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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Tsai, M.-D."

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Search Summary

This query matches 91 Structures.

Refinements

Structure Determination Methodology

experimental (91)

Scientific Name of Source Organism

	Methanosarcina mazei Go1 (41)
	synthetic construct (18)
	Saccharomyces cerevisiae (16)
	African swine fever virus (12)
	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (10)
	Homo sapiens (7)
	Synechococcus elongatus PCC 7942 = FACHB-805 (4)
	Bos taurus (3)
	Bifidobacterium longum subsp. longum F8 (2)
	Rattus norvegicus (2)

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Taxonomy

	Archaea (42)
	Eukaryota (29)
	other sequences (18)
	Varidnaviria (12)
	Eukaryota (eukaryotes) (10)
	Bacteria (9)
	Duplodnaviria (2)
	Riboviria (2)

Experimental Method

	X-RAY DIFFRACTION (52)
	SOLUTION NMR (22)
	ELECTRON MICROSCOPY (17)

Polymer Entity Type

	Protein (91)
	DNA (23)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (1)
	1.5 - 2.0 (7)
	2.0 - 2.5 (33)
	2.5 - 3.0 (20)
	3.0 - 3.5 (7)

Release Date

	1995 - 1999 (7)
	2000 - 2004 (18)
	2005 - 2009 (2)
	2010 - 2014 (1)
	2015 - 2019 (1)
	2020 - 2024 (62)

Enzyme Classification Name

	Lyases (49)
	Transferases (19)
	Isomerases (11)
	Hydrolases (3)
	Oxidoreductases (1)

Membrane Protein Annotation

OPM (1)

Symmetry Type

	Asymmetric (72)
	Cyclic (16)
	Dihedral (3)

SCOP Classification

	All beta proteins (16)
	All alpha proteins (6)
	Alpha and beta proteins (a+b) (7)
	Alpha and beta proteins (a/b) (2)

AllSelected

1 to 25 of 91 Structures

Page 1 of 4

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1A5E \| pdb_00001a5e	Download File View File

SOLUTION NMR STRUCTURE OF TUMOR SUPPRESSOR P16INK4A, 18 STRUCTURES

Byeon, I.-J.L., Li, J., Ericson, K., Selby, T.L., Tevelev, A., Kim, H.-J., O'Maille, P., Tsai, M.-D.

(1998) Mol Cell 1: 421-431

Released	1999-08-13
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	TUMOR SUPPRESSOR P16INK4A (protein)

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1BU9 \| pdb_00001bu9	Download File View File

SOLUTION STRUCTURE OF P18-INK4C, 21 STRUCTURES

Byeon, I.-J.L., Li, J., Tsai, M.-D.

(1999) Biochemistry 38: 2930-2940

Released	1999-09-13
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	PROTEIN (CYCLIN-DEPENDENT KINASE 6 INHIBITOR) (protein)

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1BVM \| pdb_00001bvm	Download File View File

SOLUTION NMR STRUCTURE OF BOVINE PANCREATIC PHOSPHOLIPASE A2, 20 STRUCTURES

Yuan, C.-H., Byeon, I.-J.L., Li, Y., Tsai, M.-D.

(1999) Biochemistry 38: 2909-2918

Released	1999-09-16
Method	SOLUTION NMR
Organisms	Bos taurus
Macromolecule	PROTEIN (PHOSPHOLIPASE A2) (protein)

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1CEH \| pdb_00001ceh	Download File View File

STRUCTURE AND FUNCTION OF THE CATALYTIC SITE MUTANT ASP99ASN OF PHOSPHOLIPASE A2: ABSENCE OF CONSERVED STRUCTURAL WATER

Kumar, A., Sekharudu, C., Ramakrishnan, B., Dupureur, C.M., Zhu, H., Tsai, M.-D., Sundaralingam, M.

(1994) Protein Sci 3: 2082-2088

Released	1995-02-07
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bos taurus
Macromolecule	PHOSPHOLIPASE A2 (protein)
Unique Ligands	CA

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1DC2 \| pdb_00001dc2	Download File View File

SOLUTION NMR STRUCTURE OF TUMOR SUPPRESSOR P16INK4A, 20 STRUCTURES

Byeon, I.-J.L., Li, J., Yuan, C., Tsai, M.-D.

(2000) Protein Sci 9: 1120-1128

Released	1999-12-23
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	CYCLIN-DEPENDENT KINASE 4 INHIBITOR A (P16INK4A) (protein)

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1DMZ \| pdb_00001dmz	Download File View File

A REFINED NMR STRUCTURE OF A NEW PHOPHOPEPTIDE-BINDING DOMAIN CONTAINING THE FHA2 OF RAD53

Byeon, I.-J.L., Liao, H., Tsai, M.-D.

(1999) J Mol Biology 294: 1041-1049

Released	2000-01-06
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	PROTEIN (PROTEIN KINASE SPK1) (protein)

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1FHQ \| pdb_00001fhq	Download File View File

REFINED SOLUTION STRUCTURE OF THE FHA2 DOMAIN OF RAD53

Byeon, I.-J.L., Liao, H., Tsai, M.-D.

(2000) J Mol Biology 302: 927-940

Released	2000-10-18
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	PROTEIN KINASE SPK1 (protein)

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1FHR \| pdb_00001fhr	Download File View File

SOLUTION STRUCTURE OF THE FHA2 DOMAIN OF RAD53 COMPLEXED WITH A PHOSPHOTYROSYL PEPTIDE

Byeon, I.-J.L., Liao, H., Yongkiettrakul, S., Tsai, M.-D.

(2000) J Mol Biology 302: 927-940

Released	2000-10-18
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Macromolecule	DNA REPAIR PROTEIN RAD9 (protein) PROTEIN KINASE SPK1 (protein)

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1G3G \| pdb_00001g3g	Download File View File

NMR STRUCTURE OF THE FHA1 DOMAIN OF YEAST RAD53

Yuan, C., Liao, H., Su, M., Yongkiettrakul, S., Byeon, I.-J.L., Tsai, M.-D.

(2000) J Mol Biology 304: 941-951

Released	2001-01-10
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	PROTEIN KINASE SPK1 (protein)

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1HUO \| pdb_00001huo	Download File View File

CRYSTAL STRUCTURE OF DNA POLYMERASE BETA COMPLEXED WITH DNA AND CR-TMPPCP

Arndt, J.W., Gong, W., Zhong, X., Showalter, A.K., Liu, J., Lin, Z., Paxson, C., Tsai, M.-D., Chan, M.K.

(2001) Biochemistry 40: 5368-5375

Released	2001-04-23
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Rattus norvegicus
Macromolecule	DNA POLYMERASE BETA (protein) 5'-D(APAPTPAPGPGPCPGPTPCPG)-3' (nucleic acid) 5'-D(PCPGPAPCPGPCPC)-3' (nucleic acid)
Unique Ligands	CR, TTE

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1HUZ \| pdb_00001huz	Download File View File

CRYSTAL STRUCTURE OF DNA POLYMERASE COMPLEXED WITH DNA AND CR-PCP

Arndt, J.W., Gong, W., Zhong, X., Showalter, A.K., Liu, J., Lin, Z., Paxson, C., Tsai, M.-D., Chan, M.K.

(2001) Biochemistry 40: 5368-5375

Released	2001-04-23
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Rattus norvegicus
Macromolecule	DNA POLYMERASE BETA (protein) 5'-D(APAPTPAPGPGPCPGPTPCPG)-3' (nucleic acid) 5'-D(PCPGPAPCPGPCPCP*T)-3' (nucleic acid)
Unique Ligands	CR, MDN

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1J4K \| pdb_00001j4k	Download File View File

SOLUTION STRUCTURE OF THE FHA2 DOMAIN OF RAD53 COMPLEXED WITH A PHOSPHOTYROSYL PEPTIDE DERIVED FROM RAD9

Byeon, I.-J.L., Yongkiettrakul, S., Tsai, M.-D.

(2001) J Mol Biology 314: 577-588

Released	2001-12-05
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Macromolecule	DNA REPAIR PROTEIN RAD9 (protein) PROTEIN KINASE SPK1 (protein)

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1J4L \| pdb_00001j4l	Download File View File

SOLUTION STRUCTURE OF THE FHA2 DOMAIN OF RAD53 COMPLEXED WITH A PHOSPHOTHREONYL PEPTIDE DERIVED FROM RAD9

Byeon, I.-J.L., Yongkiettrakul, S., Tsai, M.-D.

(2001) J Mol Biology 314: 577-588

Released	2001-12-05
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Macromolecule	DNA REPAIR PROTEIN RAD9 (protein) PROTEIN KINASE SPK1 (protein)

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1J4O \| pdb_00001j4o	Download File View File

REFINED NMR STRUCTURE OF THE FHA1 DOMAIN OF YEAST RAD53

Yuan, C., Yongkiettrakul, S., Byeon, I.-J.L., Zhou, S., Tsai, M.-D.

(2001) J Mol Biology 314: 563-575

Released	2001-12-05
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	PROTEIN KINASE SPK1 (protein)

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1J4P \| pdb_00001j4p	Download File View File

NMR STRUCTURE OF THE FHA1 DOMAIN OF RAD53 IN COMPLEX WITH A RAD9-DERIVED PHOSPHOTHREONINE (AT T155) PEPTIDE

Yuan, C., Yongkiettrakul, S., Byeon, I.-J.L., Zhou, S., Tsai, M.-D.

(2001) J Mol Biology 314: 563-575

Released	2001-12-05
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Macromolecule	DNA REPAIR PROTEIN RAD9 (protein) PROTEIN KINASE SPK1 (protein)

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1J4Q \| pdb_00001j4q	Download File View File

NMR STRUCTURE OF THE FHA1 DOMAIN OF RAD53 IN COMPLEX WITH A RAD9-DERIVED PHOSPHOTHREONINE (AT T192) PEPTIDE

Yuan, C., Yongkiettrakul, S., Byeon, I.-J.L., Zhou, S., Tsai, M.-D.

(2001) J Mol Biology 314: 563-575

Released	2001-12-05
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Macromolecule	DNA REPAIR PROTEIN RAD9 (protein) PROTEIN KINASE SPK1 (protein)

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1JQR \| pdb_00001jqr	Download File View File

NMR structure of the African swine fever virus DNA polymerase X

Byeon, I.-J.L., Su, M.-I., Showalter, A.K., Tsai, M.-D.

(2001) Nat Struct Biol 8: 942-946

Released	2001-10-26
Method	SOLUTION NMR
Organisms	African swine fever virus
Macromolecule	DNA POLYMERASE BETA-LIKE (protein)

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1K2M \| pdb_00001k2m	Download File View File

Solution Structure of the FHA2 Domain of Rad53 Complexed with a Phosphotyrosyl Peptide Derived from Rad9

Byeon, I.-J.L., Yongkiettrakul, S., Tsai, M.-D.

(2001) J Mol Biology 314: 577-588

Released	2001-12-05
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Macromolecule	DNA repair protein Rad9 (protein) Protein Kinase SPK1 (protein)

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1K2N \| pdb_00001k2n	Download File View File

Solution Structure of the FHA2 domain of Rad53 Complexed with a Phosphothreonyl Peptide Derived from Rad9

Byeon, I.-J.L., Yongkiettrakul, S., Tsai, M.-D.

(2001) J Mol Biology 314: 577-588

Released	2001-12-05
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Macromolecule	DNA repair protein Rad9 (protein) Protein Kinase SPK1 (protein)

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1K3J \| pdb_00001k3j	Download File View File

Refined NMR Structure of the FHA1 Domain of Yeast Rad53

Yuan, C., Yongkiettrakul, S., Byeon, I.-J.L., Zhou, S., Tsai, M.-D.

(2001) J Mol Biology 314: 563-575

Released	2001-12-05
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	Protein Kinase SPK1 (protein)

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1K3N \| pdb_00001k3n	Download File View File

NMR Structure of the FHA1 Domain of Rad53 in Complex with a Rad9-derived Phosphothreonine (at T155) Peptide

Yuan, C., Yongkiettrakul, S., Byeon, I.-J.L., Zhou, S., Tsai, M.-D.

(2001) J Mol Biology 314: 563-575

Released	2001-12-05
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Macromolecule	DNA repair protein Rad9 (protein) Protein Kinase SPK1 (protein)

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1K3Q \| pdb_00001k3q	Download File View File

NMR structure of the FHA1 Domain of Rad53 in Complex with a Rad9-derived Phosphothreonine (at T192) Peptide

Yuan, C., Yongkiettrakul, S., Byeon, I.-J.L., Zhou, S., Tsai, M.-D.

(2001) J Mol Biology 314: 563-575

Released	2001-12-05
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Macromolecule	DNA repair protein Rad9 (protein) Protein Kinase SPK1 (protein)

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1QU5 \| pdb_00001qu5	Download File View File

NMR STRUCTURE OF A NEW PHOSPHOTYROSINE BINDING DOMAIN CONTAINING THE FHA2 DOMAIN OF RAD 53

Byeon, I.-J.L., Liao, H., Tsai, M.-D.

(1999) J Mol Biology 294: 1041-1049

Released	1999-12-17
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	PROTEIN KINASE SPK1 (protein)

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1T6M \| pdb_00001t6m	Download File View File

X-ray Structure of the R70D PI-PLC enzyme: Insight into the role of calcium and surrounding amino acids on active site geometry and catalysis.

Apiyo, D., Zhao, L., Tsai, M.-D., Selby, T.L.

(2005) Biochemistry 44: 9980-9989

Released	2005-08-16
Method	X-RAY DIFFRACTION 2.107 Å
Organisms	Bacillus thuringiensis
Macromolecule	1-phosphatidylinositol phosphodiesterase (protein)
Unique Ligands	CA