ramachandran, S., Ciulli, A., Makukhin, N.

(2023) Nat Commun 14: 6345-6345

Released	2023-04-26
Method	X-RAY DIFFRACTION 2.22 Å
Organisms	Homo sapiens
Macromolecule	Elongin-B (protein) Elongin-C (protein) Suppressor of cytokine signaling 2 (protein)
Unique Ligands	JI0

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7ZLP \| pdb_00007zlp	Download File View File

Crystal structure of SOCS2:ElonginB:ElonginC in complex with compound 9

Ramachandran, S., Ciulli, A., Makukhin, N.

(2023) Nat Commun 14: 6345-6345

Released	2023-04-26
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Homo sapiens
Macromolecule	Elongin-B (protein) Elongin-C (protein) Suppressor of cytokine signaling 2 (protein)
Unique Ligands	JHR, PO4

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7ZLR \| pdb_00007zlr	Download File View File

Crystal structure of SOCS2:ElonginB:ElonginC in complex with compound 13

Ramachandran, S., Ciulli, A., Makukhin, N.

(2023) Nat Commun 14: 6345-6345

Released	2023-04-26
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Homo sapiens
Macromolecule	Elongin-B (protein) Elongin-C (protein) Suppressor of cytokine signaling 2 (protein)
Unique Ligands	JH9

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7ZLS \| pdb_00007zls	Download File View File

co-crystal structure of SOCS2:ElonginB:ElonginC in complex with compound 13

Ramachandran, S., Ciulli, A., Makukhin, N.

(2023) Nat Commun 14: 6345-6345

Released	2023-04-26
Method	X-RAY DIFFRACTION 1.92 Å
Organisms	Homo sapiens
Macromolecule	Elongin-B (protein) Elongin-C (protein) Suppressor of cytokine signaling 2 (protein)
Unique Ligands	EDO, JH9

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8RQ1 \| pdb_00008rq1	Download File View File

Crystal structure of CRBN-midi

Kroupova, A., Zollman, D., Ciulli, A.

(2024) Nat Commun 15: 8885-8885

Released	2024-09-25
Method	X-RAY DIFFRACTION 3.11 Å
Organisms	Homo sapiens
Macromolecule	Protein cereblon (protein)
Unique Ligands	ZN

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8RQ8 \| pdb_00008rq8	Download File View File

Crystal structure of CRBN-midi in complex with mezigdomide

Zollman, D., Kroupova, A., Pethe, J., Ciulli, A.

(2024) Nat Commun 15: 8885-8885

Released	2024-09-25
Method	X-RAY DIFFRACTION 2.19 Å
Organisms	Homo sapiens
Macromolecule	Protein cereblon (protein)
Unique Ligands	QFC, ZN

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8RQ9 \| pdb_00008rq9	Download File View File

Crystal structure of PROTAC CFT-1297 in complex with CRBN-midi and BRD4(BD2)

Darren, D., Ramachandran, S., Kroupova, A., Zollman, D., Ciulli, A.

(2024) Nat Commun 15: 8885-8885

Released	2024-09-25
Method	X-RAY DIFFRACTION 2.91 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein) Protein cereblon (protein)
Unique Ligands	A1H2F, ZN

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8RQA \| pdb_00008rqa	Download File View File

Crystal structure of CRBN-midi in complex with Lenalidomide

Rutter, Z.J., Kroupova, A., Zollman, D., Ciulli, A.

(2024) Nat Commun 15: 8885-8885

Released	2024-09-25
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Protein cereblon (protein)
Unique Ligands	LVY, ZN

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8RQC \| pdb_00008rqc	Download File View File

Crystal structure of CRBN-midi in complex with mezigdomide and IKZF1 ZF2

Furihata, H., Kroupova, A., Zollman, D., Ciulli, A.

(2024) Nat Commun 15: 8885-8885

Released	2024-09-25
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Homo sapiens
Macromolecule	DNA-binding protein Ikaros (protein) Protein cereblon (protein)
Unique Ligands	QFC, ZN

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9GAO \| pdb_00009gao	Download File View File

Crystal structure of CRBNmidi in complex with 2-(4-(2,6-dioxopiperidin-3-yl)phenoxy)-N-methylacetamide

Rutter, Z.J., Kroupova, A., Zollman, D., Ciulli, A.

(2024) Nat Commun 15: 8885-8885

Released	2024-10-02
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	Protein cereblon (protein)
Unique Ligands	A1IJM, ZN

1 to 17 of 17 Structures

Page 1 of 1

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

5NQH | pdb_00005nqh

Structure of the human Fe65-PTB2 homodimer

5NT1 | pdb_00005nt1

Complex of influenza A NS1 effector domain with TRIM25 coiled coil

5NT2 | pdb_00005nt2

Complex of influenza A NS1 with TRIM25 coiled coil domain

6FLM | pdb_00006flm

Crystal structure of the human TRIM25 PRYSPRY domain

6FLN | pdb_00006fln

Crystal structure of the human TRIM25 coiled-coil and PRYSPRY domains

7ZLM | pdb_00007zlm

Crystal structure of SOCS2:ElonginB:ElonginC in complex with compound MN551

7ZLN | pdb_00007zln

Crystal structure of SOCS2:ElonginB:ElonginC in complex with compound 11

7ZLO | pdb_00007zlo

Crystal structure of SOCS2:ElonginB:ElonginC in complex with compound 12

7ZLP | pdb_00007zlp

Crystal structure of SOCS2:ElonginB:ElonginC in complex with compound 9

7ZLR | pdb_00007zlr

Crystal structure of SOCS2:ElonginB:ElonginC in complex with compound 13

7ZLS | pdb_00007zls

co-crystal structure of SOCS2:ElonginB:ElonginC in complex with compound 13

8RQ1 | pdb_00008rq1

Crystal structure of CRBN-midi

8RQ8 | pdb_00008rq8

Crystal structure of CRBN-midi in complex with mezigdomide

8RQ9 | pdb_00008rq9

Crystal structure of PROTAC CFT-1297 in complex with CRBN-midi and BRD4(BD2)

8RQA | pdb_00008rqa

Crystal structure of CRBN-midi in complex with Lenalidomide

8RQC | pdb_00008rqc

Crystal structure of CRBN-midi in complex with mezigdomide and IKZF1 ZF2

9GAO | pdb_00009gao

Crystal structure of CRBNmidi in complex with 2-(4-(2,6-dioxopiperidin-3-yl)phenoxy)-N-methylacetamide

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

5NQH | pdb_00005nqh

5NT1 | pdb_00005nt1

5NT2 | pdb_00005nt2

6FLM | pdb_00006flm

6FLN | pdb_00006fln

7ZLM | pdb_00007zlm

7ZLN | pdb_00007zln

7ZLO | pdb_00007zlo

7ZLP | pdb_00007zlp

7ZLR | pdb_00007zlr

7ZLS | pdb_00007zls

8RQ1 | pdb_00008rq1

8RQ8 | pdb_00008rq8

8RQ9 | pdb_00008rq9

8RQA | pdb_00008rqa

8RQC | pdb_00008rqc

9GAO | pdb_00009gao