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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Aik, W."

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Search Summary

This query matches 20 Structures.

Refinements

Structure Determination Methodology

experimental (20)

Scientific Name of Source Organism

	Homo sapiens (7)
	Escherichia coli K-12 (4)
	Pseudomonas putida KT2440 (3)
	Saccharomyces cerevisiae S288C (3)
	Pseudomonas aeruginosa (2)
	Bacillus cereus (1)

Taxonomy

	Bacteria (10)
	Eukaryota (10)

Experimental Method

X-RAY DIFFRACTION (20)

Polymer Entity Type

Protein (20)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (7)
	2.0 - 2.5 (8)
	2.5 - 3.0 (3)

Release Date

2010 - 2014 (20)

Enzyme Classification Name

	Oxidoreductases (14)
	Hydrolases (1)

Symmetry Type

	Asymmetric (19)
	Cyclic (2)

SCOP Classification

	All beta proteins (9)
	Alpha and beta proteins (a/b) (2)
	Alpha and beta proteins (a+b) (3)
	Artifacts (1)

AllSelected

1 to 20 of 20 Structures

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3T3Y \| pdb_00003t3y	Download File View File

Crystal structure of AlkB in complex with Fe(III) and 2-(3-hydroxypicolinomido)acetic acid

Aik, W.S., McDonough, M.A., Schofield, C.J.

(2012) J Med Chem 55: 2173-2184

Released	2012-03-07
Method	X-RAY DIFFRACTION 2.001 Å
Organisms	Escherichia coli K-12
Macromolecule	Alpha-ketoglutarate-dependent dioxygenase AlkB (protein)
Unique Ligands	FE, MD6

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3T4H \| pdb_00003t4h	Download File View File

Crystal Structure of AlkB in complex with Fe(III) and N-Oxalyl-S-(3-nitrobenzyl)-L-cysteine

Ma, J., Aik, W.S., McDonough, M.A., Schofield, C.J.

(2012) J Med Chem 55: 2173-2184

Released	2012-03-07
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Escherichia coli K-12
Macromolecule	Alpha-ketoglutarate-dependent dioxygenase AlkB (protein)
Unique Ligands	EPE, FE, MD5

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3T4V \| pdb_00003t4v	Download File View File

Crystal Structure of AlkB in complex with Fe(III) and N-Oxalyl-S-(2-napthalenemethyl)-L-cysteine

Aik, W.S., McDonough, M.A., Schofield, C.J.

(2012) J Med Chem 55: 2173-2184

Released	2012-03-07
Method	X-RAY DIFFRACTION 1.732 Å
Organisms	Escherichia coli K-12
Macromolecule	Alpha-ketoglutarate-dependent dioxygenase AlkB (protein)
Unique Ligands	FE, GOL, MD3

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4BIO \| pdb_00004bio	Download File View File

FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH 8-HYDROXYQUINOLINE-5- CARBOXYLIC ACID

Chowdhury, R., Schofield, C.J.

(2013) Chem Sci 4: 3110-3117

Released	2013-04-24
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Homo sapiens
Macromolecule	HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR (protein)
Unique Ligands	8XQ, FE, GOL, SO4

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4BIS \| pdb_00004bis	Download File View File

JMJD2A COMPLEXED WITH 8-HYDROXYQUINOLINE-4-CARBOXYLIC ACID

Chowdhury, R., Thinnes, C., Schofield, C.J.

(2013) Chem Sci 4: 3110-3117

Released	2014-02-05
Method	X-RAY DIFFRACTION 2.493 Å
Organisms	Homo sapiens
Macromolecule	LYSINE-SPECIFIC DEMETHYLASE 4A (protein)
Unique Ligands	8HQ, CL, GOL, NI, ZN

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4IW3 \| pdb_00004iw3	Download File View File

Crystal structure of a Pseudomonas putida prolyl-4-hydroxylase (P4H) in complex with elongation factor Tu (EF-Tu)

Scotti, J.S., McDonough, M.A., Schofield, C.J.

(2014) Proc Natl Acad Sci U S A 111: 13331-13336

Released	2014-01-29
Method	X-RAY DIFFRACTION 2.697 Å
Organisms	Pseudomonas putida KT2440
Macromolecule	Elongation factor Tu-A (protein) Putative uncharacterized protein (protein)
Unique Ligands	GDP, MG, MN, OGA

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4J0Q \| pdb_00004j0q	Download File View File

Crystal structure of Pseudomonas putida elongation factor Tu (EF-Tu)

Scotti, J.S., McDonough, M.A., Schofield, C.J.

(2014) Proc Natl Acad Sci U S A 111: 13331-13336

Released	2014-02-05
Method	X-RAY DIFFRACTION 2.294 Å
Organisms	Pseudomonas putida KT2440
Macromolecule	Elongation factor Tu-A (protein)
Unique Ligands	GDP, MES, MG, MPD

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4J25 \| pdb_00004j25	Download File View File

Crystal structure of a Pseudomonas putida prolyl-4-hydroxylase (P4H)

Scotti, J.S., McDonough, M.A., Schofield, C.J.

(2014) Proc Natl Acad Sci U S A 111: 13331-13336

Released	2014-02-05
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Pseudomonas putida KT2440
Macromolecule	Putative uncharacterized protein (protein)
Unique Ligands	MN, OGA

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4JHT \| pdb_00004jht	Download File View File

Crystal Structure of AlkB in complex with 5-carboxy-8-hydroxyquinoline (IOX1)

Aik, W.S., McDonough, M.A., Schofield, C.J.

(2013) Chem Sci 4: 3110-3117

Released	2013-06-26
Method	X-RAY DIFFRACTION 1.18 Å
Organisms	Escherichia coli K-12
Macromolecule	Alpha-ketoglutarate-dependent dioxygenase AlkB (protein)
Unique Ligands	8XQ, ACT, DMS, MN

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4NHK \| pdb_00004nhk	Download File View File

Crystal structure of Tpa1p from Saccharomyces cerevisiae, termination and polyadenylation protein 1, in complex with pyridine-2,4-dicarboxylic acid (2,4-PDCA)

Scotti, J.S., McDonough, M.A., Schofield, C.J.

(2015) Structure 23: 639-652

Released	2014-11-19
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	PKHD-type hydroxylase TPA1 (protein)
Unique Ligands	GOL, MN, PD2

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4NHL \| pdb_00004nhl	Download File View File

Crystal structure of Tpa1p from Saccharomyces cerevisiae, termination and polyadenylation protein 1, in complex with N-oxalylglycine (NOG)

Scotti, J.S., McDonough, M.A., Schofield, C.J.

(2015) Structure 23: 639-652

Released	2014-11-19
Method	X-RAY DIFFRACTION 2.84 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	PKHD-type hydroxylase TPA1 (protein)
Unique Ligands	MN, OGA

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4NHM \| pdb_00004nhm	Download File View File

Crystal structure of Tpa1p from Saccharomyces cerevisiae, termination and polyadenylation protein 1, in complex with N-[(1-chloro-4-hydroxyisoquinolin-3-yl)carbonyl]glycine (IOX3/UN9)

Scotti, J.S., McDonough, M.A., Schofield, C.J.

(2015) Structure 23: 639-652

Released	2014-11-19
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	PKHD-type hydroxylase TPA1 (protein)
Unique Ligands	GOL, MN, UN9

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4NHX \| pdb_00004nhx	Download File View File

Crystal structure of human OGFOD1, 2-oxoglutarate and iron-dependent oxygenase domain containing 1, in complex with N-oxalylglycine (NOG)

Horita, S., McDonough, M.A., Schofield, C.J.

(2015) Structure 23: 639-652

Released	2014-11-19
Method	X-RAY DIFFRACTION 2.105 Å
Organisms	Homo sapiens
Macromolecule	2-oxoglutarate and iron-dependent oxygenase domain-containing protein 1 (protein)
Unique Ligands	GOL, MN, NA, OGA

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4NHY \| pdb_00004nhy	Download File View File

Crystal structure of human OGFOD1, 2-oxoglutarate and iron-dependent oxygenase domain containing 1, in complex with pyridine-2,4-dicarboxylic acid (2,4-PDCA)

Horita, S., McDonough, M.A., Schofield, C.J.

(2015) Structure 23: 639-652

Released	2014-11-19
Method	X-RAY DIFFRACTION 2.603 Å
Organisms	Homo sapiens
Macromolecule	2-oxoglutarate and iron-dependent oxygenase domain-containing protein 1 (protein)
Unique Ligands	GOL, MN, PD2

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4NJ4 \| pdb_00004nj4	Download File View File

Crystal Structure of Human ALKBH5

Aik, W.S., McDonough, M.A., Schofield, C.J.

(2014) Nucleic Acids Res 42: 4741-4754

Released	2014-01-15
Method	X-RAY DIFFRACTION 2.02 Å
Organisms	Homo sapiens
Macromolecule	RNA demethylase ALKBH5 (protein)
Unique Ligands	GOL, MN, NO3, UN9

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4O61 \| pdb_00004o61	Download File View File

Structure of human ALKBH5 crystallized in the presence of citrate

Tempel, W., Chao, X., Liu, K., Dong, A., Cerovina, T., He, H., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Min, J., Structural Genomics Consortium (SGC)

(2014) J Biological Chem 289: 17299-17311

Released	2014-02-26
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	RNA demethylase ALKBH5 (protein)
Unique Ligands	CIT, GOL, UNL, UNX

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4OCT \| pdb_00004oct	Download File View File

Crystal structure of human ALKBH5 crystallized in the presence of Mn^{2+} and 2-oxoglutarate

Tempel, W., Chao, X., Liu, K., Dong, A., Cerovina, T., He, H., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Min, J., Structural Genomics Consortium (SGC)

(2014) J Biological Chem 289: 17299-17311

Released	2014-04-16
Method	X-RAY DIFFRACTION 2.28 Å
Organisms	Homo sapiens
Macromolecule	RNA demethylase ALKBH5 (protein)
Unique Ligands	AKG, MN, UNX

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4PVO \| pdb_00004pvo	Download File View File

Crystal Structure of VIM-2 metallo-beta-lactamase in complex with ML302 and ML302F

Aik, W.S., Brem, J., McDonough, M.A., Schofield, C.J.

(2014) Nat Chem 6: 1084-1090

Released	2014-11-19
Method	X-RAY DIFFRACTION 1.48 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Beta-lactamase class B VIM-2 (protein)
Unique Ligands	DMS, FMT, S3C, SVB, ZN

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4PVT \| pdb_00004pvt	Download File View File

Crystal Structure of VIM-2 metallo-beta-lactamase in complex with ML302F

Aik, W.S., Brem, J., McDonough, M.A., Schofield, C.J.

(2014) Nat Chem 6: 1084-1090

Released	2014-11-19
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Beta-lactamase class B VIM-2 (protein)
Unique Ligands	FMT, GOL, S3C, ZN

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4TYT \| pdb_00004tyt	Download File View File

Crystal Structure of BcII metallo-beta-lactamase in complex with ML302F

Brem, J., van Berkel, S.S., McDonough, M.A., Schofield, C.J.

(2014) Nat Chem 6: 1084-1090

Released	2014-11-26
Method	X-RAY DIFFRACTION 1.799 Å
Organisms	Bacillus cereus
Macromolecule	Beta-lactamase 2 (protein)
Unique Ligands	GOL, S3C, SO4, ZN

1 to 20 of 20 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

3T3Y | pdb_00003t3y

Crystal structure of AlkB in complex with Fe(III) and 2-(3-hydroxypicolinomido)acetic acid

3T4H | pdb_00003t4h

Crystal Structure of AlkB in complex with Fe(III) and N-Oxalyl-S-(3-nitrobenzyl)-L-cysteine

3T4V | pdb_00003t4v

Crystal Structure of AlkB in complex with Fe(III) and N-Oxalyl-S-(2-napthalenemethyl)-L-cysteine

4BIO | pdb_00004bio

FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH 8-HYDROXYQUINOLINE-5- CARBOXYLIC ACID

4BIS | pdb_00004bis

JMJD2A COMPLEXED WITH 8-HYDROXYQUINOLINE-4-CARBOXYLIC ACID

4IW3 | pdb_00004iw3

Crystal structure of a Pseudomonas putida prolyl-4-hydroxylase (P4H) in complex with elongation factor Tu (EF-Tu)

4J0Q | pdb_00004j0q

Crystal structure of Pseudomonas putida elongation factor Tu (EF-Tu)

4J25 | pdb_00004j25

Crystal structure of a Pseudomonas putida prolyl-4-hydroxylase (P4H)

4JHT | pdb_00004jht

Crystal Structure of AlkB in complex with 5-carboxy-8-hydroxyquinoline (IOX1)

4NHK | pdb_00004nhk

Crystal structure of Tpa1p from Saccharomyces cerevisiae, termination and polyadenylation protein 1, in complex with pyridine-2,4-dicarboxylic acid (2,4-PDCA)

4NHL | pdb_00004nhl

Crystal structure of Tpa1p from Saccharomyces cerevisiae, termination and polyadenylation protein 1, in complex with N-oxalylglycine (NOG)

4NHM | pdb_00004nhm

Crystal structure of Tpa1p from Saccharomyces cerevisiae, termination and polyadenylation protein 1, in complex with N-[(1-chloro-4-hydroxyisoquinolin-3-yl)carbonyl]glycine (IOX3/UN9)

4NHX | pdb_00004nhx

Crystal structure of human OGFOD1, 2-oxoglutarate and iron-dependent oxygenase domain containing 1, in complex with N-oxalylglycine (NOG)

4NHY | pdb_00004nhy

Crystal structure of human OGFOD1, 2-oxoglutarate and iron-dependent oxygenase domain containing 1, in complex with pyridine-2,4-dicarboxylic acid (2,4-PDCA)

4NJ4 | pdb_00004nj4

Crystal Structure of Human ALKBH5

4O61 | pdb_00004o61

Structure of human ALKBH5 crystallized in the presence of citrate

4OCT | pdb_00004oct

Crystal structure of human ALKBH5 crystallized in the presence of Mn^{2+} and 2-oxoglutarate

4PVO | pdb_00004pvo

Crystal Structure of VIM-2 metallo-beta-lactamase in complex with ML302 and ML302F

4PVT | pdb_00004pvt

Crystal Structure of VIM-2 metallo-beta-lactamase in complex with ML302F

4TYT | pdb_00004tyt

Crystal Structure of BcII metallo-beta-lactamase in complex with ML302F

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3T3Y | pdb_00003t3y

3T4H | pdb_00003t4h

3T4V | pdb_00003t4v

4BIO | pdb_00004bio

4BIS | pdb_00004bis

4IW3 | pdb_00004iw3

4J0Q | pdb_00004j0q

4J25 | pdb_00004j25

4JHT | pdb_00004jht

4NHK | pdb_00004nhk

4NHL | pdb_00004nhl

4NHM | pdb_00004nhm

4NHX | pdb_00004nhx

4NHY | pdb_00004nhy

4NJ4 | pdb_00004nj4

4O61 | pdb_00004o61

4OCT | pdb_00004oct

4PVO | pdb_00004pvo

4PVT | pdb_00004pvt

4TYT | pdb_00004tyt