RCSB PDB: Search

1D2M \| pdb_00001d2m	Download File View File

UVRB PROTEIN OF THERMUS THERMOPHILUS HB8; A NUCLEOTIDE EXCISION REPAIR ENZYME

Nakagawa, N., Sugahara, M., Masui, R., Kato, R., Fukuyama, K., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(1999) J Biochem 126: 986-990

Released	2000-03-22
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermus thermophilus HB8
Macromolecule	EXCINUCLEASE ABC SUBUNIT B (protein)
Unique Ligands	BOG, SO4

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1EE8 \| pdb_00001ee8	Download File View File

CRYSTAL STRUCTURE OF MUTM (FPG) PROTEIN FROM THERMUS THERMOPHILUS HB8

Sugahara, M., Mikawa, T., Kumasaka, T., Yamamoto, M., Kato, R., Fukuyama, K., Inoue, Y., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2000) EMBO J 19: 3857-3869

Released	2001-01-31
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermus thermophilus HB8
Macromolecule	MUTM (FPG) PROTEIN (protein)
Unique Ligands	ZN

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1J1Y \| pdb_00001j1y	Download File View File

Crystal Structure of PaaI from Thermus thermophilus HB8

Kunishima, N., Sugahara, M., Kuramitsu, S., Yokoyama, S., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2005) J Mol Biology 352: 212-228

Released	2004-02-17
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Thermus thermophilus HB8
Macromolecule	PaaI protein (protein)
Unique Ligands	CL, MG

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1J3B \| pdb_00001j3b	Download File View File

Crystal structure of ATP-dependent phosphoenolpyruvate carboxykinase from Thermus thermophilus HB8

Sugahara, M., Miyano, M., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2005) Acta Crystallogr D Biol Crystallogr 61: 1500-1507

Released	2003-02-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermus thermophilus HB8
Macromolecule	ATP-dependent phosphoenolpyruvate carboxykinase (protein)
Unique Ligands	CA, GOL, PO4

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1UJ4 \| pdb_00001uj4	Download File View File

Crystal structure of Thermus thermophilus ribose-5-phosphate isomerase

Hamada, K., Ago, H., Sugahara, M., Nodake, Y., Kuramitsu, S., Yokoyama, S., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2003) J Biological Chem 278: 49183-49190

Released	2004-07-13
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Thermus thermophilus
Macromolecule	ribose 5-phosphate isomerase (protein)
Unique Ligands	CL

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1UJ5 \| pdb_00001uj5	Download File View File

Crystal structure of Thermus thermophilus ribose-5-phosphate isomerase complexed with ribose-5-phosphate

Hamada, K., Ago, H., Sugahara, M., Nodake, Y., Kuramitsu, S., Yokoyama, S., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2003) J Biological Chem 278: 49183-49190

Released	2004-07-13
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermus thermophilus
Macromolecule	ribose 5-phosphate isomerase (protein)
Unique Ligands	5RP, CL

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1UJ6 \| pdb_00001uj6	Download File View File

Crystal structure of Thermus thermophilus ribose-5-phosphate isomerase complexed with arabinose-5-phosphate

Hamada, K., Ago, H., Sugahara, M., Nodake, Y., Kuramitsu, S., Yokoyama, S., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2003) J Biological Chem 278: 49183-49190

Released	2004-07-13
Method	X-RAY DIFFRACTION 1.74 Å
Organisms	Thermus thermophilus
Macromolecule	ribose 5-phosphate isomerase (protein)
Unique Ligands	A5P, CL

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1UJN \| pdb_00001ujn	Download File View File

Crystal structure of dehydroquinate synthase from Thermus thermophilus HB8

Sugahara, M., Yokoyama, S., Kuramitsu, S., Miyano, M., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2005) Proteins 58: 249-252

Released	2003-09-02
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Thermus thermophilus HB8
Macromolecule	dehydroquinate synthase (protein)

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1ULQ \| pdb_00001ulq	Download File View File

Crystal structure of tt0182 from Thermus thermophilus HB8

Ago, H., Hamada, K., Ida, K., Kanda, H., Sugahara, M., Yamamoto, M., Kuroishi, C., Kuramitsu, S., Yokoyama, S., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2004-11-02
Method	X-RAY DIFFRACTION 3 Å
Organisms	Thermus thermophilus
Macromolecule	putative acetyl-CoA acetyltransferase (protein)

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1ULR \| pdb_00001ulr	Download File View File

Crystal structure of tt0497 from Thermus thermophilus HB8

Ago, H., Hamada, K., Sugahara, M., Kuroishi, C., Kuramitsu, S., Yokoyama, S., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2004-11-02
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Thermus thermophilus
Macromolecule	putative acylphosphatase (protein)

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1ULS \| pdb_00001uls	Download File View File

Crystal structure of tt0140 from Thermus thermophilus HB8

Hisanaga, Y., Ago, H., Hamada, K., Sugahara, M., Nodake, Y., Kuramitsu, S., Yokoyama, S., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2004-11-02
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Thermus thermophilus
Macromolecule	putative 3-oxoacyl-acyl carrier protein reductase (protein)

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1ULT \| pdb_00001ult	Download File View File

Crystal structure of tt0168 from Thermus thermophilus HB8

Hisanaga, Y., Ago, H., Nakatsu, T., Hamada, K., Ida, K., Kanda, H., Yamamoto, M., Hori, T., Arii, Y., Sugahara, M., Kuramitsu, S., Yokoyama, S., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2004) J Biological Chem 279: 31717-31726

Released	2004-07-27
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Thermus thermophilus
Macromolecule	long chain fatty acid-CoA ligase (protein)
Unique Ligands	CIT

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1ULU \| pdb_00001ulu	Download File View File

Crystal structure of tt0143 from Thermus thermophilus HB8

Ago, H., Hamada, K., Ida, K., Kanda, H., Sugahara, M., Yamamoto, M., Nodake, Y., Kuramitsu, S., Yokoyama, S., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2004-11-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermus thermophilus
Macromolecule	enoyl-acyl carrier protein reductase (protein)

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1V25 \| pdb_00001v25	Download File View File

Crystal structure of tt0168 from Thermus thermophilus HB8

Hisanaga, Y., Ago, H., Nakatsu, T., Hamada, K., Ida, K., Kanda, H., Yamamoto, M., Hori, T., Arii, Y., Sugahara, M., Kuramitsu, S., Yokoyama, S., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2004) J Biological Chem 279: 31717-31726

Released	2004-07-27
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Thermus thermophilus
Macromolecule	long-chain-fatty-acid-CoA synthetase (protein)
Unique Ligands	ANP, MG

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1V26 \| pdb_00001v26	Download File View File

Crystal structure of tt0168 from Thermus thermophilus HB8

Hisanaga, Y., Ago, H., Nakatsu, T., Hamada, K., Ida, K., Kanda, H., Yamamoto, M., Hori, T., Arii, Y., Sugahara, M., Kuramitsu, S., Yokoyama, S., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2004) J Biological Chem 279: 31717-31726

Released	2004-07-27
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Thermus thermophilus
Macromolecule	long-chain-fatty-acid-CoA synthetase (protein)
Unique Ligands	AMP, MG, MYR

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1V37 \| pdb_00001v37	Download File View File

Crystal structure of phosphoglycerate mutase from Thermus thermophilus HB8

Sugahara, M., Yokoyama, S., Kuramitsu, S., Miyano, M., Iizuka, T., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2004-12-14
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Thermus thermophilus
Macromolecule	phosphoglycerate mutase (protein)
Unique Ligands	GOL

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1V3T \| pdb_00001v3t	Download File View File

Crystal structure of leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Hori, T., Yokomizo, T., Ago, H., Sugahara, M., Ueno, G., Yamamoto, M., Kumasaka, T., Shimizu, T., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2004) J Biological Chem 279: 22615-22623

Released	2004-07-13
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Cavia porcellus
Macromolecule	leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase (protein)
Unique Ligands	NAP

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1V3U \| pdb_00001v3u	Download File View File

Crystal structure of leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase in apo form

Hori, T., Yokomizo, T., Ago, H., Sugahara, M., Ueno, G., Yamamoto, M., Kumasaka, T., Shimizu, T., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2004) J Biological Chem 279: 22615-22623

Released	2004-07-13
Method	X-RAY DIFFRACTION 2 Å
Organisms	Cavia porcellus
Macromolecule	leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase (protein)
Unique Ligands	CL

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1V3V \| pdb_00001v3v	Download File View File

Crystal structure of leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase complexed with NADP and 15-oxo-PGE2

Hori, T., Yokomizo, T., Ago, H., Sugahara, M., Ueno, G., Yamamoto, M., Kumasaka, T., Shimizu, T., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2004) J Biological Chem 279: 22615-22623

Released	2004-07-13
Method	X-RAY DIFFRACTION 2 Å
Organisms	Cavia porcellus
Macromolecule	leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase (protein)
Unique Ligands	5OP, CL, NAP

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1V7Q \| pdb_00001v7q	Download File View File

Crystal structure of phosphoglycerate mutase from Thermus thermophilus HB8

Sugahara, M., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2005-02-15
Method	X-RAY DIFFRACTION 1.59 Å
Organisms	Thermus thermophilus
Macromolecule	phosphoglycerate mutase (protein)

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1VBK \| pdb_00001vbk	Download File View File

Crystal structure of PH1313 from Pyrococcus horikoshii Ot3

Sugahara, M., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2007) Acta Crystallogr Sect F Struct Biol Cryst Commun 63: 56-58

Released	2005-04-19
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	hypothetical protein PH1313 (protein)
Unique Ligands	MRD

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1VDM \| pdb_00001vdm	Download File View File

Crystal structure of purine phosphoribosyltransferase from Pyrococcus horikoshii Ot3

Sugahara, M., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2005-05-24
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Pyrococcus horikoshii
Macromolecule	purine phosphoribosyltransferase (protein)

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1WLU \| pdb_00001wlu	Download File View File

Crystal structure of TT0310 protein from Thermus thermophilus HB8

Kunishima, N., Sugahara, M., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2005) J Mol Biology 352: 212-228

Released	2005-07-05
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Thermus thermophilus HB8
Macromolecule	phenylacetic acid degradation protein PaaI (protein)
Unique Ligands	CL, GOL

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1WLV \| pdb_00001wlv	Download File View File

Crystal structure of TT0310 protein from Thermus thermophilus HB8

Kunishima, N., Sugahara, M., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2005) J Mol Biology 352: 212-228

Released	2005-07-05
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermus thermophilus HB8
Macromolecule	phenylacetic acid degradation protein PaaI (protein)
Unique Ligands	ACT, CL, COA

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1WM6 \| pdb_00001wm6	Download File View File

Crystal structure of TT0310 protein from Thermus thermophilus HB8

Sugahara, M., Kunishima, N., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2005) J Mol Biology 352: 212-228

Released	2005-07-05
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Thermus thermophilus HB8
Macromolecule	phenylacetic acid degradation protein PaaI (protein)
Unique Ligands	CL

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Scientific Name of Source Organism

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Experimental Method

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Refinement Resolution (Å)

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Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1D2M | pdb_00001d2m

1EE8 | pdb_00001ee8

1J1Y | pdb_00001j1y

1J3B | pdb_00001j3b

1UJ4 | pdb_00001uj4

1UJ5 | pdb_00001uj5

1UJ6 | pdb_00001uj6

1UJN | pdb_00001ujn

1ULQ | pdb_00001ulq

1ULR | pdb_00001ulr

1ULS | pdb_00001uls

1ULT | pdb_00001ult

1ULU | pdb_00001ulu

1V25 | pdb_00001v25

1V26 | pdb_00001v26

1V37 | pdb_00001v37

1V3T | pdb_00001v3t

1V3U | pdb_00001v3u

1V3V | pdb_00001v3v

1V7Q | pdb_00001v7q

1VBK | pdb_00001vbk

1VDM | pdb_00001vdm

1WLU | pdb_00001wlu

1WLV | pdb_00001wlv

1WM6 | pdb_00001wm6