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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Cheng, T.C."

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Search Summary

This query matches 14 Structures.

Refinements

Structure Determination Methodology

experimental (14)

Scientific Name of Source Organism

	Homo sapiens (9)
	Saccharomyces cerevisiae (4)
	Corynebacterium glutamicum ATCC 13032 (2)
	Bos taurus (1)
	Branchiostoma belcheri (1)
	Drosophila melanogaster (1)
	Human immunodeficiency virus 1 (1)
	Xenopus laevis (1)
	synthetic construct (1)

Taxonomy

	Eukaryota (12)
	Bacteria (2)
	Riboviria (1)
	other sequences (1)

Experimental Method

	ELECTRON MICROSCOPY (12)
	X-RAY DIFFRACTION (2)

Polymer Entity Type

	Protein (14)
	DNA (1)
	NA-hybrid (1)

Refinement Resolution (Å)

	2.5 - 3.0 (3)
	3.0 - 3.5 (2)
	3.5 - 4.0 (1)
	4.0 - 4.5 (3)
	> 4.5 (5)

Release Date

	2015 - 2019 (6)
	2020 - 2024 (8)

Enzyme Classification Name

	Hydrolases (8)
	Translocases (2)
	Transferases (1)

Membrane Protein Annotation

	MemProtMD (2)
	OPM (2)
	PDBTM (2)
	mpstruc (2)

Symmetry Type

	Cyclic (6)
	Asymmetric (6)
	Dihedral (3)

AllSelected

1 to 14 of 14 Structures

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5JUL \| pdb_00005jul	Download File View File

Near atomic structure of the Dark apoptosome

Cheng, T.C., Akey, I.V., Yuan, S., Yu, Z., Ludtke, S.J., Akey, C.W.

(2017) Structure 25: 40-52

Released	2017-02-22
Method	ELECTRON MICROSCOPY 4.4 Å
Organisms	Drosophila melanogaster
Macromolecule	Apaf-1 related killer DARK (protein)
Unique Ligands	DTP

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5JUY \| pdb_00005juy	Download File View File

Active human apoptosome with procaspase-9

Cheng, T.C., Hong, C., Akey, I.V., Yuan, S., Akey, C.W.

(2016) Elife 5:

Released	2016-10-19
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Bos taurus Homo sapiens
Macromolecule	Apoptotic protease-activating factor 1 (protein) Caspase-9 (protein) Cytochrome c (protein)
Unique Ligands	DTP, HEC

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5K5S \| pdb_00005k5s	Download File View File

Crystal structure of the active form of human calcium-sensing receptor extracellular domain

Geng, Y., Mosyak, L., Kurinov, I., Zuo, H., Sturchler, E., Cheng, T.C., Subramanyam, P., Brown, A.P., Brennan, S.C., Mun, H.-C., Bush, M., Chen, Y., Nguyen, T., Cao, B., Chang, D., Quick, M., Conigrave, A., Colecraft, H.M., McDonald, P., Fan, Q.R.

(2016) Elife 5:

Released	2016-08-03
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Extracellular calcium-sensing receptor (protein)
Unique Ligands	CA, NAG, PO4, TRP

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5K5T \| pdb_00005k5t	Download File View File

Crystal structure of the inactive form of human calcium-sensing receptor extracellular domain

(2016) Elife 5:

Released	2016-08-03
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	Extracellular calcium-sensing receptor (protein)
Unique Ligands	CA, NAG, SO4

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6B40 \| pdb_00006b40	Download File View File

BbRAGL-3'TIR synaptic complex with nicked DNA refined with C2 symmetry

Zhang, Y., Cheng, T.C., Xiong, Y., Schatz, D.G.

(2019) Nature 569: 79-84

Released	2019-03-20
Method	ELECTRON MICROSCOPY 4.3 Å
Organisms	Branchiostoma belcheri
Macromolecule	RAG1L,RAG1L (protein) RAG2L (protein) 31TIR intact strand (nucleic acid) 31TIR pre-nicked strand of flanking DNA (nucleic acid) 31TIR pre-nicked strand of signal DNA (nucleic acid)
Unique Ligands	CA, ZN

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6NIL \| pdb_00006nil	Download File View File

cryoEM structure of the truncated HIV-1 Vif/CBFbeta/A3F complex

Hu, Y., Xiong, Y.

(2019) Nat Struct Mol Biol 26: 1176-1183

Released	2019-12-11
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Core-binding factor subunit beta (protein) DNA dC->dU-editing enzyme APOBEC-3F (protein) Virion infectivity factor (protein)
Unique Ligands	ZN

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7QHM \| pdb_00007qhm	Download File View File

Cytochrome bcc-aa3 supercomplex (respiratory supercomplex III2/IV2) from Corynebacterium glutamicum (stigmatellin and azide bound)

Kao, W.-C., Hunte, C.

(2022) Nat Commun 13: 545-545

Released	2022-05-18
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Corynebacterium glutamicum ATCC 13032
Macromolecule	Unique protein chains: 13
Unique Ligands	3PE, 9YF, AZI, CA, CDL, CU, CUA, DGA, FES, HAS, HEC, HEM, IX7, IZL, LMT, LYC, MN, MQ9, OXY, PLM, SMA

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7QHO \| pdb_00007qho	Download File View File

Cytochrome bcc-aa3 supercomplex (respiratory supercomplex III2/IV2) from Corynebacterium glutamicum (as isolated)

Kao, W.-C., Hunte, C.

(2022) Nature Communications 13: 545

Released	2022-05-18
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Corynebacterium glutamicum ATCC 13032
Macromolecule	Unique protein chains: 13
Unique Ligands	3PE, 3PH, 9YF, CA, CDL, CU, CUA, DGA, FES, HAS, HEC, HEM, IX7, IZL, LMT, LYC, MN, MQ9, PLM

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7QO3 \| pdb_00007qo3	Download File View File

Structure of the 26S proteasome-Ubp6 complex in the si state (Core Particle and Lid)

Hung, K.Y.S., Klumpe, S., Eisele, M.R., Elsasser, S., Geng, T.T., Cheng, T.C., Joshi, T., Rudack, T., Sakata, E., Finley, D.

(2022) Nat Commun 13: 838-838

Released	2022-04-13
Method	ELECTRON MICROSCOPY 6.1 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 27

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7QO4 \| pdb_00007qo4	Download File View File

26S proteasome WT-Ubp6-UbVS complex in the si state (ATPases, Rpn1, Ubp6, and UbVS)

Hung, K.Y.S., Klumpe, S., Eisele, M.R., Elsasser, S., Geng, T.T., Cheng, C., Joshi, T., Rudack, T., Sakata, E., Finley, D.

(2022) Nat Commun 13: 838

Released	2022-06-01
Method	ELECTRON MICROSCOPY 7 Å
Organisms	Homo sapiens Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 9
Unique Ligands	ADP, ATP, MG

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7QO5 \| pdb_00007qo5	Download File View File

26S proteasome Rpt1-RK -Ubp6-UbVS complex in the si state

Hung, K.Y.S., Klumpe, S., Eisele, M.R., Elsasser, S., Geng, T.T., Cheng, T.C., Joshi, T., Rudack, T., Sakata, E., Finley, D.

(2022) Nat Commun 13: 838-838

Released	2022-03-16
Method	ELECTRON MICROSCOPY 6 Å
Organisms	Homo sapiens Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 35
Unique Ligands	ADP, ATP, MG

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7QO6 \| pdb_00007qo6	Download File View File

26S proteasome Rpt1-RK -Ubp6-UbVS complex in the s2 state

Hung, K.Y.S., Klumpe, S., Eisele, M.R., Elsasser, S., Geng, T.T., Cheng, T.C., Joshi, T., Rudack, T., Sakata, E., Finley, D.

(2022) Nat Commun 13: 838-838

Released	2022-03-16
Method	ELECTRON MICROSCOPY 6.3 Å
Organisms	Homo sapiens Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 35
Unique Ligands	ADP, ATP, MG

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8AAG \| pdb_00008aag	Download File View File

H1-bound palindromic nucleosome, state 1

Alegrio Louro, J., Beinsteiner, B., Cheng, T.C., Patel, A.K.M., Boopathi, R., Angelov, D., Hamiche, A., Bednar, J., Kale, S., Dimitrov, S., Klaholz, B.

(2023) Structure 31: 201

Released	2022-12-14
Method	ELECTRON MICROSCOPY 10 Å
Organisms	Homo sapiens Xenopus laevis synthetic construct
Macromolecule	Unique protein chains: 5 Unique nucleic acid hybrid chains: 2

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8OOI \| pdb_00008ooi	Download File View File

Full composite cryo-EM map of p97/VCP in ADP.Pi state

Cheng, T.C., Sakata, E., Schuetz, A.K.

(2024) Nat Chem 16: 363-372

Released	2024-01-31
Method	ELECTRON MICROSCOPY 2.61 Å
Organisms	Homo sapiens
Macromolecule	Transitional endoplasmic reticulum ATPase (protein)
Unique Ligands	ADP, ATP, K, MG, PO4

1 to 14 of 14 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

5JUL | pdb_00005jul

Near atomic structure of the Dark apoptosome

5JUY | pdb_00005juy

Active human apoptosome with procaspase-9

5K5S | pdb_00005k5s

Crystal structure of the active form of human calcium-sensing receptor extracellular domain

5K5T | pdb_00005k5t

Crystal structure of the inactive form of human calcium-sensing receptor extracellular domain

6B40 | pdb_00006b40

BbRAGL-3'TIR synaptic complex with nicked DNA refined with C2 symmetry

6NIL | pdb_00006nil

cryoEM structure of the truncated HIV-1 Vif/CBFbeta/A3F complex

7QHM | pdb_00007qhm

Cytochrome bcc-aa3 supercomplex (respiratory supercomplex III2/IV2) from Corynebacterium glutamicum (stigmatellin and azide bound)

7QHO | pdb_00007qho

Cytochrome bcc-aa3 supercomplex (respiratory supercomplex III2/IV2) from Corynebacterium glutamicum (as isolated)

7QO3 | pdb_00007qo3

Structure of the 26S proteasome-Ubp6 complex in the si state (Core Particle and Lid)

7QO4 | pdb_00007qo4

26S proteasome WT-Ubp6-UbVS complex in the si state (ATPases, Rpn1, Ubp6, and UbVS)

7QO5 | pdb_00007qo5

26S proteasome Rpt1-RK -Ubp6-UbVS complex in the si state

7QO6 | pdb_00007qo6

26S proteasome Rpt1-RK -Ubp6-UbVS complex in the s2 state

8AAG | pdb_00008aag

H1-bound palindromic nucleosome, state 1

8OOI | pdb_00008ooi

Full composite cryo-EM map of p97/VCP in ADP.Pi state

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

5JUL | pdb_00005jul

5JUY | pdb_00005juy

5K5S | pdb_00005k5s

5K5T | pdb_00005k5t

6B40 | pdb_00006b40

6NIL | pdb_00006nil

7QHM | pdb_00007qhm

7QHO | pdb_00007qho

7QO3 | pdb_00007qo3

7QO4 | pdb_00007qo4

7QO5 | pdb_00007qo5

7QO6 | pdb_00007qo6

8AAG | pdb_00008aag

8OOI | pdb_00008ooi