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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Timm, D.E."

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Search Summary

This query matches 17 Structures.

Refinements

Structure Determination Methodology

experimental (17)

Scientific Name of Source Organism

	Gloeobacter violaceus PCC 7421 (8)
	Homo sapiens (5)
	Oryctolagus cuniculus (2)
	Rattus norvegicus (2)

Taxonomy

	Eukaryota (9)
	Bacteria (8)

Experimental Method

X-RAY DIFFRACTION (17)

Polymer Entity Type

Protein (17)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (2)
	2.0 - 2.5 (2)
	2.5 - 3.0 (1)
	3.0 - 3.5 (3)
	3.5 - 4.0 (6)

Release Date

	2010 - 2014 (10)
	2015 - 2019 (4)
	2020 - 2024 (3)

Enzyme Classification Name

	Lyases (4)
	Translocases (2)
	Transferases (1)

Membrane Protein Annotation

	PDBTM (10)
	MemProtMD (9)
	mpstruc (8)

Symmetry Type

	Cyclic (10)
	Asymmetric (7)

SCOP Classification

	Alpha and beta proteins (a/b) (2)
	All beta proteins (4)
	Alpha and beta proteins (a+b) (1)

AllSelected

1 to 17 of 17 Structures

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2XQ3 \| pdb_00002xq3	Download File View File

Pentameric ligand gated ion channel GLIC in complex with Br-lidocaine

Hilf, R.J.C., Bertozzi, C., Zimmermann, I., Reiter, A., Trauner, D., Dutzler, R.

(2010) Nat Struct Mol Biol 17: 1330

Released	2010-11-10
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Gloeobacter violaceus PCC 7421
Macromolecule	GLR4197 PROTEIN (protein)
Unique Ligands	BR

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2XQ4 \| pdb_00002xq4	Download File View File

Pentameric ligand gated ion channel GLIC in complex with tetramethylarsonium (TMAs)

Hilf, R.J.C., Bertozzi, C., Zimmermann, I., Reiter, A., Trauner, D., Dutzler, R.

(2010) Nat Struct Mol Biol 17: 1330

Released	2010-11-10
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Gloeobacter violaceus PCC 7421
Macromolecule	GLR4197 PROTEIN (protein)
Unique Ligands	ARS

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2XQ5 \| pdb_00002xq5	Download File View File

Pentameric ligand gated ion channel GLIC in complex with tetraethylarsonium (TEAs)

Hilf, R.J.C., Bertozzi, C., Zimmermann, I., Reiter, A., Trauner, D., Dutzler, R.

(2010) Nat Struct Mol Biol 17: 1330

Released	2010-11-10
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Gloeobacter violaceus PCC 7421
Macromolecule	GLR4197 PROTEIN (protein)
Unique Ligands	ARS

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2XQ6 \| pdb_00002xq6	Download File View File

Pentameric ligand gated ion channel GLIC in complex with cesium ion (Cs+)

Hilf, R.J.C., Bertozzi, C., Zimmermann, I., Reiter, A., Trauner, D., Dutzler, R.

(2010) Nat Struct Mol Biol 17: 1330

Released	2010-11-10
Method	X-RAY DIFFRACTION 3.7 Å
Organisms	Gloeobacter violaceus PCC 7421
Macromolecule	GLR4197 PROTEIN (protein)
Unique Ligands	CS

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2XQ7 \| pdb_00002xq7	Download File View File

Pentameric ligand gated ion channel GLIC in complex with cadmium ion (Cd2+)

Hilf, R.J.C., Bertozzi, C., Zimmermann, I., Reiter, A., Trauner, D., Dutzler, R.

(2010) Nat Struct Mol Biol 17: 1330

Released	2010-11-10
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Gloeobacter violaceus PCC 7421
Macromolecule	GLR4197 PROTEIN (protein)
Unique Ligands	CD

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2XQ8 \| pdb_00002xq8	Download File View File

Pentameric ligand gated ion channel GLIC in complex with zinc ion (Zn2+)

Hilf, R.J.C., Bertozzi, C., Zimmermann, I., Reiter, A., Trauner, D., Dutzler, R.

(2010) Nat Struct Mol Biol 17: 1330

Released	2010-11-10
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Gloeobacter violaceus PCC 7421
Macromolecule	GLR4197 PROTEIN (protein)
Unique Ligands	ZN

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2XQ9 \| pdb_00002xq9	Download File View File

Pentameric ligand gated ion channel GLIC mutant E221A in complex with tetraethylarsonium (TEAs)

Hilf, R.J.C., Bertozzi, C., Zimmermann, I., Reiter, A., Trauner, D., Dutzler, R.

(2010) Nat Struct Mol Biol 17: 1330

Released	2010-11-10
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Gloeobacter violaceus PCC 7421
Macromolecule	GLR4197 PROTEIN (protein)
Unique Ligands	ARS

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2XQA \| pdb_00002xqa	Download File View File

Pentameric ligand gated ion channel GLIC in complex with tetrabutylantimony (TBSb)

Hilf, R.J.C., Bertozzi, C., Zimmermann, I., Reiter, A., Trauner, D., Dutzler, R.

(2010) Nat Struct Mol Biol 17: 1330

Released	2010-11-10
Method	X-RAY DIFFRACTION 3.7 Å
Organisms	Gloeobacter violaceus PCC 7421
Macromolecule	GLR4197 PROTEIN (protein)
Unique Ligands	SB

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4H8I \| pdb_00004h8i	Download File View File

Structure of GluK2-LBD in complex with GluAzo

Reiter, A., Skerra, A., Trauner, D., Schiefner, A.

(2013) Biochemistry 52: 8972-8974

Released	2013-09-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Rattus norvegicus
Macromolecule	Glutamate receptor, ionotropic kainate 2 (protein)
Unique Ligands	11W, CL, MES, SO4

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4H8J \| pdb_00004h8j	Download File View File

Structure of GluA2-LBD in complex with MES

Reiter, A., Skerra, A., Trauner, D., Schiefner, A.

To be published

Released	2013-09-25
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Rattus norvegicus
Macromolecule	Glutamate receptor 2 (protein)
Unique Ligands	EDO, MES, SO4

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5T71 \| pdb_00005t71	Download File View File

Human carboanhydrase F131C_C206S double mutant in complex with SA-2

DuBay, K.H., Iwan, K., Osorio-Planes, L., Geissler, P., Groll, M., Trauner, D., Broichhagen, J.

(2018) ACS Chem Biol 13: 793-800

Released	2017-09-06
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Homo sapiens
Macromolecule	Carbonic anhydrase 2 (protein)
Unique Ligands	75W, HGB, TRS, ZN

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5T72 \| pdb_00005t72	Download File View File

Human carboanhydrase F131C_C206S double mutant in complex with 2

DuBay, K.H., Iwan, K., Osorio-Planes, L., Geissler, P., Groll, M., Trauner, D., Broichhagen, J.

(2018) ACS Chem Biol 13: 793-800

Released	2017-09-06
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Homo sapiens
Macromolecule	Carbonic anhydrase 2 (protein)
Unique Ligands	4WA, HGB, TRS, ZN

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5T74 \| pdb_00005t74	Download File View File

Human carboanhydrase F131C_C206S double mutant in complex with 14

DuBay, K.H., Iwan, K., Osorio-Planes, L., Geissler, P., Groll, M., Trauner, D., Broichhagen, J.

(2018) ACS Chem Biol 13: 793-800

Released	2017-09-06
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Homo sapiens
Macromolecule	Carbonic anhydrase 2 (protein)
Unique Ligands	75Y, HGB, TRS, ZN

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5T75 \| pdb_00005t75	Download File View File

Human carbonic anhydrase II G132C_C206S double mutant in complex with SA-2

DuBay, K.H., Iwan, K., Osorio-Planes, L., Geissler, P., Groll, M., Trauner, D., Broichhagen, J.

(2018) ACS Chem Biol 13: 793-800

Released	2017-09-06
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	Carbonic anhydrase 2 (protein)
Unique Ligands	4WA, ZN

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7ORE \| pdb_00007ore	Download File View File

Crystal structure of JNK3 in complex with light-activated covalent inhibitor MR-II-249 with both non-covalent and covalent binding modes (compound 4)

Chaikuad, A., Reynders, M., Trauner, D., Knapp, S., Structural Genomics Consortium (SGC)

(2021) Angew Chem Int Ed Engl 60: 20178-20183

Released	2021-07-21
Method	X-RAY DIFFRACTION 2.18 Å
Organisms	Homo sapiens
Macromolecule	Mitogen-activated protein kinase 10 (protein)
Unique Ligands	0EI, EDO

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8OWA \| pdb_00008owa	Download File View File

SR Ca(2+)-ATPase in the E2 state complexed with the photoswitch-thapsigargin derivative AzTG-4

Hjorth-Jensen, S.J., Konrad, D.B., Quistgaard, E.M.H., Hansen, L.C., Novak, A., Chu, H., Jurasek, M., Zimmermann, T., Andersen, J.L., Baran, P.S., Nissen, P., Trauner, D.

To be published

Released	2023-06-21
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Oryctolagus cuniculus
Macromolecule	Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 (protein)
Unique Ligands	ACE, NA, VUK

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8OWL \| pdb_00008owl	Download File View File

SR Ca(2+)-ATPase in the E2 state complexed with the photoswitch-thapsigargin derivative AzTG-6

Hjorth-Jensen, S.J., Konrad, D.B., Quistgaard, E.M.H., Hansen, L.C., Novak, A., Chu, H., Jurasek, M., Zimmermann, T., Andersen, J.L., Baran, P.S., Nissen, P., Trauner, D.

To be published

Released	2023-06-21
Method	X-RAY DIFFRACTION 3.02 Å
Organisms	Oryctolagus cuniculus
Macromolecule	Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 (protein)
Unique Ligands	ACE, NA, VSR

1 to 17 of 17 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

2XQ3 | pdb_00002xq3

Pentameric ligand gated ion channel GLIC in complex with Br-lidocaine

2XQ4 | pdb_00002xq4

Pentameric ligand gated ion channel GLIC in complex with tetramethylarsonium (TMAs)

2XQ5 | pdb_00002xq5

Pentameric ligand gated ion channel GLIC in complex with tetraethylarsonium (TEAs)

2XQ6 | pdb_00002xq6

Pentameric ligand gated ion channel GLIC in complex with cesium ion (Cs+)

2XQ7 | pdb_00002xq7

Pentameric ligand gated ion channel GLIC in complex with cadmium ion (Cd2+)

2XQ8 | pdb_00002xq8

Pentameric ligand gated ion channel GLIC in complex with zinc ion (Zn2+)

2XQ9 | pdb_00002xq9

Pentameric ligand gated ion channel GLIC mutant E221A in complex with tetraethylarsonium (TEAs)

2XQA | pdb_00002xqa

Pentameric ligand gated ion channel GLIC in complex with tetrabutylantimony (TBSb)

4H8I | pdb_00004h8i

Structure of GluK2-LBD in complex with GluAzo

4H8J | pdb_00004h8j

Structure of GluA2-LBD in complex with MES

5T71 | pdb_00005t71

Human carboanhydrase F131C_C206S double mutant in complex with SA-2

5T72 | pdb_00005t72

Human carboanhydrase F131C_C206S double mutant in complex with 2

5T74 | pdb_00005t74

Human carboanhydrase F131C_C206S double mutant in complex with 14

5T75 | pdb_00005t75

Human carbonic anhydrase II G132C_C206S double mutant in complex with SA-2

7ORE | pdb_00007ore

Crystal structure of JNK3 in complex with light-activated covalent inhibitor MR-II-249 with both non-covalent and covalent binding modes (compound 4)

8OWA | pdb_00008owa

SR Ca(2+)-ATPase in the E2 state complexed with the photoswitch-thapsigargin derivative AzTG-4

8OWL | pdb_00008owl

SR Ca(2+)-ATPase in the E2 state complexed with the photoswitch-thapsigargin derivative AzTG-6

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

2XQ3 | pdb_00002xq3

2XQ4 | pdb_00002xq4

2XQ5 | pdb_00002xq5

2XQ6 | pdb_00002xq6

2XQ7 | pdb_00002xq7

2XQ8 | pdb_00002xq8

2XQ9 | pdb_00002xq9

2XQA | pdb_00002xqa

4H8I | pdb_00004h8i

4H8J | pdb_00004h8j

5T71 | pdb_00005t71

5T72 | pdb_00005t72

5T74 | pdb_00005t74

5T75 | pdb_00005t75

7ORE | pdb_00007ore

8OWA | pdb_00008owa

8OWL | pdb_00008owl