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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Gao, Z."

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Search Summary

This query matches 136 Structures.

Refinements

Structure Determination Methodology

experimental (136)

Scientific Name of Source Organism

	Homo sapiens (47)
	Escherichia coli K-12 (8)
	Echovirus E6 (7)
	Pseudomonas aeruginosa (7)
	Candidatus Scalindua brodae (6)
	Pseudomonas aeruginosa PAO1 (6)
	Severe acute respiratory syndrome coronavirus 2 (6)
	metagenome (6)
	synthetic construct (6)
	Mus musculus (5)

More...

Taxonomy

	Eukaryota (62)
	Bacteria (52)
	Riboviria (17)
	other sequences (6)
	unclassified sequences (6)
	Duplodnaviria (5)
	Varidnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (90)
	ELECTRON MICROSCOPY (40)
	SOLUTION NMR (6)

Polymer Entity Type

	Protein (135)
	RNA (13)
	DNA (6)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (29)
	2.0 - 2.5 (32)
	2.5 - 3.0 (37)
	3.0 - 3.5 (26)
	3.5 - 4.0 (4)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (1)
	2010 - 2014 (22)
	2015 - 2019 (43)
	2020 - 2024 (68)
	2025 - 2029 (1)

Enzyme Classification Name

	Transferases (21)
	Hydrolases (20)
	Oxidoreductases (8)
	Isomerases (1)
	Lyases (1)

Membrane Protein Annotation

	PDBTM (16)
	MemProtMD (10)
	mpstruc (8)
	OPM (2)

Symmetry Type

	Asymmetric (64)
	Cyclic (46)
	Dihedral (21)
	Icosahedral (7)

SCOP Classification

	Alpha and beta proteins (a+b) (11)
	All beta proteins (8)
	Alpha and beta proteins (a/b) (5)
	All alpha proteins (2)
	Small proteins (3)
	Artifacts (1)

AllSelected

1 to 25 of 136 Structures

Page 1 of 6

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1BJH \| pdb_00001bjh	Download File View File

HAIRPIN LOOPS CONSISTING OF SINGLE ADENINE RESIDUES CLOSED BY SHEARED A(DOT)A AND G(DOT)G PAIRS FORMED BY THE DNA TRIPLETS AAA AND GAG: SOLUTION STRUCTURE OF THE D(GTACAAAGTAC) HAIRPIN, NMR, 16 STRUCTURES

Chou, S.-H., Zhu, L., Gao, Z., Cheng, J.-W., Reid, B.R.

(1996) J Mol Biology 264: 981

Released	1997-12-03
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(GPTPAPCPAPAPAPGPTPAP*C)-3') (nucleic acid)

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1HP5 \| pdb_00001hp5	Download File View File

STREPTOMYCES PLICATUS BETA-N-ACETYLHEXOSAMINIDASE COMPLEXED WITH INTERMEDIATE ANALOUGE NAG-THIAZOLINE

Mark, B.L.

(2001) J Biological Chem 276: 10330-10337

Released	2001-04-04
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Streptomyces plicatus
Macromolecule	BETA-N-ACETYLHEXOSAMINIDASE (protein)
Unique Ligands	CL, GOL, NGT, SO4

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2M0M \| pdb_00002m0m	Download File View File

Structural Characterization of Minor Ampullate Spidroin Domains and their Distinct Roles in Fibroin Solubility and Fiber Formation

Yang, D., Gao, Z., Lin, Z., Huang, W., Lai, C., Fan, J.

(2013) PLoS One 8: e56142-e56142

Released	2013-03-27
Method	SOLUTION NMR
Organisms	Trichonephila antipodiana
Macromolecule	Minor ampullate fibroin 1 (protein)

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2MA1 \| pdb_00002ma1	Download File View File

Solution structure of HRDC1 domain of RecQ helicase from Deinococcus radiodurans

Liu, S., Zhang, W., Gao, Z., Ming, Q., Hou, H., Lan, W., Wu, H., Cao, C., Dong, Y.

To be published

Released	2013-07-10
Method	SOLUTION NMR
Organisms	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539
Macromolecule	DNA helicase RecQ (protein)

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2MT3 \| pdb_00002mt3	Download File View File

Structure of -24 DNA binding domain of sigma 54 from E.coli

Wemmer, D., Gao, Z., Pelton, J.

To be published

Released	2015-08-26
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	RNA polymerase sigma-54 factor (protein)

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3VFE \| pdb_00003vfe	Download File View File

Virtual Screening and X-Ray Crystallography for Human Kallikrein 6 Inhibitors with an Amidinothiophene P1 Group

Chen, X., Zhang, Y., Xia, T., Wang, R.

(2012) ACS Med Chem Lett 3: 159-164

Released	2012-11-21
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Homo sapiens
Macromolecule	Kallikrein-6 (protein)
Unique Ligands	0HL

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4FVB \| pdb_00004fvb	Download File View File

Crystal structure of EV71 2A proteinase C110A mutant

Cai, Q., Muhammad, Y., Liu, W., Gao, Z., Peng, X., Cai, Y., Wu, C., Zheng, Q., Li, J., Lin, T.

(2013) J Virol 87: 7348-7356

Released	2013-06-19
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Enterovirus A71
Macromolecule	2A proteinase (protein)
Unique Ligands	ZN

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4FVD \| pdb_00004fvd	Download File View File

Crystal structure of EV71 2A proteinase C110A mutant in complex with substrate

Cai, Q., Muhammad, Y., Liu, W., Gao, Z., Peng, X., Cai, Y., Wu, C., Zheng, Q., Li, J., Lin, T.

(2013) J Virol 87: 7348-7356

Released	2013-06-19
Method	X-RAY DIFFRACTION 1.66 Å
Organisms	Enterovirus A71
Macromolecule	10-mer peptide from 2A proteinase (protein) 2A proteinase (protein)
Unique Ligands	ZN

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4HND \| pdb_00004hnd	Download File View File

Crystal structure of the catalytic domain of Selenomethionine substituted human PI4KIIalpha in complex with ADP

Zhou, Q., Zhai, Y., Zhang, K., Chen, C., Sun, F.

(2014) Nat Commun 5: 3552-3552

Released	2014-04-09
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	Phosphatidylinositol 4-kinase type 2-alpha (protein)
Unique Ligands	ADP

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4HNE \| pdb_00004hne	Download File View File

Crystal structure of the catalytic domain of human type II alpha Phosphatidylinositol 4-kinase (PI4KIIalpha) in complex with ADP

Zhou, Q., Zhai, Y., Zhang, K., Chen, C., Sun, F.

(2014) Nat Commun 5: 3552-3552

Released	2014-04-09
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Homo sapiens
Macromolecule	Phosphatidylinositol 4-kinase type 2-alpha (protein)
Unique Ligands	ADP

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4JKZ \| pdb_00004jkz	Download File View File

Crystal structure of ms6564 from mycobacterium smegmatis

Yang, S.F., Gao, Z.Q., He, Z.G., Dong, Y.H.

(2013) J Biological Chem 288: 23687-23695

Released	2013-06-26
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mycolicibacterium smegmatis MC2 155
Macromolecule	Transcriptional regulator, TetR family (protein)

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4JL3 \| pdb_00004jl3	Download File View File

Crystal structure of ms6564-dna complex

Yang, S.F., Gao, Z.Q., He, Z.G., Dong, Y.H.

(2013) J Biological Chem 288: 23687-23695

Released	2013-06-26
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mycolicibacterium smegmatis MC2 155
Macromolecule	Transcriptional regulator, TetR family (protein) DNA (31-MER) (nucleic acid)

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4LX3 \| pdb_00004lx3	Download File View File

Conserved Residues that Modulate Protein trans-Splicing of Npu DnaE Split Intein

Wu, Q., Gao, Z., Wei, Y., Ma, G., Zheng, Y., Dong, Y., Liu, Y.

(2014) Biochem J 461: 247-255

Released	2014-06-25
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Nostoc punctiforme PCC 73102
Macromolecule	DNA polymerase III, alpha subunit (protein) Nucleic acid binding, OB-fold, tRNA/helicase-type (protein)

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4ML0 \| pdb_00004ml0	Download File View File

Crystal structure of E.coli DinJ-YafQ complex

Liang, Y.J., Gao, Z.Q., Liu, Q.S., Dong, Y.H.

(2014) J Biological Chem 289: 21191-21202

Released	2014-06-25
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli B str. REL606
Macromolecule	Predicted antitoxin of YafQ-DinJ toxin-antitoxin system (protein) Predicted toxin of the YafQ-DinJ toxin-antitoxin system (protein)
Unique Ligands	SO4

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4ML2 \| pdb_00004ml2	Download File View File

Crystal structure of wild-type YafQ

Liang, Y.J., Gao, Z.Q., Liu, Q.S., Dong, Y.H.

(2014) J Biological Chem 289: 21191-21202

Released	2014-06-25
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Escherichia coli K-12
Macromolecule	mRNA interferase YafQ (protein)
Unique Ligands	SO4

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4MMG \| pdb_00004mmg	Download File View File

crystal structure of YafQ mutant H87Q from E.coli

Liang, Y.J., Gao, Z.Q., Liu, Q.S., Dong, Y.H.

(2014) J Biological Chem 289: 21191-21202

Released	2014-06-25
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Escherichia coli K-12
Macromolecule	mRNA interferase YafQ (protein)
Unique Ligands	SO4

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4MMJ \| pdb_00004mmj	Download File View File

crystal structure of YafQ from E.coli strain BL21(DE3)

Liang, Y., Gao, Z., Liu, Q., Dong, Y.

(2014) J Biological Chem 289: 21191-21202

Released	2014-06-25
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli BL21(DE3)
Macromolecule	Addiction module toxin, RelE/StbE family (protein)
Unique Ligands	SO4

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4MPS \| pdb_00004mps	Download File View File

Crystal structure of rat Beta-galactoside alpha-2,6-sialyltransferase 1 (ST6GAL1), Northeast Structural Genomics Consortium Target RnR367A

Forouhar, F., Meng, L., Milaninia, S., Seetharaman, J., Su, M., Kornhaber, G., Montelione, G.T., Hunt, J.F., Moremen, K.W., Tong, L., Northeast Structural Genomics Consortium (NESG)

(2013) J Biological Chem 288: 34680-34698

Released	2013-09-25
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Rattus norvegicus
Macromolecule	Beta-galactoside alpha-2,6-sialyltransferase 1 (protein)
Unique Ligands	NAG

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4NK4 \| pdb_00004nk4	Download File View File

Crystal structure of FabI from Candidatus Liberibacter asiaticus

Jiang, L., Gao, Z.Q., Dong, Y.H.

(2014) Protein Sci 23: 366-377

Released	2014-02-12
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Candidatus Liberibacter asiaticus
Macromolecule	Enoyl-[acyl-carrier-protein] reductase [NADH] (protein)
Unique Ligands	PEG

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4NK5 \| pdb_00004nk5	Download File View File

Crystal structure of FabI-NAD complex from Candidatus Liberibacter asiaticus

Jiang, L., Gao, Z.Q., Dong, Y.H.

(2014) Protein Sci 23: 366-377

Released	2014-02-12
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Candidatus Liberibacter asiaticus
Macromolecule	Enoyl-[acyl-carrier-protein] reductase [NADH] (protein)
Unique Ligands	NAD

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4NSO \| pdb_00004nso	Download File View File

Crystal structure of the effector-immunity protein complex

Dong, C.

(2014) FEBS Lett 588: 1891-1898

Released	2014-04-16
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Vibrio cholerae O1 biovar El Tor str. N16961
Macromolecule	Effector protein (protein) Immunity protein (protein)