RCSB PDB: Search

1MHW \| pdb_00001mhw	Download File View File

Design of non-covalent inhibitors of human cathepsin L. From the 96-residue proregion to optimized tripeptides

Chowdhury, S., Sivaraman, J., Wang, J., Devanathan, G., Lachance, P., Qi, H., Menard, R., Lefebvre, J., Konishi, Y., Cygler, M., Sulea, T., Purisima, E.O.

(2002) J Med Chem 45: 5321-5329

Released	2002-12-11
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	4-biphenylacetyl-Cys-(D)Arg-Tyr-N-(2-phenylethyl) amide (protein) Cathepsin L (protein)

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2GIO \| pdb_00002gio	Download File View File

Solution Structure of a portion of the 5'UTR of HspA mRNA of Bradyrhizobium japonicum

Chowdhury, S., Maris, C., Allain, F.H., Narberhaus, F.

(2006) EMBO J 25: 2487-2497

Released	2006-06-20
Method	SOLUTION NMR
Macromolecule	29-MER (nucleic acid)

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2GIP \| pdb_00002gip	Download File View File

Solution structure of a portion of the 5'UTR of HspA mRNA from Bradyrhizobium janponicum having deleted G83

Chowdhury, S., Maris, C., Allain, F.H., Narberhaus, F.

(2006) EMBO J 25: 2487-2497

Released	2006-06-20
Method	SOLUTION NMR
Macromolecule	28-MER (nucleic acid)

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2M71 \| pdb_00002m71	Download File View File

Solution structure of the a C-terminal domain of translation initiation factor IF-3 from Campylobacter jejuni

Harris, R., Ahmed, M., Attonito, J., Bonanno, J.B., Chamala, S., Chowdhury, S., Evans, B., Fiser, A., Glenn, A.S., Hammonds, J., Hillerich, B., Khafizov, K., Lafleur, J., Love, J.D., Seidel, R.D., Stead, M., Girvin, M.E., Almo, S.C., New York Structural Genomics Research Consortium (NYSGRC)

To be published

Released	2013-05-15
Method	SOLUTION NMR
Organisms	Campylobacter jejuni
Macromolecule	Translation initiation factor IF-3 (protein)

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2M72 \| pdb_00002m72	Download File View File

Solution structure of uncharacterized thioredoxin-like protein PG_2175 from Porphyromonas gingivalis

Harris, R., Ahmed, M., Attonito, J., Bonanno, J.B., Chamala, S., Chowdhury, S., Evans, B., Fiser, A., Glenn, A.S., Hammonds, J., Hillerich, B., Khafizov, K., Lafleur, J., Love, J.D., Seidel, R.D., Stead, M., Girvin, M.E., Almo, S.C., New York Structural Genomics Research Consortium (NYSGRC)

To be published

Released	2013-05-15
Method	SOLUTION NMR
Organisms	Porphyromonas gingivalis W83
Macromolecule	Uncharacterized thioredoxin-like protein (protein)

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3M0E \| pdb_00003m0e	Download File View File

Crystal structure of the ATP-bound state of Walker B mutant of NtrC1 ATPase domain

Chen, B., Sysoeva, T.A., Chowdhury, S., Rusu, M., Birmanns, S., Guo, L., Hanson, J., Yang, H., Nixon, B.T.

(2010) Structure 18: 1420-1430

Released	2010-11-03
Method	X-RAY DIFFRACTION 2.63 Å
Organisms	Aquifex aeolicus
Macromolecule	Transcriptional regulator (NtrC family) (protein)
Unique Ligands	ATP, MG

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3QR0 \| pdb_00003qr0	Download File View File

Crystal Structure of S. officinalis PLC21

Lyon, A.M., Northup, J.K., Tesmer, J.J.G.

(2011) Nat Struct Mol Biol 18: 999-1005

Released	2011-08-10
Method	X-RAY DIFFRACTION 2 Å
Organisms	Sepia officinalis
Macromolecule	phospholipase C-beta (PLC-beta) (protein)
Unique Ligands	CA, GOL

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3QR1 \| pdb_00003qr1	Download File View File

Crystal Structure of L. pealei PLC21

Lyon, A.M., Suddala, K.C., Northup, J.K., Tesmer, J.J.G.

(2011) Nat Struct Mol Biol 18: 999-1005

Released	2011-08-10
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Doryteuthis pealeii
Macromolecule	PHOSPHOLIPASE C-BETA (PLC-BETA) (protein)
Unique Ligands	CA

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3SJN \| pdb_00003sjn	Download File View File

Crystal structure of enolase Spea_3858 (target EFI-500646) from Shewanella pealeana with magnesium bound

Patskovsky, Y., Kim, J., Toro, R., Bhosle, R., Hillerich, B., Seidel, R.D., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Zencheck, W.D., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2011-07-06
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Shewanella pealeana ATCC 700345
Macromolecule	Mandelate racemase/muconate lactonizing protein (protein)
Unique Ligands	GOL, MG, UNL

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3T6C \| pdb_00003t6c	Download File View File

Crystal structure of an enolase from pantoea ananatis (efi target efi-501676) with bound d-gluconate and mg

Vetting, M.W., Toro, R., Bhosle, R., Wasserman, S.R., Morisco, L.L., Hillerich, B., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Zencheck, W.D., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2011-08-31
Method	X-RAY DIFFRACTION 1.598 Å
Organisms	Pantoea ananatis LMG 20103
Macromolecule	Putative ManD family dehydratase (protein)
Unique Ligands	CL, EDO, GCO, MG, UNX

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3THU \| pdb_00003thu	Download File View File

Crystal structure of an enolase from sphingomonas sp. ska58 (efi target efi-501683) with bound mg

Vetting, M.W., Toro, R., Bhosle, R., Wasserman, S.R., Morisco, L.L., Hillerich, B., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Zencheck, W.D., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2011-09-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Sphingomonas sp. SKA58
Macromolecule	Mandelate racemase / muconate lactonizing enzyme family protein (protein)
Unique Ligands	CL, GOL, MG, UNX

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3TJI \| pdb_00003tji	Download File View File

CRYSTAL STRUCTURE OF AN ENOLASE FROM ENTEROBACTER sp. 638 (EFI TARGET EFI-501662) with BOUND MG

Vetting, M.W., Toro, R., Bhosle, R., Wasserman, S.R., Morisco, L.L., Hillerich, B., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Zencheck, W.D., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2011-09-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Enterobacter sp. 638
Macromolecule	Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein (protein)
Unique Ligands	CL, GOL, MG

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3TOT \| pdb_00003tot	Download File View File

Crystal structure of GLUTATHIONE TRANSFERASE (TARGET EFI-501058) from Ralstonia solanacearum GMI1000

Patskovsky, Y., Toro, R., Bhosle, R., Zencheck, W.D., Hillerich, B., Seidel, R.D., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Imker, H.J., Armstrong, R.N., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2011-09-21
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Ralstonia solanacearum
Macromolecule	Glutathione s-transferase protein (protein)
Unique Ligands	ACT

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3TOU \| pdb_00003tou	Download File View File

Crystal structure of GLUTATHIONE TRANSFERASE (TARGET EFI-501058) from Ralstonia solanacearum GMI1000 with GSH bound

Patskovsky, Y., Toro, R., Bhosle, R., Zencheck, W.D., Hillerich, B., Seidel, R.D., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Imker, H.J., Armstrong, R.N., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2011-09-21
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Ralstonia solanacearum
Macromolecule	Glutathione s-transferase protein (protein)
Unique Ligands	ACT, GSH

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3TOY \| pdb_00003toy	Download File View File

CRYSTAL STRUCTURE OF ENOLASE BRADO_4202 (TARGET EFI-501651) FROM Bradyrhizobium sp. ORS278 WITH CALCIUM AND ACETATE BOUND

Patskovsky, Y., Kim, J., Toro, R., Bhosle, R., Hillerich, B., Seidel, R.D., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammond, J., Zencheck, W.D., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2011-09-21
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bradyrhizobium sp. ORS 278
Macromolecule	Mandelate racemase/muconate lactonizing enzyme family protein (protein)
Unique Ligands	ACT, CA, NI, P4C

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3TTE \| pdb_00003tte	Download File View File

Crystal structure of enolase brado_4202 (target EFI-501651) from Bradyrhizobium complexed with magnesium and mandelic acid

Patskovsky, Y., Kim, J., Toro, R., Bhosle, R., Hillerich, B., Seidel, R.D., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammond, J., Zencheck, W.D., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2011-09-28
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bradyrhizobium sp. ORS 278
Macromolecule	Mandelate racemase/muconate lactonizing enzyme (protein)
Unique Ligands	FMT, GOL, MG, SMN

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3TW9 \| pdb_00003tw9	Download File View File

Crystal structure of gluconate dehydratase (TARGET EFI-501679) from Salmonella enterica subsp. enterica serovar Enteritidis str. P125109

Patskovsky, Y., Toro, R., Bhosle, R., Hillerich, B., Seidel, R.D., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Zencheck, W.D., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2011-10-26
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Salmonella enterica subsp. enterica serovar Enteritidis str. P125109
Macromolecule	Putative dehydratase (protein)
Unique Ligands	CL, GOL

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3TWA \| pdb_00003twa	Download File View File

Crystal structure of gluconate dehydratase (TARGET EFI-501679) from Salmonella enterica subsp. enterica serovar Enteritidis str. P125109 complexed with magnesium and glycerol

Patskovsky, Y., Toro, R., Bhosle, R., Hillerich, B., Seidel, R.D., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Zencheck, W.D., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2011-10-26
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Salmonella enterica subsp. enterica serovar Enteritidis str. P125109
Macromolecule	Putative dehydratase (protein)
Unique Ligands	CL, GOL, MG

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3TWB \| pdb_00003twb	Download File View File

Crystal structure of gluconate dehydratase (TARGET EFI-501679) from Salmonella enterica subsp. enterica serovar Enteritidis str. P125109 complexed with magnesium and gluconic acid

Patskovsky, Y., Toro, R., Bhosle, R., Hillerich, B., Seidel, R.D., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Zencheck, W.D., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2011-10-26
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Salmonella enterica subsp. enterica serovar Enteritidis str. P125109
Macromolecule	Putative dehydratase (protein)
Unique Ligands	CL, GCO, GOL, MG

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3UAP \| pdb_00003uap	Download File View File

Crystal structure of glutathione transferase (TARGET EFI-501774) from methylococcus capsulatus str. bath

Patskovsky, Y., Toro, R., Bhosle, R., Zencheck, W.D., Hillerich, B., Seidel, R.D., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Imker, H.J., Armstrong, R.N., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2011-11-02
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Methylococcus capsulatus str. Bath
Macromolecule	Glutathione S-transferase (protein)
Unique Ligands	GOL

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3UAR \| pdb_00003uar	Download File View File

Crystal structure of glutathione transferase (TARGET EFI-501774) from methylococcus capsulatus str. bath with gsh bound

Patskovsky, Y., Toro, R., Bhosle, R., Zencheck, W.D., Hillerich, B., Seidel, R.D., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Imker, H.J., Armstrong, R.N., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2011-11-02
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Methylococcus capsulatus str. Bath
Macromolecule	Glutathione S-transferase (protein)
Unique Ligands	GOL, GSH

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3UBB \| pdb_00003ubb	Download File View File

The crystal structure of GlpG in complex with a phosphonofluoridate inhibitor

Xue, Y., Ha, Y.

(2012) Biochemistry 51: 3723-3731

Released	2012-06-13
Method	X-RAY DIFFRACTION 2.601 Å
Organisms	Escherichia coli K-12
Macromolecule	Rhomboid protease glpG (protein)
Unique Ligands	3UB

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3UBK \| pdb_00003ubk	Download File View File

Crystal structure of glutathione transferase (TARGET EFI-501770) from leptospira interrogans

Patskovsky, Y., Toro, R., Bhosle, R., Zencheck, W.D., Hillerich, B., Seidel, R.D., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Imker, H.J., Armstrong, R.N., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2011-11-09
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Leptospira interrogans serovar Lai str. 56601
Macromolecule	Glutathione transferase (protein)
Unique Ligands	CL, GOL, SO4

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3UBL \| pdb_00003ubl	Download File View File

Crystal structure of glutathione transferase (TARGET EFI-501770) from leptospira interrogans with gsh bound

Patskovsky, Y., Toro, R., Bhosle, R., Zencheck, W.D., Hillerich, B., Seidel, R.D., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Imker, H.J., Armstrong, R.N., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2011-11-09
Method	X-RAY DIFFRACTION 2 Å
Organisms	Leptospira interrogans serovar Lai str. 56601
Macromolecule	Glutathione transferase (protein)
Unique Ligands	CL, GOL, GSH, SO4, UNX

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3UF0 \| pdb_00003uf0	Download File View File

Crystal structure of a putative NAD(P) dependent gluconate 5-dehydrogenase from Beutenbergia cavernae(EFI target EFI-502044) with bound NADP (low occupancy)

Vetting, M.W., Toro, R., Bhosle, R., Hillerich, B., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Zencheck, W.D., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2011-11-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Beutenbergia cavernae DSM 12333
Macromolecule	Short-chain dehydrogenase/reductase SDR (protein)
Unique Ligands	NAP

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1MHW | pdb_00001mhw

2GIO | pdb_00002gio

2GIP | pdb_00002gip

2M71 | pdb_00002m71

2M72 | pdb_00002m72

3M0E | pdb_00003m0e

3QR0 | pdb_00003qr0

3QR1 | pdb_00003qr1

3SJN | pdb_00003sjn

3T6C | pdb_00003t6c

3THU | pdb_00003thu

3TJI | pdb_00003tji

3TOT | pdb_00003tot

3TOU | pdb_00003tou

3TOY | pdb_00003toy

3TTE | pdb_00003tte

3TW9 | pdb_00003tw9

3TWA | pdb_00003twa

3TWB | pdb_00003twb

3UAP | pdb_00003uap

3UAR | pdb_00003uar

3UBB | pdb_00003ubb

3UBK | pdb_00003ubk

3UBL | pdb_00003ubl

3UF0 | pdb_00003uf0