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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Wauer, T."

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Search Summary

This query matches 12 Structures.

Refinements

Structure Determination Methodology

experimental (12)

Scientific Name of Source Organism

	Homo sapiens (12)
	Pediculus humanus corporis (1)

Taxonomy

Eukaryota (12)

Experimental Method

X-RAY DIFFRACTION (12)

Polymer Entity Type

Protein (12)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (3)
	2.0 - 2.5 (4)
	2.5 - 3.0 (1)
	3.0 - 3.5 (1)

Release Date

	2010 - 2014 (9)
	2015 - 2019 (3)

Enzyme Classification Name

	Hydrolases (8)
	Ligases (3)
	Transferases (3)

Symmetry Type

	Asymmetric (8)
	Cyclic (2)
	Dihedral (2)

SCOP Classification

Alpha and beta proteins (a+b) (5)

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1 to 12 of 12 Structures

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3ZNV \| pdb_00003znv	Download File View File

Crystal structure of the OTU domain of OTULIN at 1.3 Angstroms.

Keusekotten, K., Elliott, P.R., Glockner, L., Kulathu, Y., Wauer, T., Krappmann, D., Hofmann, K., Komander, D.

(2013) Cell 153: 1312

Released	2013-06-26
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN FAM105B (protein)
Unique Ligands	CA, CL, GOL

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3ZNX \| pdb_00003znx	Download File View File

Crystal structure of the OTU domain of OTULIN D336A mutant

Keusekotten, K., Elliott, P.R., Glockner, L., Kulathu, Y., Wauer, T., Krappmann, D., Hofmann, K., Komander, D.

(2013) Cell 153: 1312

Released	2013-06-26
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN FAM105B (protein)
Unique Ligands	CA, CL, GOL

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3ZNZ \| pdb_00003znz	Download File View File

Crystal structure of OTULIN OTU domain (C129A) in complex with Met1- di ubiquitin

Keusekotten, K., Elliott, P.R., Glockner, L., Kulathu, Y., Wauer, T., Krappmann, D., Hofmann, K., Komander, D.

(2013) Cell 153: 1312

Released	2013-06-26
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	POLYUBIQUITIN-C (protein) PROTEIN FAM105B (protein)
Unique Ligands	SO4

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4BM9 \| pdb_00004bm9	Download File View File

Structure of the autoinhibited Parkin catalytic domain

Wauer, T., Komander, D.

(2013) EMBO J 32: 2099

Released	2013-06-12
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens
Macromolecule	E3 UBIQUITIN-PROTEIN LIGASE PARKIN (protein)
Unique Ligands	GOL, SO4, ZN

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4BOP \| pdb_00004bop	Download File View File

Structure of OTUD1 OTU domain

Mevissen, T.E.T., Hospenthal, M.K., Geurink, P.P., Elliott, P.R., Akutsu, M., Arnaudo, N., Ekkebus, R., Kulathu, Y., Wauer, T., El Oualid, F., Freund, S.M.V., Ovaa, H., Komander, D.

(2013) Cell 154: 169

Released	2013-07-17
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	OTU DOMAIN-CONTAINING PROTEIN 1 (protein)
Unique Ligands	PO4

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4BOQ \| pdb_00004boq	Download File View File

Structure of OTUD2 OTU domain

Mevissen, T.E.T., Hospenthal, M.K., Geurink, P.P., Elliott, P.R., Akutsu, M., Arnaudo, N., Ekkebus, R., Kulathu, Y., Wauer, T., El Oualid, F., Freund, S.M.V., Ovaa, H., Komander, D.

(2013) Cell 154: 169

Released	2013-07-17
Method	X-RAY DIFFRACTION 1.47 Å
Organisms	Homo sapiens
Macromolecule	UBIQUITIN THIOESTERASE OTU1 (protein)
Unique Ligands	GOL

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4BOS \| pdb_00004bos	Download File View File

Structure of OTUD2 OTU domain in complex with Ubiquitin K11-linked peptide

Mevissen, T.E.T., Hospenthal, M.K., Geurink, P.P., Elliott, P.R., Akutsu, M., Arnaudo, N., Ekkebus, R., Kulathu, Y., Wauer, T., El Oualid, F., Freund, S.M.V., Ovaa, H., Komander, D.

(2013) Cell 154: 169

Released	2013-07-24
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens
Macromolecule	OTUD2 (protein) POLYUBIQUITIN-C (protein) UBIQUITIN THIOESTERASE OTU1 (protein)
Unique Ligands	MG, NO3

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4BOU \| pdb_00004bou	Download File View File

Structure of OTUD3 OTU domain

Mevissen, T.E.T., Hospenthal, M.K., Geurink, P.P., Elliott, P.R., Akutsu, M., Arnaudo, N., Ekkebus, R., Kulathu, Y., Wauer, T., El Oualid, F., Freund, S.M.V., Ovaa, H., Komander, D.

(2013) Cell 154: 169

Released	2013-07-17
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Homo sapiens
Macromolecule	OTU DOMAIN-CONTAINING PROTEIN 3 (protein)

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4BOZ \| pdb_00004boz	Download File View File

Structure of OTUD2 OTU domain in complex with K11-linked di ubiquitin

Mevissen, T.E.T., Hospenthal, M.K., Geurink, P.P., Elliott, P.R., Akutsu, M., Arnaudo, N., Ekkebus, R., Kulathu, Y., Wauer, T., El Oualid, F., Freund, S.M.V., Ovaa, H., Komander, D.

(2013) Cell 154: 169

Released	2013-07-17
Method	X-RAY DIFFRACTION 3.03 Å
Organisms	Homo sapiens
Macromolecule	UBIQUITIN THIOESTERASE OTU1 (protein) UBIQUITIN-C (protein)
Unique Ligands	GOL

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4WZP \| pdb_00004wzp	Download File View File

Ser65 phosphorylated ubiquitin, major conformation

Wauer, T., Wagstaff, J., Freund, S.M.V., Komander, D.

(2015) EMBO J 34: 307-325

Released	2015-01-14
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	ubiquitin (protein)
Unique Ligands	SO4

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5C9V \| pdb_00005c9v	Download File View File

Structure of human Parkin G319A

Wauer, T., Komander, D.

(2015) Nature 524: 370-374

Released	2015-07-22
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase parkin (protein)
Unique Ligands	GOL, SO4, ZN

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5CAW \| pdb_00005caw	Download File View File

Structure of Pediculus humanus Parkin bound to phospho-ubiquitin

Wauer, T., Komander, D.

(2015) Nature 524: 370-374

Released	2015-07-22
Method	X-RAY DIFFRACTION 2.62 Å
Organisms	Homo sapiens Pediculus humanus corporis
Macromolecule	E3 ubiquitin-protein ligase parkin (protein) Polyubiquitin-B (protein)
Unique Ligands	SO4, ZN

1 to 12 of 12 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

3ZNV | pdb_00003znv

Crystal structure of the OTU domain of OTULIN at 1.3 Angstroms.

3ZNX | pdb_00003znx

Crystal structure of the OTU domain of OTULIN D336A mutant

3ZNZ | pdb_00003znz

Crystal structure of OTULIN OTU domain (C129A) in complex with Met1- di ubiquitin

4BM9 | pdb_00004bm9

Structure of the autoinhibited Parkin catalytic domain

4BOP | pdb_00004bop

Structure of OTUD1 OTU domain

4BOQ | pdb_00004boq

Structure of OTUD2 OTU domain

4BOS | pdb_00004bos

Structure of OTUD2 OTU domain in complex with Ubiquitin K11-linked peptide

4BOU | pdb_00004bou

Structure of OTUD3 OTU domain

4BOZ | pdb_00004boz

Structure of OTUD2 OTU domain in complex with K11-linked di ubiquitin

4WZP | pdb_00004wzp

Ser65 phosphorylated ubiquitin, major conformation

5C9V | pdb_00005c9v

Structure of human Parkin G319A

5CAW | pdb_00005caw

Structure of Pediculus humanus Parkin bound to phospho-ubiquitin

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3ZNV | pdb_00003znv

3ZNX | pdb_00003znx

3ZNZ | pdb_00003znz

4BM9 | pdb_00004bm9

4BOP | pdb_00004bop

4BOQ | pdb_00004boq

4BOS | pdb_00004bos

4BOU | pdb_00004bou

4BOZ | pdb_00004boz

4WZP | pdb_00004wzp

5C9V | pdb_00005c9v

5CAW | pdb_00005caw