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233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Azuma, Y."

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Search Summary

This query matches 11 Structures.

Refinements

Structure Determination Methodology

experimental (11)

Scientific Name of Source Organism

	Aquifex aeolicus VF5 (7)
	Geobacillus stearothermophilus (2)
	Homo sapiens (2)

Taxonomy

	Bacteria (9)
	Eukaryota (2)

Experimental Method

	ELECTRON MICROSCOPY (9)
	X-RAY DIFFRACTION (2)

Polymer Entity Type

Protein (11)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (2)
	2.5 - 3.0 (5)
	3.0 - 3.5 (3)

Release Date

	2020 - 2024 (4)
	2025 - 2029 (7)

Enzyme Classification Name

Transferases (7)

Symmetry Type

	Cyclic (4)
	Asymmetric (2)
	Octahedral (2)
	Tetrahedral (2)
	Icosahedral (1)

SCOP Classification

All beta proteins (2)

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1 to 11 of 11 Structures

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7DC7 \| pdb_00007dc7	Download File View File

Crystal structure of D12 Fab-ATP complex

Kawauchi, H., Fukami, T.A., Tatsumi, K., Torizawa, T., Mimoto, F.

(2020) Cell Rep 33: 108542-108542

Released	2021-01-13
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Homo sapiens
Macromolecule	D12 Fab heavy chain (protein) D12 Fab light chain (protein)
Unique Ligands	ATP

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7DC8 \| pdb_00007dc8	Download File View File

Crystal structure of Switch Ab Fab and hIL6R in complex with ATP

Kadono, S., Fukami, T.A., Kawauchi, H., Torizawa, T., Mimoto, F.

(2020) Cell Rep 33: 108542-108542

Released	2021-01-13
Method	X-RAY DIFFRACTION 2.757 Å
Organisms	Homo sapiens
Macromolecule	Interleukin-6 receptor subunit alpha (protein) Switch Ab Fab heavy chain (protein) Switch Ab Fab light chain (protein)
Unique Ligands	ATP, SO4

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8R59 \| pdb_00008r59	Download File View File

Structure of the Co(II) triggered TRAP (S33HK35H) protein cage (levo form)

Biela, A.P., Heddle, J.G.

(2024) Macromol Rapid Commun e2400712-e2400712

Released	2024-12-25
Method	ELECTRON MICROSCOPY 2.86 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	Transcription attenuation protein MtrB (protein)
Unique Ligands	CO

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8R5A \| pdb_00008r5a	Download File View File

Structure of the Co(II) triggered TRAP (S33HK35H) protein cage (dextro form)

Biela, A.P., Heddle, J.G.

(2024) Macromol Rapid Commun e2400712-e2400712

Released	2024-12-25
Method	ELECTRON MICROSCOPY 2.84 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	Transcription attenuation protein MtrB (protein)
Unique Ligands	CO