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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Stranieri, M.T."

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Search Summary

This query matches 11 Structures.

Refinements

Structure Determination Methodology

experimental (11)

Scientific Name of Source Organism

	Photorhabdus luminescens (5)
	Saccharomyces cerevisiae (3)
	Xenorhabdus nematophila ATCC 19061 (3)
	Homo sapiens (1)
	Tobacco etch virus (1)

Taxonomy

	Bacteria (8)
	Eukaryota (4)
	Riboviria (1)

Experimental Method

	ELECTRON MICROSCOPY (6)
	X-RAY DIFFRACTION (5)

Polymer Entity Type

Protein (11)

Refinement Resolution (Å)

	2.0 - 2.5 (1)
	2.5 - 3.0 (1)
	3.0 - 3.5 (2)
	3.5 - 4.0 (3)
	4.0 - 4.5 (1)
	> 4.5 (3)

Release Date

	2015 - 2019 (8)
	2020 - 2024 (3)

Enzyme Classification Name

	Hydrolases (2)
	Transferases (1)

Membrane Protein Annotation

	mpstruc (2)
	OPM (1)
	PDBTM (1)

Symmetry Type

	Asymmetric (10)
	Cyclic (1)

AllSelected

1 to 11 of 11 Structures

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6GY6 \| pdb_00006gy6	Download File View File

XaxAB pore complex from Xenorhabdus nematophila

Schubert, E., Raunser, S.

(2018) Elife 7:

Released	2018-07-25
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Xenorhabdus nematophila ATCC 19061
Macromolecule	XaxA (protein) XaxB (protein)

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6GY7 \| pdb_00006gy7	Download File View File

Crystal structure of XaxB from Xenorhabdus nematophil

Schubert, E., Raunser, S., Vetter, I.R., Prumbaum, D., Penczek, P.A.

(2018) Elife 7:

Released	2018-07-25
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Xenorhabdus nematophila ATCC 19061
Macromolecule	XaxB (protein)

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6GY8 \| pdb_00006gy8	Download File View File

Crystal structure of XaxA from Xenorhabdus nematophila

Schubert, E., Raunser, S.

(2018) Elife 7:

Released	2018-07-25
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Xenorhabdus nematophila ATCC 19061
Macromolecule	XaxA (protein)

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6H6E \| pdb_00006h6e	Download File View File

PTC3 holotoxin complex from Photorhabdus luminecens in prepore state (TcdA1, TcdB2, TccC3)

Gatsogiannis, C., Merino, F., Roderer, D., Balchin, D., Schubert, E., Kuhlee, A., Hayer-Hartl, M., Raunser, S.

(2018) Nature 563: 209-213

Released	2018-10-03
Method	ELECTRON MICROSCOPY 3.95 Å
Organisms	Photorhabdus luminescens
Macromolecule	TcdA1 (protein) TcdB2,TccC3 (protein)

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6H6F \| pdb_00006h6f	Download File View File

PTC3 holotoxin complex from Photorhabdus luminiscens - Mutant TcC-D651A

Gatsogiannis, C., Merino, F., Roderer, D., Balchin, D., Schubert, E., Kuhlee, A., Hayer-Hartl, M., Raunser, S.

(2018) Nature 563: 209-213

Released	2018-10-03
Method	ELECTRON MICROSCOPY 3.72 Å
Organisms	Photorhabdus luminescens
Macromolecule	TcdA1 (protein) TcdB2,TccC3,TccC3 (protein)

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6H6G \| pdb_00006h6g	Download File View File

Crystal Structure of TcdB2-TccC3 without hypervariable C-terminal region

Gatsogiannis, C., Merino, F., Roderer, D., Balchin, D., Schubert, E., Kuhlee, A., Hayer-Hartl, M., Raunser, S.

(2018) Nature 563: 209-213

Released	2018-10-03
Method	X-RAY DIFFRACTION 3.004 Å
Organisms	Photorhabdus luminescens
Macromolecule	TcdB2,TccC3 (protein)

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6SUP \| pdb_00006sup	Download File View File

Crystal Structure of TcdB2-TccC3-Cdc42

Roderer, D., Schubert, E., Sitsel, O., Raunser, S.

(2019) Nat Commun 10: 5263-5263

Released	2019-12-04
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens Photorhabdus luminescens
Macromolecule	TcdB2,TccC3,Cell division control protein 42 homolog (protein)
Unique Ligands	MG

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6SUQ \| pdb_00006suq	Download File View File

Crystal Structure of TcdB2-TccC3-TEV

Roderer, D., Schubert, E., Sitsel, O., Raunser, S.

(2019) Nat Commun 10: 5263-5263

Released	2019-12-04
Method	X-RAY DIFFRACTION 3.7 Å
Organisms	Photorhabdus luminescens Tobacco etch virus
Macromolecule	TcdB2,TccC3,Genome polyprotein (protein)

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7P3X \| pdb_00007p3x	Download File View File

Homology model of the full-length AP-3 complex in a compact open conformation

Schubert, E., Raunser, S.

(2021) J Biological Chem 297: 101334-101334

Released	2021-09-29
Method	ELECTRON MICROSCOPY 9.1 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	AP complex subunit sigma (protein) AP-3 complex subunit delta (protein) AP-3 complex subunit mu (protein) Y55_G0035830.mRNA.1.CDS.1 (protein)

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7P3Y \| pdb_00007p3y	Download File View File

Homology model of the full-length AP-3 complex in an intermediate open conformation

Schubert, E., Raunser, S.

(2021) J Biological Chem 297: 101334-101334

Released	2021-09-29
Method	ELECTRON MICROSCOPY 10.1 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	AP complex subunit sigma (protein) AP-3 complex subunit delta (protein) AP-3 complex subunit mu (protein) Y55_G0035830.mRNA.1.CDS.1 (protein)

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7P3Z \| pdb_00007p3z	Download File View File

Homology model of the full-length AP-3 complex in a stretched open conformation

Schubert, E., Raunser, S.

(2021) J Biological Chem 297: 101334-101334

Released	2021-09-29
Method	ELECTRON MICROSCOPY 10.5 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	AP complex subunit sigma (protein) AP-3 complex subunit delta (protein) AP-3 complex subunit mu (protein) Y55_G0035830.mRNA.1.CDS.1 (protein)

1 to 11 of 11 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

6GY6 | pdb_00006gy6

XaxAB pore complex from Xenorhabdus nematophila

6GY7 | pdb_00006gy7

Crystal structure of XaxB from Xenorhabdus nematophil

6GY8 | pdb_00006gy8

Crystal structure of XaxA from Xenorhabdus nematophila

6H6E | pdb_00006h6e

PTC3 holotoxin complex from Photorhabdus luminecens in prepore state (TcdA1, TcdB2, TccC3)

6H6F | pdb_00006h6f

PTC3 holotoxin complex from Photorhabdus luminiscens - Mutant TcC-D651A

6H6G | pdb_00006h6g

Crystal Structure of TcdB2-TccC3 without hypervariable C-terminal region

6SUP | pdb_00006sup

Crystal Structure of TcdB2-TccC3-Cdc42

6SUQ | pdb_00006suq

Crystal Structure of TcdB2-TccC3-TEV

7P3X | pdb_00007p3x

Homology model of the full-length AP-3 complex in a compact open conformation

7P3Y | pdb_00007p3y

Homology model of the full-length AP-3 complex in an intermediate open conformation

7P3Z | pdb_00007p3z

Homology model of the full-length AP-3 complex in a stretched open conformation

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

6GY6 | pdb_00006gy6

6GY7 | pdb_00006gy7

6GY8 | pdb_00006gy8

6H6E | pdb_00006h6e

6H6F | pdb_00006h6f

6H6G | pdb_00006h6g

6SUP | pdb_00006sup

6SUQ | pdb_00006suq

7P3X | pdb_00007p3x

7P3Y | pdb_00007p3y

7P3Z | pdb_00007p3z