RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Abdelkareem, M."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 33 Structures.

Refinements

Structure Determination Methodology

experimental (33)

Scientific Name of Source Organism

	Homo sapiens (24)
	Mus musculus (11)
	Staphylococcus aureus (1)

Taxonomy

	Eukaryota (33)
	Bacteria (1)
	Eukaryota (eukaryotes) (1)

Experimental Method

X-RAY DIFFRACTION (33)

Polymer Entity Type

Protein (33)

Refinement Resolution (Å)

	1.5 - 2.0 (11)
	2.0 - 2.5 (6)
	2.5 - 3.0 (14)
	3.0 - 3.5 (1)
	3.5 - 4.0 (1)

Release Date

	1995 - 1999 (2)
	2000 - 2004 (7)
	2005 - 2009 (4)
	2010 - 2014 (3)
	2015 - 2019 (16)
	2020 - 2024 (1)

Symmetry Type

	Asymmetric (22)
	Cyclic (11)

SCOP Classification

	All beta proteins (32)
	Artifacts (4)
	Alpha and beta proteins (a+b) (1)

AllSelected

1 to 25 of 33 Structures

Page 1 of 2

Sort by

Explore in 3D

1B2W \| pdb_00001b2w	Download File View File

COMPARISON OF THE THREE-DIMENSIONAL STRUCTURES OF A HUMANIZED AND A CHIMERIC FAB OF AN ANTI-GAMMA-INTERFERON ANTIBODY

Fan, Z., Shan, L., Goldsteen, B.Z., Guddat, L.W., Thakur, A., Landolfi, N.F., Co, M.S., Vasquez, M., Queen, C., Ramsland, P.A., Edmundson, A.B.

(1999) J Mol Recognit 12: 19-32

Released	1999-05-06
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	PROTEIN (ANTIBODY (HEAVY CHAIN)) (protein) PROTEIN (ANTIBODY (LIGHT CHAIN)) (protein)

Explore in 3D

1B4J \| pdb_00001b4j	Download File View File

COMPARISON OF THE THREE-DIMENSIONAL STRUCTURES OF A HUMANIZED AND A CHIMERIC FAB OF AN ANTI-GAMMA-INTERFERON ANTIBODY

Fan, Z., Shan, L., Goldsteen, B.Z., Guddat, L.W., Thakur, A., Landolfi, N.F., Co, M.S., Vasques, M., Queen, C., Ramsland, P.A., Edmundson, A.B.

(1999) J Mol Recognit 12: 19-32

Released	1999-06-15
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	ANTIBODY (protein)

Explore in 3D

1DQL \| pdb_00001dql	Download File View File

CRYSTAL STRUCTURE OF AN UNLIGANDED (NATIVE) FV FROM A HUMAN IGM ANTI-PEPTIDE ANTIBODY

Ramsland, P.A., Shan, L., Moomaw, C.R., Slaughter, C.A., Guddat, L.W., Edmundson, A.B.

(2000) Mol Immunol 37: 295-310

Released	2000-10-04
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	IGM MEZ IMMUNOGLOBULIN (protein)

Explore in 3D

1ETZ \| pdb_00001etz	Download File View File

THE THREE-DIMENSIONAL STRUCTURE OF AN ANTI-SWEETENER FAB, NC10.14, SHOWS THE EXTENT OF STRUCTURAL DIVERSITY IN ANTIGEN RECOGNITION BY IMMUNOGLOBULINS

Guddat, L.W., Shan, L., Broomell, C., Ramsland, P.A., Fan, Z., Anchin, J.M., Linthicum, D.S., Edmundson, A.B.

(2000) J Mol Biology 302: 853-872

Released	2000-10-18
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Mus musculus
Macromolecule	FAB NC10.14 - HEAVY CHAIN (protein) FAB NC10.14 - LIGHT CHAIN (protein)
Unique Ligands	GAS

Explore in 3D

1JVK \| pdb_00001jvk	Download File View File

THREE-DIMENSIONAL STRUCTURE OF AN IMMUNOGLOBULIN LIGHT CHAIN DIMER ACTING AS A LETHAL AMYLOID PRECURSOR

Bourne, P.C., Ramsland, P.A., Shan, L., Fan, Z.-C., DeWitt, C.R., Shultz, B.B., Terzyan, S.S., Edmundson, A.B.

(2002) Acta Crystallogr D Biol Crystallogr 58: 815-823

Released	2002-05-03
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Homo sapiens
Macromolecule	IMMUNOGLOBULIN LAMBDA LIGHT CHAIN (protein)

Explore in 3D

1LGV \| pdb_00001lgv	Download File View File

Structure of a Human Bence-Jones Dimer Crystallized in U.S. Space Shuttle Mission STS-95: 100K

Terzyan, S.S., DeWitt, C.R., Ramsland, P.A., Bourne, P.C., Edmundson, A.B.

(2003) J Mol Recognit 16: 83-90

Released	2003-07-01
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	IMMUNOGLOBULIN LAMBDA LIGHT CHAIN (protein)

Explore in 3D

1LHZ \| pdb_00001lhz	Download File View File

Structure of a Human Bence-Jones Dimer Crystallized in U.S. Space Shuttle Mission STS-95: 293K

Terzyan, S.S., DeWitt, C.R., Ramsland, P.A., Bourne, P.C., Edmundson, A.B.

(2003) J Mol Recognit 16: 83-90

Released	2003-07-01
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	IMMUNOGLOBULIN LAMBDA LIGHT CHAIN (protein)

Explore in 3D

1S3K \| pdb_00001s3k	Download File View File

Crystal Structure of a Humanized Fab (hu3S193) in Complex with the Lewis Y Tetrasaccharide

Ramsland, P.A., Farrugia, W., Bradford, T.M., Hogarth, P.M., Scott, A.M.

(2004) J Mol Biology 340: 809-818

Released	2004-07-13
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mus musculus
Macromolecule	HU3S193 Fab fragment, heavy chain (protein) HU3S193 Fab fragment, light chain (protein)
Unique Ligands	GOL
Unique branched monosaccharides	FUC, GAL, NDG

Explore in 3D

1T66 \| pdb_00001t66	Download File View File

The structure of FAB with intermediate affinity for fluorescein.

Terzyan, S., Ramsland, P.A., Voss Jr., E.W., Herron, J.N., Edmundson, A.B.

(2004) J Mol Biology 339: 1141-1151

Released	2004-05-18
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Mus musculus
Macromolecule	immunoglobulin heavy chain (protein) immunoglobulin light chain (protein)
Unique Ligands	FLU

Explore in 3D

2AGJ \| pdb_00002agj	Download File View File

Crystal Structure of a glycosylated Fab from an IgM cryoglobulin with properties of a natural proteolytic antibody

Ramsland, P.A., Terzyan, S.S., Cloud, G., Bourne, C.R., Farrugia, W., Tribbick, G., Geysen, H.M., Moomaw, C.R., Slaughter, C.A., Edmundson, A.B.

(2006) Biochem J 395: 473-481

Released	2006-05-02
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Yvo Fab, Heavy Chain (protein) Yvo Fab, Light Chain (protein)
Unique branched monosaccharides	NAG

Explore in 3D

2FO4 \| pdb_00002fo4	Download File View File

Enhanced MHC class I binding and immune responses through anchor modification of the non-canonical tumor associated MUC1-8 peptide

Lazoura, E., Ramsland, P.A.

(2006) Immunology 119: 306-316

Released	2006-11-14
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	8-mer from Mucin-1 (protein) Beta-2-microglobulin (protein) H-2 class I histocompatibility antigen, K-B alpha chain (protein)
Unique Ligands	MPD, NAG, PO4
Unique branched monosaccharides	FUC, NAG

Explore in 3D

2QEJ \| pdb_00002qej	Download File View File

Crystal structure of a Staphylococcus aureus protein (SSL7) in complex with Fc of human IgA1

Ramsland, P.A., Willoughby, N., Trist, H.M., Farrugia, W., Hogarth, P.M., Fraser, J.D., Wines, B.D.

(2007) Proc Natl Acad Sci U S A 104: 15051-15056

Released	2007-09-18
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens Staphylococcus aureus
Macromolecule	IG ALPHA-1 C REGION (protein) SUPERANTIGEN-LIKE MOLECULE 7 (protein)
Unique Ligands	CA, GOL
Unique branched monosaccharides	NAG

Explore in 3D

3EYV \| pdb_00003eyv	Download File View File

Anti-Lewis Y Fab fragment with Lewis Y antigen in the presence of zinc ions

Farrugia, W., Scott, A.M., Ramsland, P.A.

(2009) PLoS One 4: e7777-e7777

Released	2009-11-03
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mus musculus
Macromolecule	hu3S193 Fab, heavy chain (protein) hu3S193 Fab, light chain (protein)
Unique Ligands	GOL, ZN
Unique branched monosaccharides	FUC, GAL, NDG

Explore in 3D

3RY4 \| pdb_00003ry4	Download File View File

1.5 Angstrom resolution structure of glycosylated fcgammariia (low-responder polymorphism)

Ramsland, P.A., Farrugia, W., Hogarth, P.M.

(2011) J Immunol 187: 3208-3217

Released	2011-08-31
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	Low affinity immunoglobulin gamma Fc region receptor II-a (protein)
Unique Ligands	GOL, NAG

Explore in 3D

3RY5 \| pdb_00003ry5	Download File View File

Three-dimensional structure of glycosylated fcgammariia (high-responder polymorphism)

Ramsland, P.A., Farrugia, W., Hogarth, P.M.

(2011) J Immunol 187: 3208-3217

Released	2011-08-31
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	LOW AFFINITY IMMUNOGLOBULIN GAMMA FC REGION RECEPTOR II-A (protein)

Explore in 3D

3RY6 \| pdb_00003ry6	Download File View File

Complex of fcgammariia (CD32) and the FC of human IGG1

Ramsland, P.A., Farrugia, W., Scott, A.M., Hogarth, P.M.

(2011) J Immunol 187: 3208-3217

Released	2011-08-31
Method	X-RAY DIFFRACTION 3.8 Å
Organisms	Homo sapiens
Macromolecule	Ig gamma-1 chain C region (protein) Low affinity immunoglobulin gamma Fc region receptor II-a (protein)
Unique Ligands	GOL, NAG
Unique branched monosaccharides	BMA, FUL, GAL, MAN, NAG, NDG, SIA

Explore in 3D

4WI2 \| pdb_00004wi2	Download File View File

Structural mapping of the human IgG1 binding site for FcRn: hu3S193 Fc (wild-type)

Farrugia, W., Burvenich, I.J.G., Scott, A.M., Ramsland, P.A.

To be published

Released	2015-09-30
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Ig gamma-1 chain C region (protein)
Unique Ligands	EDO
Unique branched monosaccharides	BMA, FUC, MAN, NAG

Explore in 3D

4WI3 \| pdb_00004wi3	Download File View File

Structural mapping of the human IgG1 binding site for FcRn: hu3S193 Fc mutation I253A

Farrugia, W., Burvenich, I.J.G., Scott, A.M., Ramsland, P.A.

To be published

Released	2015-09-30
Method	X-RAY DIFFRACTION 2.703 Å
Organisms	Homo sapiens
Macromolecule	Ig gamma-1 chain C region (protein)
Unique branched monosaccharides	BMA, FUC, MAN, NAG

Explore in 3D

4WI4 \| pdb_00004wi4	Download File View File

Structural mapping of the human IgG1 binding site for FcRn: hu3S193 Fc mutation S254A

Farrugia, W., Burvenich, I.J.G., Scott, A.M., Ramsland, P.A.

To be published

Released	2015-09-30
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Ig gamma-1 chain C region (protein)
Unique Ligands	EDO
Unique branched monosaccharides	BMA, FUC, MAN, NAG

Explore in 3D

4WI5 \| pdb_00004wi5	Download File View File

Structural mapping of the human IgG1 binding site for FcRn: hu3S193 Fc mutation H310A

Farrugia, W., Burvenich, I.J.G., Scott, A.M., Ramsland, P.A.

To be published

Released	2015-09-30
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Ig gamma-1 chain C region (protein)
Unique Ligands	EDO
Unique branched monosaccharides	BMA, FUC, MAN, NAG

Explore in 3D

4WI6 \| pdb_00004wi6	Download File View File

Structural mapping of the human IgG1 binding site for FcRn: hu3S193 Fc mutation N434A

Farrugia, W., Burvenich, I.J.G., Scott, A.M., Ramsland, P.A.

To be published

Released	2015-09-30
Method	X-RAY DIFFRACTION 2.201 Å
Organisms	Homo sapiens
Macromolecule	Ig gamma-1 chain C region (protein)
Unique Ligands	EDO
Unique branched monosaccharides	BMA, FUC, MAN, NAG

Explore in 3D

4WI7 \| pdb_00004wi7	Download File View File

Structural mapping of the human IgG1 binding site for FcRn: hu3S193 Fc mutation H435A

Farrugia, W., Burvenich, I.J.G., Scott, A.M., Ramsland, P.A.

To be published

Released	2015-09-30
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Ig gamma-1 chain C region (protein)
Unique Ligands	EDO
Unique branched monosaccharides	BMA, FUC, MAN, NAG

Explore in 3D

4WI8 \| pdb_00004wi8	Download File View File

Structural mapping of the human IgG1 binding site for FcRn: hu3S193 Fc mutation Y436A

Farrugia, W., Burvenich, I.J.G., Scott, A.M., Ramsland, P.A.

To be published

Released	2015-09-30
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Ig gamma-1 chain C region (protein)
Unique branched monosaccharides	BMA, FUC, MAN, NAG

Explore in 3D

4WI9 \| pdb_00004wi9	Download File View File

Structural mapping of the human IgG1 binding site for FcRn: hu3S193 Fc mutation I253A/H310A

Farrugia, W., Burvenich, I.J.G., Scott, A.M., Ramsland, P.A.

To be published

Released	2015-09-30
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Homo sapiens
Macromolecule	Ig gamma-1 chain C region (protein)
Unique branched monosaccharides	BMA, FUC, MAN, NAG